Project measure / variable:   Brown1   dark_dur_LD

ID, description, units MPD:9415   dark_dur_LD   dark zone duration   [s]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
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  STRAIN COMPARISON PLOT
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Brown1 - dark zone duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means197   s 193   s
Median of the strain means210   s 198   s
SD of the strain means± 48.8 ± 37.8
Coefficient of variation (CV)0.248 0.196
Min–max range of strain means95.2   –   249   s 120   –   261   s
Mean sample size per strain12.9   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2646.7205 2646.7205 0.7357 0.3916
strain 13 591712.3464 45516.3343 12.6526 < 0.0001
sex:strain 13 59121.3172 4547.7936 1.2642 0.233
Residuals 337 1212317.6192 3597.3817


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 95.2 85.7   12 24.8 0.901 7.31, 277.0 -2.09
129S1/SvImJ m 157.0 111.0   12 31.9 0.703 1.04, 296.0 -0.95
A/J f 224.0 85.7   12 24.7 0.384 0.55
A/J m 166.0 134.0   16 33.6 0.81 -0.71
AKR/J f 249.0 32.3   12 9.32 0.13 154.0, 286.0 1.06
AKR/J m 236.0 30.5   19 6.99 0.129 156.0, 283.0 1.14
BALB/cByJ f 247.0 68.0   22 14.5 0.275 2.64, 297.0 1.02
BALB/cByJ m 261.0 36.7   12 10.6 0.141 172.0, 300.0 1.8
BALB/cJ f 212.0 68.0   14 18.2 0.32 61.6, 291.0 0.31
BALB/cJ m 196.0 106.0   12 30.6 0.541 0.08
C3H/HeJ f 162.0 49.8   19 11.4 0.307 66.6, 268.0 -0.72
C3H/HeJ m 162.0 44.9   13 12.4 0.276 105.0, 280.0 -0.82
C57BL/6J f 117.0 35.3   12 10.2 0.302 80.2, 188.0 -1.64
C57BL/6J m 120.0 34.9   13 9.68 0.291 70.7, 187.0 -1.93
CAST/EiJ f 207.0 36.8   9 12.3 0.178 123.0, 260.0 0.2
CAST/EiJ m 207.0 37.7   12 10.9 0.182 137.0, 275.0 0.37
DBA/2J f 244.0 22.4   14 5.99 0.0916 196.0, 279.0 0.96
DBA/2J m 212.0 46.2   13 12.8 0.218 124.0, 291.0 0.51
FVB/NJ f 152.0 28.7   12 8.3 0.189 83.0, 188.0 -0.92
FVB/NJ m 160.0 16.1   12 4.66 0.101 130.0, 185.0 -0.87
MOLF/EiJ f 195.0 43.1   12 12.4 0.221 114.0, 263.0 -0.04
MOLF/EiJ m 201.0 36.1   11 10.9 0.18 161.0, 288.0 0.22
SJL/J f 195.0 40.3   13 11.2 0.207 115.0, 253.0 -0.04
SJL/J m 177.0 48.4   12 14.0 0.273 114.0, 259.0 -0.42
SM/J f 242.0 28.9   10 9.13 0.119 176.0, 283.0 0.92
SM/J m 230.0 36.0   11 10.8 0.157 167.0, 271.0 0.98
SPRET/EiJ f 218.0 56.0   13 15.5 0.257 88.8, 291.0 0.43
SPRET/EiJ m 215.0 41.7   11 12.6 0.194 150.0, 268.0 0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 95.1767 17.3142 129.2342 61.1191
129S1/SvImJ m 157.2858 17.3142 191.3434 123.2283
A/J f 223.5 17.3142 257.5575 189.4425
A/J m 165.9263 14.9945 195.4209 136.4316
AKR/J f 248.8333 17.3142 282.8909 214.7758
AKR/J m 236.4737 13.7599 263.5399 209.4075
BALB/cByJ f 247.0745 12.7874 272.2277 221.9214
BALB/cByJ m 261.1667 17.3142 295.2242 227.1091
BALB/cJ f 212.2571 16.0298 243.7883 180.726
BALB/cJ m 195.5575 17.3142 229.615 161.5
C3H/HeJ f 162.1632 13.7599 189.2293 135.097
C3H/HeJ m 162.3846 16.635 195.106 129.6632
C57BL/6J f 116.725 17.3142 150.7825 82.6675
C57BL/6J m 119.8385 16.635 152.5599 87.117
CAST/EiJ f 206.6667 19.9927 245.9929 167.3404
CAST/EiJ m 207.25 17.3142 241.3075 173.1925
DBA/2J f 244.4286 16.0298 275.9597 212.8974
DBA/2J m 211.8462 16.635 244.5676 179.1247
FVB/NJ f 151.6667 17.3142 185.7242 117.6091
FVB/NJ m 160.25 17.3142 194.3075 126.1925
MOLF/EiJ f 194.9167 17.3142 228.9742 160.8591
MOLF/EiJ m 201.0 18.0841 236.5719 165.4281
SJL/J f 195.0 16.635 227.7214 162.2786
SJL/J m 177.1667 17.3142 211.2242 143.1091
SM/J f 241.8 18.9668 279.1082 204.4918
SM/J m 229.5455 18.0841 265.1174 193.9735
SPRET/EiJ f 218.3692 16.635 251.0907 185.6478
SPRET/EiJ m 215.1818 18.0841 250.7538 179.6099


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 126.2313 12.243 150.3136 102.1489
A/J both 194.7131 11.4523 217.2401 172.1862
AKR/J both 242.6535 11.058 264.4049 220.9021
BALB/cByJ both 254.1206 10.7622 275.2901 232.9511
BALB/cJ both 203.9073 11.7976 227.1136 180.701
C3H/HeJ both 162.2739 10.7942 183.5063 141.0414
C57BL/6J both 118.2817 12.0052 141.8964 94.6671
CAST/EiJ both 206.9583 13.2239 232.9702 180.9465
DBA/2J both 228.1374 11.5507 250.858 205.4167
FVB/NJ both 155.9583 12.243 180.0406 131.876
MOLF/EiJ both 197.9583 12.5182 222.5819 173.3348
SJL/J both 186.0833 12.0052 209.698 162.4687
SM/J both 235.6727 13.1032 261.447 209.8984
SPRET/EiJ both 216.7755 12.2857 240.9419 192.6092




  GWAS USING LINEAR MIXED MODELS