Project measure / variable:   HMDPpheno10   AMP_2

ID, description, units MPD:50509   AMP_2   liver adenosine 2'-monophosphate (2'-AMP) (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver adenosine 2'-monophosphate (2'-AMP) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1699769   None
Median of the strain means1717190   None
SD of the strain means± 375883
Coefficient of variation (CV)0.221
Min–max range of strain means486516   –   2537594   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3201494569670.79 152452122365.276 1.9721 0.0379
Residuals 34 2628364312164.78 77304832710.7289


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1707179.0 0.0   1   0.0 0.0 1707179.0, 1707179.0 0.02
A/J m 2210855.0 172881.0   2   122245.0 0.0782 2088610.0, 2333100.0 1.36
AKR/J m 1847085.0 0.0   1   0.0 0.0 1847085.0, 1847085.0 0.39
AXB10/PgnJ m 1463661.0 0.0   1   0.0 0.0 1463661.0, 1463661.0 -0.63
AXB12/PgnJ m 1413785.0 0.0   1   0.0 0.0 1413785.0, 1413785.0 -0.76
AXB13/PgnJ m 2448173.0 0.0   1   0.0 0.0 2448173.0, 2448173.0 1.99
AXB15/PgnJ m 1450351.0 0.0   1   0.0 0.0 1450351.0, 1450351.0 -0.66
AXB19a/PgnJ m 1906970.0 0.0   1   0.0 0.0 1906970.0, 1906970.0 0.55
AXB19b/PgnJ m 1978436.0 100678.0   2   71190.0 0.0509 1907246.0, 2049626.0 0.74
AXB19/PgnJ m 1572025.0 0.0   1   0.0 0.0 1572025.0, 1572025.0 -0.34
AXB1/PgnJ m 1605392.0 0.0   1   0.0 0.0 1605392.0, 1605392.0 -0.25
AXB23/PgnJ m 1636936.0 0.0   1   0.0 0.0 1636936.0, 1636936.0 -0.17
AXB24/PgnJ m 1539013.0 11212.0   2   7928.0 0.00729 1531085.0, 1546942.0 -0.43
AXB2/PgnJ m 1679329.0 0.0   1   0.0 0.0 1679329.0, 1679329.0 -0.05
AXB4/PgnJ m 1762284.0 0.0   1   0.0 0.0 1762284.0, 1762284.0 0.17
AXB5/PgnJ m 1282925.0 0.0   1   0.0 0.0 1282925.0, 1282925.0 -1.11
AXB6/PgnJ m 1618274.0 0.0   1   0.0 0.0 1618274.0, 1618274.0 -0.22
AXB8/PgnJ m 1599444.0 0.0   1   0.0 0.0 1599444.0, 1599444.0 -0.27
BALB/cJ m 1874137.0 173616.0   3 100238.0 0.0926 1699419.0, 2046630.0 0.46
BTBR T+ Itpr3tf/J m 1768202.0 0.0   1   0.0 0.0 1768202.0, 1768202.0 0.18
BUB/BnJ m 1137766.0 0.0   1   0.0 0.0 1137766.0, 1137766.0 -1.5
BXA11/PgnJ m 2282799.0 0.0   1   0.0 0.0 2282799.0, 2282799.0 1.55
BXA12/PgnJ m 1479197.0 0.0   1   0.0 0.0 1479197.0, 1479197.0 -0.59
BXA13/PgnJ m 2116244.0 0.0   1   0.0 0.0 2116244.0, 2116244.0 1.11
