Project measure / variable:   Odet1   sperm_normal

ID, description, units MPD:53741   sperm_normal   percentage of sperm with normal morphology   [%]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
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  STRAIN COMPARISON PLOT
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Odet1 - percentage of sperm with normal morphology



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means59.9   %
Median of the strain means59.3   %
SD of the strain means± 9.78
Coefficient of variation (CV)0.163
Min–max range of strain means45.2   –   73.7   %
Mean sample size per strain13.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 9137.9421 1305.4203 12.5242 < 0.0001
Residuals 103 10735.8368 104.2314


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 59.5 12.8   17 3.1 0.215 38.5, 79.8 -0.04
A/J m 54.9 7.56   14 2.02 0.138 40.3, 69.3 -0.51
C57BL/6J m 59.1 6.23   11 1.88 0.105 45.7, 66.2 -0.08
CAST/EiJ m 45.2 8.6   10 2.72 0.19 32.7, 61.1 -1.5
NOD/ShiLtJ m 62.1 12.0   10 3.8 0.193 31.1, 72.2 0.22
NZO/HlLtJ m 51.9 7.67   19 1.76 0.148 40.0, 62.6 -0.82
PWK/PhJ m 73.7 8.12   12 2.34 0.11 62.9, 88.6 1.41
WSB/EiJ m 72.9 13.8   18 3.26 0.189 50.9, 92.5 1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 59.4941 2.4761 64.405 54.5833
A/J m 54.8714 2.7286 60.2829 49.46
C57BL/6J m 59.0818 3.0782 65.1868 52.9768
CAST/EiJ m 45.21 3.2285 51.6129 38.8071
NOD/ShiLtJ m 62.06 3.2285 68.4629 55.6571
NZO/HlLtJ m 51.8632 2.3422 56.5083 47.218
PWK/PhJ m 73.725 2.9472 79.5701 67.8799
WSB/EiJ m 72.9389 2.4064 77.7114 68.1664




  GWAS USING LINEAR MIXED MODELS