Project measure / variable:   HMDPpheno10   glycylisoleucine

ID, description, units MPD:50524   glycylisoleucine   glycylisoleucine (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   92 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - glycylisoleucine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested92 strains
Mean of the strain means51249   None
Median of the strain means48824   None
SD of the strain means± 23047
Coefficient of variation (CV)0.450
Min–max range of strain means18259   –   155860   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 26153027968.7297 1307651398.4365 2.76 0.0047
Residuals 33 15635169289.2103 473793008.7639


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 49053.0 0.0   1   0.0 0.0 49053.0, 49053.0 -0.1
A/J m 48601.0 28868.0   2   20413.0 0.594 28188.0, 69013.0 -0.11
AXB10/PgnJ m 42464.0 0.0   1   0.0 0.0 42464.0, 42464.0 -0.38
AXB12/PgnJ m 36526.0 0.0   1   0.0 0.0 36526.0, 36526.0 -0.64
AXB13/PgnJ m 84898.0 0.0   1   0.0 0.0 84898.0, 84898.0 1.46
AXB15/PgnJ m 19426.0 0.0   1   0.0 0.0 19426.0, 19426.0 -1.38
AXB19a/PgnJ m 35643.0 0.0   1   0.0 0.0 35643.0, 35643.0 -0.68
AXB19b/PgnJ m 52696.0 20294.0   2   14350.0 0.385 38346.0, 67046.0 0.06
AXB19/PgnJ m 39499.0 0.0   1   0.0 0.0 39499.0, 39499.0 -0.51
AXB23/PgnJ m 37590.0 0.0   1   0.0 0.0 37590.0, 37590.0 -0.59
AXB24/PgnJ m 50502.0 21147.0   2   14953.0 0.419 35549.0, 65456.0 -0.03
AXB4/PgnJ m 81126.0 0.0   1   0.0 0.0 81126.0, 81126.0 1.3
AXB5/PgnJ m 67403.0 0.0   1   0.0 0.0 67403.0, 67403.0 0.7
AXB6/PgnJ m 67459.0 0.0   1   0.0 0.0 67459.0, 67459.0 0.7
AXB8/PgnJ m 32685.0 0.0   1   0.0 0.0 32685.0, 32685.0 -0.81
BALB/cJ m 53307.0 14154.0   3 8172.0 0.266 43397.0, 69516.0 0.09
BTBR T+ Itpr3tf/J m 24685.0 0.0   1   0.0 0.0 24685.0, 24685.0 -1.15
BXA11/PgnJ m 27877.0 0.0   1   0.0 0.0 27877.0, 27877.0 -1.01
BXA13/PgnJ m 42971.0 0.0   1   0.0 0.0 42971.0, 42971.0 -0.36
BXA14/PgnJ m 60295.0 0.0   1   0.0 0.0 60295.0, 60295.0 0.39
BXA16/PgnJ m 31072.0 16665.0   2   11784.0 0.536 19288.0, 42856.0 -0.88
BXA1/PgnJ m 65307.0 0.0   1   0.0 0.0 65307.0, 65307.0 0.61
BXA24/PgnJ m 71883.0 0.0   1   0.0 0.0 71883.0, 71883.0 0.9
BXA26/PgnJ m 75404.0 0.0   1   0.0 0.0 75404.0, 75404.0 1.05
BXA2/PgnJ m 68870.0 0.0   1   0.0 0.0 68870.0, 68870.0 0.76
BXA7/PgnJ m 86442.0 0.0   1   0.0 0.0 86442.0, 86442.0 1.53
BXA8/PgnJ m 45465.0 0.0   1   0.0 0.0 45465.0, 45465.0 -0.25
BXD11/TyJ m 50999.0 0.0   1   0.0 0.0 50999.0, 50999.0 -0.01
BXD12/TyJ m 33573.0 0.0   1   0.0 0.0 33573.0, 33573.0 -0.77