BXA14/PgnJ m 1433507.0 0.0   1   0.0 0.0 1433507.0, 1433507.0 -0.71
BXA16/PgnJ m 1795904.0 139702.0   2   98784.0 0.0778 1697120.0, 1894688.0 0.26
BXA1/PgnJ m 2337261.0 0.0   1   0.0 0.0 2337261.0, 2337261.0 1.7
BXA24/PgnJ m 1852016.0 0.0   1   0.0 0.0 1852016.0, 1852016.0 0.41
BXA25/PgnJ m 1611172.0 0.0   1   0.0 0.0 1611172.0, 1611172.0 -0.24
BXA26/PgnJ m 1691260.0 0.0   1   0.0 0.0 1691260.0, 1691260.0 -0.02
BXA2/PgnJ m 1816068.0 0.0   1   0.0 0.0 1816068.0, 1816068.0 0.31
BXA4/PgnJ m 1702793.0 0.0   1   0.0 0.0 1702793.0, 1702793.0 0.01
BXA7/PgnJ m 1462402.0 0.0   1   0.0 0.0 1462402.0, 1462402.0 -0.63
BXA8/PgnJ m 1685268.0 0.0   1   0.0 0.0 1685268.0, 1685268.0 -0.04
BXD11/TyJ m 2396952.0 0.0   1   0.0 0.0 2396952.0, 2396952.0 1.85
BXD12/TyJ m 992128.0 0.0   1   0.0 0.0 992128.0, 992128.0 -1.88
BXD13/TyJ m 1377665.0 0.0   1   0.0 0.0 1377665.0, 1377665.0 -0.86
BXD14/TyJ m 1366913.0 0.0   1   0.0 0.0 1366913.0, 1366913.0 -0.89
BXD15/TyJ m 1691406.0 0.0   1   0.0 0.0 1691406.0, 1691406.0 -0.02
BXD18/TyJ m 1249714.0 0.0   1   0.0 0.0 1249714.0, 1249714.0 -1.2
BXD19/TyJ m 1713744.0 614032.0   2   434186.0 0.358 1279558.0, 2147930.0 0.04
BXD1/TyJ m 1720637.0 0.0   1   0.0 0.0 1720637.0, 1720637.0 0.06
BXD20/TyJ m 2138489.0 0.0   1   0.0 0.0 2138489.0, 2138489.0 1.17
BXD21/TyJ m 1408202.0 0.0   1   0.0 0.0 1408202.0, 1408202.0 -0.78
BXD22/TyJ m 1963914.0 0.0   1   0.0 0.0 1963914.0, 1963914.0 0.7
BXD24/TyJ m 2213501.0 0.0   1   0.0 0.0 2213501.0, 2213501.0 1.37
BXD24/TyJ-Cep290rd16/J m 1766970.0 0.0   1   0.0 0.0 1766970.0, 1766970.0 0.18
BXD28/TyJ m 1431059.0 280839.0   2   198583.0 0.196 1232476.0, 1629642.0 -0.71
BXD29-Tlr4lps-2J/J m 2396197.0 0.0   1   0.0 0.0 2396197.0, 2396197.0 1.85
BXD2/TyJ m 1847139.0 0.0   1   0.0 0.0 1847139.0, 1847139.0 0.39
BXD32/TyJ m 1595367.0 0.0   1   0.0 0.0 1595367.0, 1595367.0 -0.28
BXD33/TyJ m 1250480.0 0.0   1   0.0 0.0 1250480.0, 1250480.0 -1.2
BXD34/TyJ m 1369039.0 0.0   1   0.0 0.0 1369039.0, 1369039.0 -0.88
BXD36/TyJ m 930023.0 0.0   1   0.0 0.0 930023.0, 930023.0 -2.05
BXD38/TyJ m 1265917.0 0.0   1   0.0 0.0 1265917.0, 1265917.0 -1.15
BXD39/TyJ m 2050947.0 0.0   1   0.0 0.0 2050947.0, 2050947.0 0.93
BXD40/TyJ m 1235593.0 0.0   1   0.0 0.0 1235593.0, 1235593.0 -1.23
BXD42/TyJ m 1737321.0 0.0   1   0.0 0.0 1737321.0, 1737321.0 0.1
