MPD: Measures involving computed tomography

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Beamer1:1	Beamer1	computed tomography	(none)	femur, average bone volume (total, mid diaphysis) [g/cm³] femur_mid_cort_vol 10501	QTL population		f	20wks	N=711	1999

Beamer1:2	Beamer1	computed tomography	(none)	femur, average cortical bone volume (mid-diaphysis) [g/cm³] femur_mid_tot_vol 10502	QTL population		f	20wks	N=711	1999

Beamer2:6	Beamer2	computed tomography	(none)	femur, average bone volume (total, mid-diaphysis) [g/cm³] femur_mid_tot_vol 11206	QTL population		f	16wks	N=999	2001

Beamer2:7	Beamer2	computed tomography	(none)	femur, average cortical bone volume, mid-diaphysis [g/cm³] femur_mid_cort_vol 11207	QTL population		f	16wks	N=999	2001

Beamer2:8	Beamer2	computed tomography	(none)	femur, percentage of total volume that is cortical bone [%] femur_pct_cort 11208	QTL population		f	16wks	N=999	2001

Beamer2:9	Beamer2	computed tomography	(none)	femur, surface area to tissue volume (index) [ratio] femur_ratio 11209	QTL population		f	16wks	N=999	2001

Beamer2:10	Beamer2	computed tomography	(none)	femur, length, condyles to rostral tip of greater trochanter [mm] femur_length 11210	QTL population		f	16wks	N=999	2001

Beamer2:11	Beamer2	computed tomography	(none)	femur, average cortical thickness, mid-diaphysis [mm] femur_thickness 11211	QTL population		f	16wks	N=999	2001

Beamer2:12	Beamer2	computed tomography	(none)	femur, medial to lateral width, mid-diaphysis [mm] femur_ML 11212	QTL population		f	16wks	N=999	2001

Beamer2:13	Beamer2	computed tomography	(none)	femur, anterior to posterior width, rostral to caudal, mid-diaphysis [mm] femur_AP 11213	QTL population		f	16wks	N=999	2001

Beamer2:14	Beamer2	computed tomography	(none)	femur, ratio of medial-lateral (ML) to anterior-posterior (AP) [ratio] femur_ML_AP 11214	QTL population		f	16wks	N=999	2001

Beamer2:22	Beamer2	computed tomography	(none)	trabecular bone, surface area to volume (ratio) [ratio] trab_ratio 11222	QTL population		f	16wks	N=999	2001

Beamer2:23	Beamer2	computed tomography	(none)	trabecular bone, average thickness [mm] trab_thickness 11223	QTL population		f	16wks	N=999	2001

Beamer2:24	Beamer2	computed tomography	(none)	trabecular bone, average number [n] trab_number 11224	QTL population		f	16wks	N=999	2001

Beamer2:25	Beamer2	computed tomography	(none)	trabecular bone, average spacing [mm] trab_spacing 11225	QTL population		f	16wks	N=999	2001

Burke1:1	Burke1	computed tomography	(none)	right femur length [mm] Femur_length 26301	QTL population		f	80wks	N=505	2012

Burke1:2	Burke1	computed tomography	(none)	caudal 8 (C8) vertebra length [mm] Vert_length 26302	QTL population		f	80wks	N=505	2012

Burke1:3	Burke1	computed tomography	(none)	vertebra bone volume fraction [%] Vert_BVF 26303	QTL population		f	80wks	N=505	2012

Burke1:4	Burke1	computed tomography	(none)	vertebra trabecular plate number, number of trabeculae per mm along a cross-sectional line of the CT scan of the vertebral bone [n] Vert_TPN 26304	QTL population		f	80wks	N=505	2012

Burke1:21	Burke1	computed tomography	(none)	right femur length [mm] Femur_length_b 26801	QTL population		f	80wks	N=832	2012

Donahue2:16	Donahue2	computed tomography	(none)	cross sectional bone area, whole thigh area minus muscle area, femoral mid-diaphysis [mm²] femur_area 17216	inbred	10	both	16wks	N=10	2004

