Project measure / variable:   HMDPpheno10   methylphosphate

ID, description, units MPD:50501   methylphosphate   liver methylphosphate (16h fast), relative abundance    
Data set, strains HMDPpheno10   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno10 - liver methylphosphate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means458938   None
Median of the strain means439105   None
SD of the strain means± 110445
Coefficient of variation (CV)0.241
Min–max range of strain means293240   –   1152286   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 195802937915.021 9323949424.5248 1.7764 0.0662
Residuals 34 178455686660.498 5248696666.4852


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 456873.0 0.0   1   0.0 0.0 456873.0, 456873.0 -0.02
A/J m 470457.0 1081.0   2   764.0 0.0023 469692.0, 471221.0 0.1
AKR/J m 401582.0 0.0   1   0.0 0.0 401582.0, 401582.0 -0.52
AXB10/PgnJ m 397992.0 0.0   1   0.0 0.0 397992.0, 397992.0 -0.55
AXB12/PgnJ m 352535.0 0.0   1   0.0 0.0 352535.0, 352535.0 -0.96
AXB13/PgnJ m 341890.0 0.0   1   0.0 0.0 341890.0, 341890.0 -1.06
AXB15/PgnJ m 475212.0 0.0   1   0.0 0.0 475212.0, 475212.0 0.15
AXB19a/PgnJ m 489531.0 0.0   1   0.0 0.0 489531.0, 489531.0 0.28
AXB19b/PgnJ m 439316.0 195349.0   2   138133.0 0.445 301184.0, 577449.0 -0.18
AXB19/PgnJ m 587328.0 0.0   1   0.0 0.0 587328.0, 587328.0 1.16
AXB1/PgnJ m 438894.0 0.0   1   0.0 0.0 438894.0, 438894.0 -0.18
AXB23/PgnJ m 454372.0 0.0   1   0.0 0.0 454372.0, 454372.0 -0.04
AXB24/PgnJ m 508064.0 155254.0   2   109781.0 0.306 398283.0, 617844.0 0.44
AXB2/PgnJ m 503750.0 0.0   1   0.0 0.0 503750.0, 503750.0 0.41
AXB4/PgnJ m 490634.0 0.0   1   0.0 0.0 490634.0, 490634.0 0.29
AXB5/PgnJ m 403742.0 0.0   1   0.0 0.0 403742.0, 403742.0 -0.5
AXB6/PgnJ m 428343.0 0.0   1   0.0 0.0 428343.0, 428343.0 -0.28
AXB8/PgnJ m 384367.0 0.0   1   0.0 0.0 384367.0, 384367.0 -0.68
BALB/cJ m 450583.0 25340.0   3 14630.0 0.0562 435917.0, 479844.0 -0.08
BTBR T+ Itpr3tf/J m 461754.0 0.0   1   0.0 0.0 461754.0, 461754.0 0.03
BUB/BnJ m 482616.0 0.0   1   0.0 0.0 482616.0, 482616.0 0.21
BXA11/PgnJ m 502006.0 0.0   1   0.0 0.0 502006.0, 502006.0 0.39
BXA12/PgnJ m 416100.0 0.0   1   0.0 0.0 416100.0, 416100.0 -0.39
BXA13/PgnJ m 413527.0 0.0   1   0.0 0.0 413527.0, 413527.0 -0.41
BXA14/PgnJ m 475596.0 0.0   1   0.0 0.0 475596.0, 475596.0 0.15
BXA16/PgnJ m 408730.0 11410.0   2   8068.0 0.0279 400662.0, 416798.0 -0.45
BXA1/PgnJ m 409190.0 0.0   1   0.0 0.0 409190.0, 409190.0 -0.45
BXA24/PgnJ m 939817.0 0.0   1   0.0 0.0 939817.0, 939817.0 4.35