BXD5/TyJ m 2252801.0 0.0   1   0.0 0.0 2252801.0, 2252801.0 1.47
BXD6/TyJ m 1348771.0 0.0   1   0.0 0.0 1348771.0, 1348771.0 -0.93
BXD8/TyJ m 1376688.0 0.0   1   0.0 0.0 1376688.0, 1376688.0 -0.86
BXD9/TyJ m 1888608.0 0.0   1   0.0 0.0 1888608.0, 1888608.0 0.5
BXH10/TyJ m 2036430.0 0.0   1   0.0 0.0 2036430.0, 2036430.0 0.9
BXH19/TyJ m 1885191.0 0.0   1   0.0 0.0 1885191.0, 1885191.0 0.49
BXH20/KccJ m 1742524.0 0.0   1   0.0 0.0 1742524.0, 1742524.0 0.11
BXH22/KccJ m 2327915.0 0.0   1   0.0 0.0 2327915.0, 2327915.0 1.67
BXH2/TyJ m 1746314.0 0.0   1   0.0 0.0 1746314.0, 1746314.0 0.12
BXH4/TyJ m 1788917.0 3963.0   2   2802.0 0.00222 1786115.0, 1791719.0 0.24
BXH6/TyJ m 1131900.0 0.0   1   0.0 0.0 1131900.0, 1131900.0 -1.51
BXH7/TyJ m 1275470.0 0.0   1   0.0 0.0 1275470.0, 1275470.0 -1.13
BXH8/TyJ m 2082196.0 0.0   1   0.0 0.0 2082196.0, 2082196.0 1.02
BXH9/TyJ m 2154633.0 0.0   1   0.0 0.0 2154633.0, 2154633.0 1.21
C3H/HeJ m 1817091.0 62277.0   2   44037.0 0.0343 1773054.0, 1861128.0 0.31
C57BL/6J m 1500969.0 158648.0   5 70950.0 0.106 1340120.0, 1702158.0 -0.53
C57L/J m 486516.0 0.0   1   0.0 0.0 486516.0, 486516.0 -3.23
C58/J m 1239845.0 0.0   1   0.0 0.0 1239845.0, 1239845.0 -1.22
CAST/EiJ m 1431288.0 0.0   1   0.0 0.0 1431288.0, 1431288.0 -0.71
CBA/J m 1419579.0 0.0   1   0.0 0.0 1419579.0, 1419579.0 -0.75
CE/J m 1954665.0 0.0   1   0.0 0.0 1954665.0, 1954665.0 0.68
CXB11/HiAJ m 1372673.0 114178.0   2   80736.0 0.0832 1291937.0, 1453409.0 -0.87
CXB12/HiAJ m 2118232.0 95629.0   2   67620.0 0.0451 2050612.0, 2185852.0 1.11
CXB13/HiAJ m 1952737.0 585346.0   3 337950.0 0.3 1394862.0, 2562147.0 0.67
CXB1/ByJ m 1900698.0 69340.0   3 40033.0 0.0365 1848607.0, 1979402.0 0.53
CXB2/ByJ m 1985347.0 559831.0   3 323219.0 0.282 1354322.0, 2422379.0 0.76
CXB3/ByJ m 1794504.0 13583.0   2   9605.0 0.00757 1784900.0, 1804109.0 0.25
CXB4/ByJ m 2328982.0 219053.0   2   154894.0 0.0941 2174088.0, 2483876.0 1.67
CXB6/ByJ m 1860038.0 156192.0   3 90178.0 0.084 1716394.0, 2026311.0 0.43
CXB7/ByJ m 2094937.0 307854.0   2   217686.0 0.147 1877252.0, 2312623.0 1.05
CXB8/HiAJ m 2215889.0 405962.0   3 234382.0 0.183 1831253.0, 2640255.0 1.37
CXB9/HiAJ m 1813319.0 154365.0   3 89123.0 0.0851 1699430.0, 1989009.0 0.3
DBA/2J m 1915937.0 108094.0   4 54047.0 0.0564 1816750.0, 2051982.0 0.58
FVB/NJ m 1424556.0 0.0   1   0.0 0.0 1424556.0, 1424556.0 -0.73