Donahue2:17	Donahue2	computed tomography	(none)	cortical thickness of right femur, pQCT [mm] femur_thickness_R1 17217	inbred	10	both	16wks	N=10	2004

Donahue2:18	Donahue2	computed tomography	(none)	cortical thickness of right femur, µCT [mm] femur_thickness_R2 17218	inbred	10	both	16wks	N=10	2004

Donahue2:19	Donahue2	computed tomography	(none)	cortical thickness of left femur, pQCT [mm] femur_thickness_L 17219	inbred	10	both	16wks	N=10	2004

Donahue2:20	Donahue2	computed tomography	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] femur_out 17220	inbred	10	both	16wks	N=10	2004

Donahue2:21	Donahue2	computed tomography	(none)	endosteal (inner) circumference, femoral mid-diaphysis [mm] femur_in 17221	inbred	10	both	16wks	N=10	2004

GMC14:41	GMC14	computed tomography	(none)	number of main vessels in fundus [n] fundus_vessels 56341 left eye right eye	inbred w/CC8	8	both	15-17wks	N=12	2018

GMC14:51	GMC14	computed tomography	(none)	retinal thickness, optical coherence tomography [µm] retinal_thickness 56351 left eye right eye	inbred w/CC8	8	both	15-17wks	N=13	2018

Iraqi1:1	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	bone volume of the maxillary jaw (x 10^-3), uninfected [mm³] control_bone_vol 49501	CC pre	23	both	8wks	N=4	2013

Iraqi1:2	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	residual bone volume of the maxillary jaw (x 10^-3), post-infection (peridontitis) [mm³] residual_bone_vol 49502	CC pre	23	both	8wks	N=3	2013

Levy1:3	Levy1	computed tomography	(none)	femur length [mm] femur_length 54903	CC pre	31	both	8-14wks	N=3	2015

Levy1:4	Levy1	computed tomography	(none)	trabecular bone volume fraction of femur (BVTV) [%] Tb_volume 54904	CC pre	31	both	8-14wks	N=3	2015

Levy1:5	Levy1	computed tomography	(none)	trabecular bone connectivity density of femur (Conn.D) [mm^-3] Tb_connectivity 54905	CC pre	31	both	8-14wks	N=3	2015

Levy1:6	Levy1	computed tomography	(none)	trabecular bone number of femur (Tb.N) [mm^-1] Tb_number 54906	CC pre	31	both	8-14wks	N=3	2015

Levy1:7	Levy1	computed tomography	(none)	trabecular bone thickness of femur (Tb.Th) [µm] Tb_thickness 54907	CC pre	31	both	8-14wks	N=3	2015

Beamer1

computed tomography

(none)

femur, average bone volume (total, mid diaphysis) [g/cm³] femur_mid_cort_vol 10501

QTL population

f

20wks

N=711

1999

Beamer1

computed tomography

(none)

femur, average cortical bone volume (mid-diaphysis) [g/cm³] femur_mid_tot_vol 10502

QTL population

f

20wks

N=711

1999

Beamer2

computed tomography

(none)

femur, average bone volume (total, mid-diaphysis) [g/cm³] femur_mid_tot_vol 11206

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, average cortical bone volume, mid-diaphysis [g/cm³] femur_mid_cort_vol 11207

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, percentage of total volume that is cortical bone [%] femur_pct_cort 11208

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, surface area to tissue volume (index) [ratio] femur_ratio 11209

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, length, condyles to rostral tip of greater trochanter [mm] femur_length 11210

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, average cortical thickness, mid-diaphysis [mm] femur_thickness 11211

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, medial to lateral width, mid-diaphysis [mm] femur_ML 11212

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, anterior to posterior width, rostral to caudal, mid-diaphysis [mm] femur_AP 11213

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

femur, ratio of medial-lateral (ML) to anterior-posterior (AP) [ratio] femur_ML_AP 11214

