Project measure / variable:   Brown1   urination_EPM

ID, description, units MPD:9428   urination_EPM   urine puddle count   [n]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Brown1 - urine puddle count



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means1.24   n 1.81   n
Median of the strain means1.39   n 1.75   n
SD of the strain means± 0.520 ± 0.893
Coefficient of variation (CV)0.419 0.494
Min–max range of strain means0.444   –   2.18   n 0.0833   –   3.26   n
Mean sample size per strain12.2   mice 13.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.7317 17.7317 5.1959 0.0233
strain 12 109.1914 9.0993 2.6664 0.002
sex:strain 12 84.9406 7.0784 2.0742 0.0183
Residuals 320 1092.0351 3.4126


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.42 1.08   12 0.313 0.765 0.34
129S1/SvImJ m 1.75 1.76   12 0.509 1.01 -0.07
A/J f 0.583 0.996   12 0.288 1.71 -1.26
A/J m 1.68 2.33   19 0.536 1.39 -0.14
AKR/J f 1.5 1.31   12 0.379 0.876 0.5
AKR/J m 3.26 2.9   19 0.666 0.89 1.62
BALB/cByJ f 2.18 1.37   22 0.292 0.627 1.0, 5.0 1.8
BALB/cByJ m 2.17 1.53   12 0.441 0.705 1.0, 6.0 0.4
BALB/cJ f 1.79 1.05   14 0.281 0.589 1.05
BALB/cJ m 2.0 1.65   12 0.477 0.826 0.21
C3H/HeJ f 1.76 3.96   17 0.961 2.24 1.0
C3H/HeJ m 0.167 0.514   18 0.121 3.09 -1.84
C57BL/6J f 0.833 0.718   12 0.207 0.861 -0.78
C57BL/6J m 2.23 2.28   13 0.632 1.02 0.47
CAST/EiJ f 0.545 0.934   11 0.282 1.71 -1.34
CAST/EiJ m 0.0833 0.289   12 0.0833 3.46 -1.93
DBA/2J f 1.54 1.51   13 0.418 0.979 0.57
DBA/2J m 1.62 2.1   13 0.583 1.3 -0.21
FVB/NJ f 1.0 0.953   12 0.275 0.953 -0.46
FVB/NJ m 1.58 1.08   12 0.313 0.684 -0.26
MOLF/EiJ f 1.4 1.78   10 0.562 1.27 0.31
MOLF/EiJ m 1.73 1.19   11 0.359 0.689 -0.09
SJL/J f 1.38 1.66   13 0.46 1.2 0.27
SJL/J m 2.67 1.15   12 0.333 0.433 1.0, 4.0 0.96
SM/J f 0.444 0.726   9 0.242 1.63 -1.53
SM/J m 2.58 3.37   12 0.973 1.3 0.86
SPRET/EiJ f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.4167 0.5333 2.4658 0.3675
129S1/SvImJ m 1.75 0.5333 2.7992 0.7008
A/J f 0.5833 0.5333 1.6325 0.0
A/J m 1.6842 0.4238 2.518 0.8504
AKR/J f 1.5 0.5333 2.5492 0.4508
AKR/J m 3.2632 0.4238 4.097 2.4294
BALB/cByJ f 2.1818 0.3939 2.9567 1.407
BALB/cByJ m 2.1667 0.5333 3.2158 1.1175
BALB/cJ f 1.7857 0.4937 2.7571 0.8144
BALB/cJ m 2.0 0.5333 3.0492 0.9508
C3H/HeJ f 1.7647 0.448 2.6462 0.8832
C3H/HeJ m 0.1667 0.4354 1.0233 0.0
C57BL/6J f 0.8333 0.5333 1.8825 0.0
C57BL/6J m 2.2308 0.5124 3.2388 1.2228
CAST/EiJ f 0.5455 0.557 1.6413 0.0
CAST/EiJ m 0.0833 0.5333 1.1325 0.0
DBA/2J f 1.5385 0.5124 2.5465 0.5305
DBA/2J m 1.6154 0.5124 2.6234 0.6074
FVB/NJ f 1.0 0.5333 2.0492 0.0
FVB/NJ m 1.5833 0.5333 2.6325 0.5342
MOLF/EiJ f 1.4 0.5842 2.5493 0.2507
MOLF/EiJ m 1.7273 0.557 2.8231 0.6314
SJL/J f 1.3846 0.5124 2.3926 0.3766
SJL/J m 2.6667 0.5333 3.7158 1.6175
SM/J f 0.4444 0.6158 1.6559 0.0
SM/J m 2.5833 0.5333 3.6325 1.5342


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.5833 0.3771 2.3252 0.8415
A/J both 1.1338 0.3406 1.8038 0.4637
AKR/J both 2.3816 0.3406 3.0516 1.7115
BALB/cByJ both 2.1742 0.3315 2.8264 1.5221
BALB/cJ both 1.8929 0.3634 2.6077 1.178
C3H/HeJ both 0.9657 0.3124 1.5803 0.3511
C57BL/6J both 1.5321 0.3698 2.2595 0.8046
CAST/EiJ both 0.3144 0.3856 1.0729 0.0
DBA/2J both 1.5769 0.3623 2.2897 0.8642
FVB/NJ both 1.2917 0.3771 2.0335 0.5498
MOLF/EiJ both 1.5636 0.4036 2.3576 0.7696
SJL/J both 2.0256 0.3698 2.7531 1.2982
SM/J both 1.5139 0.4073 2.3152 0.7126




  GWAS USING LINEAR MIXED MODELS