BXD13/TyJ m 20333.0 0.0   1   0.0 0.0 20333.0, 20333.0 -1.34
BXD14/TyJ m 63930.0 0.0   1   0.0 0.0 63930.0, 63930.0 0.55
BXD15/TyJ m 38106.0 0.0   1   0.0 0.0 38106.0, 38106.0 -0.57
BXD18/TyJ m 22002.0 0.0   1   0.0 0.0 22002.0, 22002.0 -1.27
BXD19/TyJ m 36243.0 0.0   1   0.0 0.0 36243.0, 36243.0 -0.65
BXD1/TyJ m 29660.0 0.0   1   0.0 0.0 29660.0, 29660.0 -0.94
BXD20/TyJ m 44596.0 0.0   1   0.0 0.0 44596.0, 44596.0 -0.29
BXD21/TyJ m 30250.0 0.0   1   0.0 0.0 30250.0, 30250.0 -0.91
BXD22/TyJ m 67421.0 0.0   1   0.0 0.0 67421.0, 67421.0 0.7
BXD24/TyJ m 22524.0 0.0   1   0.0 0.0 22524.0, 22524.0 -1.25
BXD28/TyJ m 71243.0 13615.0   2   9628.0 0.191 61615.0, 80870.0 0.87
BXD29-Tlr4lps-2J/J m 36399.0 0.0   1   0.0 0.0 36399.0, 36399.0 -0.64
BXD2/TyJ m 37761.0 0.0   1   0.0 0.0 37761.0, 37761.0 -0.59
BXD32/TyJ m 38814.0 0.0   1   0.0 0.0 38814.0, 38814.0 -0.54
BXD33/TyJ m 39160.0 0.0   1   0.0 0.0 39160.0, 39160.0 -0.52
BXD34/TyJ m 38884.0 0.0   1   0.0 0.0 38884.0, 38884.0 -0.54
BXD36/TyJ m 30099.0 0.0   1   0.0 0.0 30099.0, 30099.0 -0.92
BXD38/TyJ m 46385.0 0.0   1   0.0 0.0 46385.0, 46385.0 -0.21
BXD39/TyJ m 36670.0 0.0   1   0.0 0.0 36670.0, 36670.0 -0.63
BXD40/TyJ m 36558.0 0.0   1   0.0 0.0 36558.0, 36558.0 -0.64
BXD5/TyJ m 40864.0 0.0   1   0.0 0.0 40864.0, 40864.0 -0.45
BXD6/TyJ m 39202.0 0.0   1   0.0 0.0 39202.0, 39202.0 -0.52
BXD8/TyJ m 28860.0 0.0   1   0.0 0.0 28860.0, 28860.0 -0.97
BXH10/TyJ m 62711.0 0.0   1   0.0 0.0 62711.0, 62711.0 0.5
BXH19/TyJ m 22539.0 0.0   1   0.0 0.0 22539.0, 22539.0 -1.25
BXH20/KccJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
BXH22/KccJ m 49047.0 0.0   1   0.0 0.0 49047.0, 49047.0 -0.1
BXH2/TyJ m 50644.0 0.0   1   0.0 0.0 50644.0, 50644.0 -0.03
BXH4/TyJ m 47067.0 3028.0   2   2141.0 0.0643 44925.0, 49208.0 -0.18
BXH6/TyJ m 54387.0 0.0   1   0.0 0.0 54387.0, 54387.0 0.14
BXH7/TyJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
BXH8/TyJ m 77974.0 0.0   1   0.0 0.0 77974.0, 77974.0 1.16
C3H/HeJ m 58887.0 34306.0   2   24258.0 0.583 34629.0, 83145.0 0.33
C57BL/6J m 79865.0 28606.0   5 12793.0 0.358 45134.0, 124224.0 1.24
C58/J m 155860.0 0.0   1   0.0 0.0 155860.0, 155860.0 4.54
CAST/EiJ m 52077.0 0.0   1   0.0 0.0 52077.0, 52077.0 0.04
CBA/J m 67266.0 0.0   1   0.0 0.0 67266.0, 67266.0 0.69
CE/J m 57060.0 0.0   1   0.0 0.0 57060.0, 57060.0 0.25
CXB11/HiAJ m 27430.0 5597.0   2   3958.0 0.204 23472.0, 31388.0 -1.03
CXB12/HiAJ m 107648.0 24654.0   2   17433.0 0.229 90215.0, 125080.0 2.45
CXB13/HiAJ m 86458.0 33060.0   3 19087.0 0.382 56710.0, 122051.0 1.53
