Project measure / variable:   HMDPpheno10   allantoin

ID, description, units MPD:50514   allantoin   liver allantoin (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver allantoin (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means668101   None
Median of the strain means649708   None
SD of the strain means± 204615
Coefficient of variation (CV)0.306
Min–max range of strain means133618   –   1342181   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1554098451047.97 74004688145.1414 2.7291 0.0045
Residuals 34 921978320259.375 27117009419.3934


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 393346.0 0.0   1   0.0 0.0 393346.0, 393346.0 -1.34
A/J m 956246.0 158897.0   2   112357.0 0.166 843889.0, 1068603.0 1.41
AKR/J m 1179226.0 0.0   1   0.0 0.0 1179226.0, 1179226.0 2.5
AXB10/PgnJ m 816992.0 0.0   1   0.0 0.0 816992.0, 816992.0 0.73
AXB12/PgnJ m 699792.0 0.0   1   0.0 0.0 699792.0, 699792.0 0.15
AXB13/PgnJ m 894991.0 0.0   1   0.0 0.0 894991.0, 894991.0 1.11
AXB15/PgnJ m 1018522.0 0.0   1   0.0 0.0 1018522.0, 1018522.0 1.71
AXB19a/PgnJ m 979204.0 0.0   1   0.0 0.0 979204.0, 979204.0 1.52
AXB19b/PgnJ m 1023395.0 282700.0   2   199899.0 0.276 823496.0, 1223294.0 1.74
AXB19/PgnJ m 992122.0 0.0   1   0.0 0.0 992122.0, 992122.0 1.58
AXB1/PgnJ m 793715.0 0.0   1   0.0 0.0 793715.0, 793715.0 0.61
AXB23/PgnJ m 931367.0 0.0   1   0.0 0.0 931367.0, 931367.0 1.29
AXB24/PgnJ m 537733.0 235871.0   2   166786.0 0.439 370947.0, 704519.0 -0.64
AXB2/PgnJ m 773129.0 0.0   1   0.0 0.0 773129.0, 773129.0 0.51
AXB4/PgnJ m 645565.0 0.0   1   0.0 0.0 645565.0, 645565.0 -0.11
AXB5/PgnJ m 460111.0 0.0   1   0.0 0.0 460111.0, 460111.0 -1.02
AXB6/PgnJ m 642606.0 0.0   1   0.0 0.0 642606.0, 642606.0 -0.12
AXB8/PgnJ m 833043.0 0.0   1   0.0 0.0 833043.0, 833043.0 0.81
BALB/cJ m 391262.0 46192.0   3 26669.0 0.118 356584.0, 443698.0 -1.35
BTBR T+ Itpr3tf/J m 370919.0 0.0   1   0.0 0.0 370919.0, 370919.0 -1.45
BUB/BnJ m 765652.0 0.0   1   0.0 0.0 765652.0, 765652.0 0.48
BXA11/PgnJ m 1342181.0 0.0   1   0.0 0.0 1342181.0, 1342181.0 3.29
BXA12/PgnJ m 889259.0 0.0   1   0.0 0.0 889259.0, 889259.0 1.08
BXA13/PgnJ m 946135.0 0.0   1   0.0 0.0 946135.0, 946135.0 1.36
BXA14/PgnJ m 1093720.0 0.0   1   0.0 0.0 1093720.0, 1093720.0 2.08
BXA16/PgnJ m 830640.0 420735.0   2   297505.0 0.507 533135.0, 1128144.0 0.79
BXA1/PgnJ m 677950.0 0.0   1   0.0 0.0 677950.0, 677950.0 0.05
BXA24/PgnJ m 905626.0 0.0   1   0.0 0.0 905626.0, 905626.0 1.16
BXA25/PgnJ m 794000.0 0.0   1   0.0 0.0 794000.0, 794000.0 0.62
BXA26/PgnJ m 877495.0 0.0   1   0.0 0.0 877495.0, 877495.0 1.02
BXA2/PgnJ m 594363.0 0.0   1   0.0 0.0 594363.0, 594363.0 -0.36
BXA4/PgnJ m 505066.0 0.0   1   0.0 0.0 505066.0, 505066.0 -0.8
BXA7/PgnJ m 666857.0 0.0   1   0.0 0.0 666857.0, 666857.0 -0.01
BXA8/PgnJ m 1019978.0 0.0   1   0.0 0.0 1019978.0, 1019978.0 1.72
BXD11/TyJ m 545714.0 0.0   1   0.0 0.0 545714.0, 545714.0 -0.6
BXD12/TyJ m 671817.0 0.0   1   0.0 0.0 671817.0, 671817.0 0.02