I/LnJ m 906600.0 0.0   1   0.0 0.0 906600.0, 906600.0 -2.11
KK/HlJ m 1296023.0 0.0   1   0.0 0.0 1296023.0, 1296023.0 -1.07
LG/J m 1087022.0 0.0   1   0.0 0.0 1087022.0, 1087022.0 -1.63
LP/J m 1445168.0 0.0   1   0.0 0.0 1445168.0, 1445168.0 -0.68
MA/MyJ m 1826006.0 0.0   1   0.0 0.0 1826006.0, 1826006.0 0.34
NOD/ShiLtJ m 2537594.0 0.0   1   0.0 0.0 2537594.0, 2537594.0 2.23
NON/ShiLtJ m 1726555.0 0.0   1   0.0 0.0 1726555.0, 1726555.0 0.07
NZW/LacJ m 1158143.0 0.0   1   0.0 0.0 1158143.0, 1158143.0 -1.44
PL/J m 1905069.0 0.0   1   0.0 0.0 1905069.0, 1905069.0 0.55
RIIIS/J m 1622356.0 0.0   1   0.0 0.0 1622356.0, 1622356.0 -0.21
SEA/GnJ m 2013963.0 0.0   1   0.0 0.0 2013963.0, 2013963.0 0.84
SJL/J m 1557978.0 0.0   1   0.0 0.0 1557978.0, 1557978.0 -0.38
SM/J m 1589516.0 0.0   1   0.0 0.0 1589516.0, 1589516.0 -0.29
SWR/J m 1959962.0 0.0   1   0.0 0.0 1959962.0, 1959962.0 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2210855.0 196602.1779 2610398.6966 1811311.3034
AXB19b/PgnJ m 1978436.05 196602.1779 2377979.7466 1578892.3534
AXB24/PgnJ m 1539013.45 196602.1779 1938557.1466 1139469.7534
BALB/cJ m 1874136.6333 160525.0061 2200362.6955 1547910.5712
BXA16/PgnJ m 1795903.95 196602.1779 2195447.6466 1396360.2534
BXD19/TyJ m 1713743.65 196602.1779 2113287.3466 1314199.9534
BXD28/TyJ m 1431059.45 196602.1779 1830603.1466 1031515.7534
BXH4/TyJ m 1788917.1 196602.1779 2188460.7966 1389373.4034
C3H/HeJ m 1817091.05 196602.1779 2216634.7466 1417547.3534
C57BL/6J m 1500968.94 124342.135 1753662.5612 1248275.3188
CXB11/HiAJ m 1372672.8 196602.1779 1772216.4966 973129.1034
CXB12/HiAJ m 2118232.15 196602.1779 2517775.8466 1718688.4534
CXB13/HiAJ m 1952736.8333 160525.0061 2278962.8955 1626510.7712
CXB1/ByJ m 1900697.7333 160525.0061 2226923.7955 1574471.6712
CXB2/ByJ m 1985346.5333 160525.0061 2311572.5955 1659120.4712
CXB3/ByJ m 1794504.25 196602.1779 2194047.9466 1394960.5534
CXB4/ByJ m 2328981.9 196602.1779 2728525.5966 1929438.2034
CXB6/ByJ m 1860038.2333 160525.0061 2186264.2955 1533812.1712
CXB7/ByJ m 2094937.15 196602.1779 2494480.8466 1695393.4534
CXB8/HiAJ m 2215888.8 160525.0061 2542114.8622 1889662.7378
CXB9/HiAJ m 1813319.1333 160525.0061 2139545.1955 1487093.0712
DBA/2J m 1915936.625 139018.7332 2198456.6822 1633416.5678




  GWAS USING LINEAR MIXED MODELS