CXB1/ByJ m 67981.0 14805.0   3 8548.0 0.218 51779.0, 80807.0 0.73
CXB2/ByJ m 84359.0 5976.0   3 3450.0 0.0708 77560.0, 88776.0 1.44
CXB3/ByJ m 63469.0 7208.0   2   5097.0 0.114 58373.0, 68566.0 0.53
CXB4/ByJ m 68351.0 20678.0   2   14621.0 0.303 53730.0, 82973.0 0.74
CXB6/ByJ m 60145.0 22070.0   3 12742.0 0.367 34795.0, 75082.0 0.39
CXB7/ByJ m 63118.0 12344.0   2   8728.0 0.196 54389.0, 71846.0 0.51
CXB8/HiAJ m 111973.0 37523.0   3 21664.0 0.335 69958.0, 142146.0 2.63
CXB9/HiAJ m 77651.0 18686.0   3 10788.0 0.241 59101.0, 96470.0 1.15
DBA/2J m 33003.0 7406.0   4 3703.0 0.224 26246.0, 41254.0 -0.79
FVB/NJ m 34431.0 0.0   1   0.0 0.0 34431.0, 34431.0 -0.73
I/LnJ m 50026.0 0.0   1   0.0 0.0 50026.0, 50026.0 -0.05
KK/HlJ m 18259.0 0.0   1   0.0 0.0 18259.0, 18259.0 -1.43
MA/MyJ m 22520.0 0.0   1   0.0 0.0 22520.0, 22520.0 -1.25
NOD/ShiLtJ m 37126.0 0.0   1   0.0 0.0 37126.0, 37126.0 -0.61
NON/ShiLtJ m 81044.0 0.0   1   0.0 0.0 81044.0, 81044.0 1.29
NZW/LacJ m 50258.0 0.0   1   0.0 0.0 50258.0, 50258.0 -0.04
PL/J m 27868.0 0.0   1   0.0 0.0 27868.0, 27868.0 -1.01
RIIIS/J m 29727.0 0.0   1   0.0 0.0 29727.0, 29727.0 -0.93
SEA/GnJ m 77759.0 0.0   1   0.0 0.0 77759.0, 77759.0 1.15
SJL/J m 28333.0 0.0   1   0.0 0.0 28333.0, 28333.0 -0.99
SM/J m 54588.0 0.0   1   0.0 0.0 54588.0, 54588.0 0.14
SWR/J m 36281.0 0.0   1   0.0 0.0 36281.0, 36281.0 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 48600.55 15391.4426 79914.6754 17286.4246
AXB19b/PgnJ m 52695.6 15391.4426 84009.7254 21381.4746
AXB24/PgnJ m 50502.45 15391.4426 81816.5754 19188.3246
BALB/cJ m 53306.6667 12567.0602 78874.543 27738.7904
BXA16/PgnJ m 31072.4 15391.4426 62386.5254 0.0
BXD28/TyJ m 71242.9 15391.4426 102557.0254 39928.7746
BXH4/TyJ m 47066.55 15391.4426 78380.6754 15752.4246
C3H/HeJ m 58886.9 15391.4426 90201.0254 27572.7746
C57BL/6J m 79864.56 9734.403 99669.3518 60059.7682
CXB11/HiAJ m 27429.55 15391.4426 58743.6754 0.0
CXB12/HiAJ m 107647.55 15391.4426 138961.6754 76333.4246
CXB13/HiAJ m 86457.9 12567.0602 112025.7763 60890.0237
CXB1/ByJ m 67980.6333 12567.0602 93548.5096 42412.757
CXB2/ByJ m 84358.5667 12567.0602 109926.443 58790.6904
CXB3/ByJ m 63469.35 15391.4426 94783.4754 32155.2246
CXB4/ByJ m 68351.45 15391.4426 99665.5754 37037.3246
CXB6/ByJ m 60145.3333 12567.0602 85713.2096 34577.457
CXB7/ByJ m 63117.5 15391.4426 94431.6254 31803.3746
CXB8/HiAJ m 111973.0333 12567.0602 137540.9096 86405.157
CXB9/HiAJ m 77651.3 12567.0602 103219.1763 52083.4237
DBA/2J m 33003.45 10883.3934 55145.8804 10861.0196




  GWAS USING LINEAR MIXED MODELS