BXD13/TyJ m 520340.0 0.0   1   0.0 0.0 520340.0, 520340.0 -0.72
BXD14/TyJ m 601237.0 0.0   1   0.0 0.0 601237.0, 601237.0 -0.33
BXD15/TyJ m 725249.0 0.0   1   0.0 0.0 725249.0, 725249.0 0.28
BXD18/TyJ m 424223.0 0.0   1   0.0 0.0 424223.0, 424223.0 -1.19
BXD19/TyJ m 479546.0 208356.0   2   147330.0 0.434 332216.0, 626876.0 -0.92
BXD1/TyJ m 578107.0 0.0   1   0.0 0.0 578107.0, 578107.0 -0.44
BXD20/TyJ m 439919.0 0.0   1   0.0 0.0 439919.0, 439919.0 -1.12
BXD21/TyJ m 722963.0 0.0   1   0.0 0.0 722963.0, 722963.0 0.27
BXD22/TyJ m 498560.0 0.0   1   0.0 0.0 498560.0, 498560.0 -0.83
BXD24/TyJ m 294984.0 0.0   1   0.0 0.0 294984.0, 294984.0 -1.82
BXD24/TyJ-Cep290rd16/J m 444241.0 0.0   1   0.0 0.0 444241.0, 444241.0 -1.09
BXD28/TyJ m 648282.0 87138.0   2   61616.0 0.134 586666.0, 709898.0 -0.1
BXD29-Tlr4lps-2J/J m 786710.0 0.0   1   0.0 0.0 786710.0, 786710.0 0.58
BXD2/TyJ m 846059.0 0.0   1   0.0 0.0 846059.0, 846059.0 0.87
BXD32/TyJ m 746497.0 0.0   1   0.0 0.0 746497.0, 746497.0 0.38
BXD33/TyJ m 829442.0 0.0   1   0.0 0.0 829442.0, 829442.0 0.79
BXD34/TyJ m 133618.0 0.0   1   0.0 0.0 133618.0, 133618.0 -2.61
BXD36/TyJ m 791865.0 0.0   1   0.0 0.0 791865.0, 791865.0 0.6
BXD38/TyJ m 602062.0 0.0   1   0.0 0.0 602062.0, 602062.0 -0.32
BXD39/TyJ m 576297.0 0.0   1   0.0 0.0 576297.0, 576297.0 -0.45
BXD40/TyJ m 497394.0 0.0   1   0.0 0.0 497394.0, 497394.0 -0.83
BXD42/TyJ m 384926.0 0.0   1   0.0 0.0 384926.0, 384926.0 -1.38
BXD5/TyJ m 591810.0 0.0   1   0.0 0.0 591810.0, 591810.0 -0.37
BXD6/TyJ m 561596.0 0.0   1   0.0 0.0 561596.0, 561596.0 -0.52
BXD8/TyJ m 530704.0 0.0   1   0.0 0.0 530704.0, 530704.0 -0.67
BXD9/TyJ m 670177.0 0.0   1   0.0 0.0 670177.0, 670177.0 0.01
BXH10/TyJ m 405966.0 0.0   1   0.0 0.0 405966.0, 405966.0 -1.28
BXH19/TyJ m 597873.0 0.0   1   0.0 0.0 597873.0, 597873.0 -0.34
BXH20/KccJ m 617757.0 0.0   1   0.0 0.0 617757.0, 617757.0 -0.25
BXH22/KccJ m 754899.0 0.0   1   0.0 0.0 754899.0, 754899.0 0.42
BXH2/TyJ m 641531.0 0.0   1   0.0 0.0 641531.0, 641531.0 -0.13
BXH4/TyJ m 714713.0 101870.0   2   72033.0 0.143 642680.0, 786746.0 0.23
BXH6/TyJ m 985836.0 0.0   1   0.0 0.0 985836.0, 985836.0 1.55
BXH7/TyJ m 626498.0 0.0   1   0.0 0.0 626498.0, 626498.0 -0.2
BXH8/TyJ m 709815.0 0.0   1   0.0 0.0 709815.0, 709815.0 0.2
BXH9/TyJ m 793543.0 0.0   1   0.0 0.0 793543.0, 793543.0 0.61
C3H/HeJ m 576920.0 164186.0   2   116097.0 0.285 460823.0, 693017.0 -0.45
C57BL/6J m 649540.0 113001.0   5 50536.0 0.174 457139.0, 755150.0 -0.09
C57L/J m 427320.0 0.0   1   0.0 0.0 427320.0, 427320.0 -1.18
C58/J m 673786.0 0.0   1   0.0 0.0 673786.0, 673786.0 0.03
CAST/EiJ m 403347.0 0.0   1   0.0 0.0 403347.0, 403347.0 -1.29
CBA/J m 395503.0 0.0   1   0.0 0.0 395503.0, 395503.0 -1.33
CE/J m 771527.0 0.0   1   0.0 0.0 771527.0, 771527.0 0.51
CXB11/HiAJ m 720281.0 232442.0   2   164361.0 0.323 555919.0, 884642.0 0.26
CXB12/HiAJ m 401352.0 75864.0   2   53644.0 0.189 347708.0, 454996.0 -1.3
