Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171079157-171200640

56 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
n-TEctc7	1	171079406 to 171079477	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 7 (anticodon CTC)
Gm27844	1	171079840 to 171079901	61	-	miRNA gene	predicted gene, 27844
n-TGtcc4	1	171079948 to 171080019	71	-	tRNA gene	nuclear encoded tRNA glycine 4 (anticodon TCC)
n-TDgtc6	1	171080607 to 171080678	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 6 (anticodon GTC)
n-TLcag8	1	171081233 to 171081315	82	+	tRNA gene	nuclear encoded tRNA leucine 8 (anticodon CAG)
n-TGgcc14	1	171081876 to 171081946	70	+	tRNA gene	nuclear encoded tRNA glycine 14 (anticodon GCC)
Cpgi1007	1	171085741 to 171086115	374		CpG island	CpG island 1007
Tssr14978	1	171089980 to 171089989	9	-	TSS region	transcription start site region 14978
Tssr14979	1	171101117 to 171101118	1	-	TSS region	transcription start site region 14979
Cpgi1008	1	171101828 to 171102879	1051		CpG island	CpG island 1008
n-TLcag9	1	171101838 to 171101920	82	-	tRNA gene	nuclear encoded tRNA leucine 9 (anticodon CAG)
n-TDgtc5	1	171102371 to 171102442	71	+	tRNA gene	nuclear encoded tRNA aspartic acid 5 (anticodon GTC)
n-TGtcc3	1	171102756 to 171102827	71	+	tRNA gene	nuclear encoded tRNA glycine 3 (anticodon TCC)
n-TEctc6	1	171103043 to 171103114	71	+	tRNA gene	nuclear encoded tRNA glutamic acid 6 (anticodon CTC)
Cpgi1009	1	171110931 to 171111186	255		CpG island	CpG island 1009
n-TVcac6	1	171111443 to 171111515	72	+	tRNA gene	nuclear encoded tRNA valine 6 (anticodon CAC)
Cpgi1010	1	171113827 to 171114265	438		CpG island	CpG island 1010
Cfap126	1	171113918 to 171126967	13049	+	protein coding gene	cilia and flagella associated protein 126
Tssr14980	1	171113945 to 171113954	9	-	TSS region	transcription start site region 14980
Tssr9962	1	171113977 to 171114048	71	+	TSS region	transcription start site region 9962
Tssr9963	1	171114196 to 171114200	4	+	TSS region	transcription start site region 9963
Tssr9964	1	171121630 to 171121637	7	+	TSS region	transcription start site region 9964
Tssr9965	1	171121646 to 171121669	23	+	TSS region	transcription start site region 9965
Tssr9966	1	171121671 to 171121678	7	+	TSS region	transcription start site region 9966
Tssr9967	1	171121681 to 171121696	15	+	TSS region	transcription start site region 9967
Tssr9968	1	171121701 to 171121708	7	+	TSS region	transcription start site region 9968
Tssr9969	1	171122033 to 171122053	20	+	TSS region	transcription start site region 9969
Tssr9970	1	171123126 to 171123168	42	+	TSS region	transcription start site region 9970
Tssr9971	1	171125315 to 171125324	9	+	TSS region	transcription start site region 9971
Tssr9972	1	171126091 to 171126113	22	+	TSS region	transcription start site region 9972
Sdhc	1	171129157 to 171150603	21446	-	protein coding gene	succinate dehydrogenase complex, subunit C, integral membrane protein
Tssr14981	1	171129720 to 171129745	25	-	TSS region	transcription start site region 14981
Tssr14982	1	171129860 to 171129900	40	-	TSS region	transcription start site region 14982
Gm46172	1	171131757 to 171133767	2010	-	lncRNA gene	predicted gene, 46172
Tssr14983	1	171136063 to 171136075	12	-	TSS region	transcription start site region 14983
Tssr14984	1	171136148 to 171136160	12	-	TSS region	transcription start site region 14984
Cpgi1011	1	171150327 to 171150760	433		CpG island	CpG island 1011
Tssr14985	1	171150592 to 171150609	17	-	TSS region	transcription start site region 14985
Mpz	1	171150713 to 171161130	10417	+	protein coding gene	myelin protein zero
Tssr9973	1	171155512 to 171155529	17	+	TSS region	transcription start site region 9973
Tssr9974	1	171158767 to 171158779	12	+	TSS region	transcription start site region 9974
Tssr9975	1	171159547 to 171159559	12	+	TSS region	transcription start site region 9975
Cpgi1012	1	171159766 to 171160114	348		CpG island	CpG island 1012
Tssr9976	1	171160059 to 171160076	17	+	TSS region	transcription start site region 9976
Tssr9977	1	171160284 to 171160306	22	+	TSS region	transcription start site region 9977
Tssr9978	1	171160308 to 171160335	27	+	TSS region	transcription start site region 9978
Tssr9979	1	171160356 to 171160359	3	+	TSS region	transcription start site region 9979
Tssr9980	1	171160423 to 171160434	11	+	TSS region	transcription start site region 9980
Tssr9981	1	171160643 to 171160652	9	+	TSS region	transcription start site region 9981
Pcp4l1	1	171173264 to 171196268	23004	-	protein coding gene	Purkinje cell protein 4-like 1
Tssr14986	1	171173713 to 171173717	4	-	TSS region	transcription start site region 14986
Tssr14987	1	171174087 to 171174098	11	-	TSS region	transcription start site region 14987
Tssr9982	1	171174443 to 171174466	23	+	TSS region	transcription start site region 9982
Cpgi1013	1	171195843 to 171196252	409		CpG island	CpG island 1013
Tssr285	1	171196171 to 171196182	11	-	TSS region	transcription start site region 285
Tssr14988	1	171196229 to 171196246	17	-	TSS region	transcription start site region 14988