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

trabecular bone, surface area to volume (ratio) [ratio] trab_ratio 11222

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

trabecular bone, average thickness [mm] trab_thickness 11223

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

trabecular bone, average number [n] trab_number 11224

QTL population

f

16wks

N=999

2001

Beamer2

computed tomography

(none)

trabecular bone, average spacing [mm] trab_spacing 11225

QTL population

f

16wks

N=999

2001

Burke1

computed tomography

(none)

right femur length [mm] Femur_length 26301

QTL population

f

80wks

N=505

2012

Burke1

computed tomography

(none)

caudal 8 (C8) vertebra length [mm] Vert_length 26302

QTL population

f

80wks

N=505

2012

Burke1

computed tomography

(none)

vertebra bone volume fraction [%] Vert_BVF 26303

QTL population

f

80wks

N=505

2012

Burke1

computed tomography

(none)

vertebra trabecular plate number, number of trabeculae per mm along a cross-sectional line of the CT scan of the vertebral bone [n] Vert_TPN 26304

QTL population

f

80wks

N=505

2012

Burke1

computed tomography

(none)

right femur length [mm] Femur_length_b 26801

QTL population

f

80wks

N=832

2012

Donahue2

computed tomography

(none)

cross sectional bone area, whole thigh area minus muscle area, femoral mid-diaphysis [mm²] femur_area 17216

inbred

10

both

16wks

N=10

2004

Donahue2

computed tomography

(none)

cortical thickness of right femur, pQCT [mm] femur_thickness_R1 17217

inbred

10

both

16wks

N=10

2004

Donahue2

computed tomography

(none)

cortical thickness of right femur, µCT [mm] femur_thickness_R2 17218

inbred

10

both

16wks

N=10

2004

Donahue2

computed tomography

(none)

cortical thickness of left femur, pQCT [mm] femur_thickness_L 17219

inbred

10

both

16wks

N=10

2004

Donahue2

computed tomography

(none)

periosteal (outer) circumference, femoral mid-diaphysis [mm] femur_out 17220

inbred

10

both

16wks

N=10

2004

Donahue2

computed tomography

(none)

endosteal (inner) circumference, femoral mid-diaphysis [mm] femur_in 17221

inbred

10

both

16wks

N=10

2004

GMC14

computed tomography

(none)

number of main vessels in fundus [n] fundus_vessels 56341 left eye right eye

inbred w/CC8

8

both

15-17wks

N=12

2018

GMC14

computed tomography

(none)

retinal thickness, optical coherence tomography [µm] retinal_thickness 56351 left eye right eye

inbred w/CC8

8

both

15-17wks

N=13

2018

Iraqi1

computed tomography

P.gingivalis and F.nucleatum

bone volume of the maxillary jaw (x 10^-3), uninfected [mm³] control_bone_vol 49501

CC pre

23

both

8wks

N=4

2013

Iraqi1

computed tomography

P.gingivalis and F.nucleatum

residual bone volume of the maxillary jaw (x 10^-3), post-infection (peridontitis) [mm³] residual_bone_vol 49502

CC pre

23

both

8wks

N=3

2013

Levy1

computed tomography

(none)

femur length [mm] femur_length 54903

CC pre

31

both

8-14wks

N=3

2015

Levy1

computed tomography

(none)

trabecular bone volume fraction of femur (BVTV) [%] Tb_volume 54904

CC pre

31

both

8-14wks

N=3

2015

Levy1

computed tomography

(none)

trabecular bone connectivity density of femur (Conn.D) [mm^-3] Tb_connectivity 54905

CC pre

31

both

8-14wks

N=3

2015

Levy1

computed tomography

(none)

trabecular bone number of femur (Tb.N) [mm^-1] Tb_number 54906

CC pre

31

both

8-14wks

N=3

2015

Levy1

computed tomography

(none)

trabecular bone thickness of femur (Tb.Th) [µm] Tb_thickness 54907

CC pre

31

both

8-14wks

N=3

2015

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