CXB13/HiAJ m 460759.0 141831.0   3 81886.0 0.308 297420.0, 552734.0 -1.01
CXB1/ByJ m 754764.0 157803.0   3 91108.0 0.209 647031.0, 935898.0 0.42
CXB2/ByJ m 620697.0 156007.0   3 90071.0 0.251 444115.0, 739849.0 -0.23
CXB3/ByJ m 764361.0 129819.0   2   91796.0 0.17 672565.0, 856157.0 0.47
CXB4/ByJ m 767880.0 91627.0   2   64790.0 0.119 703090.0, 832671.0 0.49
CXB6/ByJ m 625047.0 173205.0   3 100000.0 0.277 438668.0, 781063.0 -0.21
CXB7/ByJ m 865609.0 176420.0   2   124748.0 0.204 740861.0, 990357.0 0.97
CXB8/HiAJ m 691887.0 58094.0   3 33541.0 0.084 656811.0, 758945.0 0.12
CXB9/HiAJ m 483107.0 203476.0   3 117477.0 0.421 286343.0, 692689.0 -0.9
DBA/2J m 416887.0 109619.0   4 54809.0 0.263 274328.0, 540710.0 -1.23
FVB/NJ m 565963.0 0.0   1   0.0 0.0 565963.0, 565963.0 -0.5
I/LnJ m 628391.0 0.0   1   0.0 0.0 628391.0, 628391.0 -0.19
KK/HlJ m 758136.0 0.0   1   0.0 0.0 758136.0, 758136.0 0.44
LG/J m 649876.0 0.0   1   0.0 0.0 649876.0, 649876.0 -0.09
LP/J m 553256.0 0.0   1   0.0 0.0 553256.0, 553256.0 -0.56
MA/MyJ m 865766.0 0.0   1   0.0 0.0 865766.0, 865766.0 0.97
NOD/ShiLtJ m 390383.0 0.0   1   0.0 0.0 390383.0, 390383.0 -1.36
NON/ShiLtJ m 562227.0 0.0   1   0.0 0.0 562227.0, 562227.0 -0.52
NZW/LacJ m 625448.0 0.0   1   0.0 0.0 625448.0, 625448.0 -0.21
PL/J m 796861.0 0.0   1   0.0 0.0 796861.0, 796861.0 0.63
RIIIS/J m 744868.0 0.0   1   0.0 0.0 744868.0, 744868.0 0.38
SEA/GnJ m 535906.0 0.0   1   0.0 0.0 535906.0, 535906.0 -0.65
SJL/J m 411718.0 0.0   1   0.0 0.0 411718.0, 411718.0 -1.25
SM/J m 365884.0 0.0   1   0.0 0.0 365884.0, 365884.0 -1.48
SWR/J m 658506.0 0.0   1   0.0 0.0 658506.0, 658506.0 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 956245.85 116440.9924 1192882.4175 719609.2825
AXB19b/PgnJ m 1023395.35 116440.9924 1260031.9175 786758.7825
AXB24/PgnJ m 537733.1 116440.9924 774369.6675 301096.5325
BALB/cJ m 391261.9667 95073.6722 584474.9149 198049.0184
BXA16/PgnJ m 830639.6 116440.9924 1067276.1675 594003.0325
BXD19/TyJ m 479545.85 116440.9924 716182.4175 242909.2825
BXD28/TyJ m 648281.9 116440.9924 884918.4675 411645.3325
BXH4/TyJ m 714713.05 116440.9924 951349.6175 478076.4825
C3H/HeJ m 576919.75 116440.9924 813556.3175 340283.1825
C57BL/6J m 649540.28 73643.7498 799202.3862 499878.1738
CXB11/HiAJ m 720280.6 116440.9924 956917.1675 483644.0325
CXB12/HiAJ m 401351.95 116440.9924 637988.5175 164715.3825
CXB13/HiAJ m 460758.9333 95073.6722 653971.8816 267545.9851
CXB1/ByJ m 754764.2333 95073.6722 947977.1816 561551.2851
CXB2/ByJ m 620696.6667 95073.6722 813909.6149 427483.7184
CXB3/ByJ m 764360.85 116440.9924 1000997.4175 527724.2825
CXB4/ByJ m 767880.45 116440.9924 1004517.0175 531243.8825
CXB6/ByJ m 625047.4 95073.6722 818260.3482 431834.4518
CXB7/ByJ m 865608.75 116440.9924 1102245.3175 628972.1825
CXB8/HiAJ m 691887.4 95073.6722 885100.3482 498674.4518
CXB9/HiAJ m 483107.3333 95073.6722 676320.2816 289894.3851
DBA/2J m 416887.45 82336.2153 584214.7715 249560.1285




  GWAS USING LINEAR MIXED MODELS