Project measure / variable:   Brown1   stretch_d1_OFT

ID, description, units MPD:9413   stretch_d1_OFT   total stretch attends, 5 min test, day 1   [n]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Brown1 - total stretch attends, 5 min test, day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means5.28   n 4.44   n
Median of the strain means3.41   n 2.26   n
SD of the strain means± 5.40 ± 4.85
Coefficient of variation (CV)1.02 1.09
Min–max range of strain means0.333   –   15.0   n 0.273   –   15.7   n
Mean sample size per strain12.8   mice 13.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 47.5511 47.5511 1.2043 0.2732
strain 13 9097.0479 699.7729 17.7231 < 0.0001
sex:strain 13 710.7411 54.6724 1.3847 0.1643
Residuals 344 13582.367 39.4836


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.42 2.47   12 0.712 0.722 -0.34
129S1/SvImJ m 2.75 2.22   12 0.641 0.808 -0.35
A/J f 14.4 6.23   12 1.8 0.432 1.0, 23.0 1.69
A/J m 15.7 11.5   20 2.58 0.736 2.32
AKR/J f 15.0 14.5   12 4.2 0.97 1.8
AKR/J m 6.84 5.77   19 1.32 0.843 1.0, 21.0 0.49
BALB/cByJ f 13.5 10.0   22 2.13 0.739 2.0, 41.0 1.52
BALB/cByJ m 13.0 9.1   12 2.63 0.7 1.76
BALB/cJ f 8.14 6.46   14 1.73 0.793 0.53
BALB/cJ m 8.33 6.11   12 1.76 0.733 3.0, 21.0 0.8
C3H/HeJ f 3.39 3.58   18 0.845 1.06 -0.35
C3H/HeJ m 4.56 7.05   16 1.76 1.55 0.03
C57BL/6J f 0.583 1.08   12 0.313 1.86 -0.87
C57BL/6J m 1.54 3.13   13 0.867 2.03 -0.6
CAST/EiJ f 0.5 0.85   10 0.269 1.7 -0.89
CAST/EiJ m 0.6 0.843   10 0.267 1.41 -0.79
DBA/2J f 3.93 4.45   14 1.19 1.13 -0.25
DBA/2J m 1.77 2.01   13 0.556 1.13 -0.55
FVB/NJ f 0.333 0.651   12 0.188 1.95 -0.92
FVB/NJ m 0.667 1.23   12 0.355 1.85 -0.78
MOLF/EiJ f 1.42 3.37   12 0.973 2.38 -0.72
MOLF/EiJ m 0.273 0.647   11 0.195 2.37 -0.86
SJL/J f 1.38 2.14   13 0.594 1.55 -0.72
SJL/J m 1.75 1.54   12 0.446 0.883 -0.55
SM/J f 1.4 1.35   10 0.427 0.964 -0.72
SM/J m 3.42 3.29   12 0.949 0.962 -0.21
SPRET/EiJ f 6.54 12.3   13 3.41 1.88 0.23
SPRET/EiJ m 0.917 1.24   12 0.358 1.35 -0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4167 1.8139 6.9844 0.0
129S1/SvImJ m 2.75 1.8139 6.3178 0.0
A/J f 14.4167 1.8139 17.9844 10.8489
A/J m 15.7 1.4051 18.4636 12.9364
AKR/J f 15.0 1.8139 18.5678 11.4322
AKR/J m 6.8421 1.4416 9.6775 4.0067
BALB/cByJ f 13.5455 1.3397 16.1804 10.9105
BALB/cByJ m 13.0 1.8139 16.5678 9.4322
BALB/cJ f 8.1429 1.6794 11.446 4.8397
BALB/cJ m 8.3333 1.8139 11.9011 4.7656
C3H/HeJ f 3.3889 1.4811 6.302 0.4758
C3H/HeJ m 4.5625 1.5709 7.6523 1.4727
C57BL/6J f 0.5833 1.8139 4.1511 0.0
C57BL/6J m 1.5385 1.7428 4.9663 0.0
CAST/EiJ f 0.5 1.987 4.4083 0.0
CAST/EiJ m 0.6 1.987 4.5083 0.0
DBA/2J f 3.9286 1.6794 7.2317 0.6255
DBA/2J m 1.7692 1.7428 5.197 0.0
FVB/NJ f 0.3333 1.8139 3.9011 0.0
FVB/NJ m 0.6667 1.8139 4.2344 0.0
MOLF/EiJ f 1.4167 1.8139 4.9844 0.0
MOLF/EiJ m 0.2727 1.8946 3.9991 0.0
SJL/J f 1.3846 1.7428 4.8124 0.0
SJL/J m 1.75 1.8139 5.3178 0.0
SM/J f 1.4 1.987 5.3083 0.0
SM/J m 3.4167 1.8139 6.9844 0.0
SPRET/EiJ f 6.5385 1.7428 9.9663 3.1107
SPRET/EiJ m 0.9167 1.8139 4.4844 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.0833 1.2826 5.6061 0.5605
A/J both 15.0583 1.1472 17.3148 12.8019
AKR/J both 10.9211 1.1585 13.1997 8.6424
BALB/cByJ both 13.2727 1.1275 15.4904 11.0551
BALB/cJ both 8.2381 1.236 10.6691 5.8071
C3H/HeJ both 3.9757 1.0795 6.0989 1.8524
C57BL/6J both 1.0609 1.2577 3.5347 0.0
CAST/EiJ both 0.55 1.4051 3.3136 0.0
DBA/2J both 2.8489 1.2101 5.229 0.4688
FVB/NJ both 0.5 1.2826 3.0228 0.0
MOLF/EiJ both 0.8447 1.3115 3.4242 0.0
SJL/J both 1.5673 1.2577 4.0411 0.0
SM/J both 2.4083 1.3452 5.0543 0.0
SPRET/EiJ both 3.7276 1.2577 6.2014 1.2538




  GWAS USING LINEAR MIXED MODELS