BXA25/PgnJ m 1152286.0 0.0   1   0.0 0.0 1152286.0, 1152286.0 6.28
BXA26/PgnJ m 323327.0 0.0   1   0.0 0.0 323327.0, 323327.0 -1.23
BXA2/PgnJ m 376734.0 0.0   1   0.0 0.0 376734.0, 376734.0 -0.74
BXA4/PgnJ m 379052.0 0.0   1   0.0 0.0 379052.0, 379052.0 -0.72
BXA7/PgnJ m 438473.0 0.0   1   0.0 0.0 438473.0, 438473.0 -0.19
BXA8/PgnJ m 446990.0 0.0   1   0.0 0.0 446990.0, 446990.0 -0.11
BXD11/TyJ m 499310.0 0.0   1   0.0 0.0 499310.0, 499310.0 0.37
BXD12/TyJ m 443586.0 0.0   1   0.0 0.0 443586.0, 443586.0 -0.14
BXD13/TyJ m 420694.0 0.0   1   0.0 0.0 420694.0, 420694.0 -0.35
BXD14/TyJ m 363792.0 0.0   1   0.0 0.0 363792.0, 363792.0 -0.86
BXD15/TyJ m 482869.0 0.0   1   0.0 0.0 482869.0, 482869.0 0.22
BXD18/TyJ m 293240.0 0.0   1   0.0 0.0 293240.0, 293240.0 -1.5
BXD19/TyJ m 385573.0 83242.0   2   58861.0 0.216 326712.0, 444434.0 -0.66
BXD1/TyJ m 393438.0 0.0   1   0.0 0.0 393438.0, 393438.0 -0.59
BXD20/TyJ m 367674.0 0.0   1   0.0 0.0 367674.0, 367674.0 -0.83
BXD21/TyJ m 394594.0 0.0   1   0.0 0.0 394594.0, 394594.0 -0.58
BXD22/TyJ m 505961.0 0.0   1   0.0 0.0 505961.0, 505961.0 0.43
BXD24/TyJ m 451694.0 0.0   1   0.0 0.0 451694.0, 451694.0 -0.07
BXD24/TyJ-Cep290rd16/J m 545733.0 0.0   1   0.0 0.0 545733.0, 545733.0 0.79
BXD28/TyJ m 392382.0 72945.0   2   51580.0 0.186 340802.0, 443962.0 -0.6
BXD29-Tlr4lps-2J/J m 353920.0 0.0   1   0.0 0.0 353920.0, 353920.0 -0.95
BXD2/TyJ m 372307.0 0.0   1   0.0 0.0 372307.0, 372307.0 -0.78
BXD32/TyJ m 392392.0 0.0   1   0.0 0.0 392392.0, 392392.0 -0.6
BXD33/TyJ m 525000.0 0.0   1   0.0 0.0 525000.0, 525000.0 0.6
BXD34/TyJ m 516731.0 0.0   1   0.0 0.0 516731.0, 516731.0 0.52
BXD36/TyJ m 646606.0 0.0   1   0.0 0.0 646606.0, 646606.0 1.7
BXD38/TyJ m 369608.0 0.0   1   0.0 0.0 369608.0, 369608.0 -0.81
BXD39/TyJ m 314309.0 0.0   1   0.0 0.0 314309.0, 314309.0 -1.31
BXD40/TyJ m 405221.0 0.0   1   0.0 0.0 405221.0, 405221.0 -0.49
BXD42/TyJ m 383898.0 0.0   1   0.0 0.0 383898.0, 383898.0 -0.68
BXD5/TyJ m 542212.0 0.0   1   0.0 0.0 542212.0, 542212.0 0.75
BXD6/TyJ m 465375.0 0.0   1   0.0 0.0 465375.0, 465375.0 0.06
BXD8/TyJ m 350974.0 0.0   1   0.0 0.0 350974.0, 350974.0 -0.98
BXD9/TyJ m 436235.0 0.0   1   0.0 0.0 436235.0, 436235.0 -0.21
BXH10/TyJ m 362987.0 0.0   1   0.0 0.0 362987.0, 362987.0 -0.87
BXH19/TyJ m 504496.0 0.0   1   0.0 0.0 504496.0, 504496.0 0.41
BXH20/KccJ m 513000.0 0.0   1   0.0 0.0 513000.0, 513000.0 0.49
BXH22/KccJ m 561267.0 0.0   1   0.0 0.0 561267.0, 561267.0 0.93
BXH2/TyJ m 473827.0 0.0   1   0.0 0.0 473827.0, 473827.0 0.13
BXH4/TyJ m 691453.0 76663.0   2   54209.0 0.111 637244.0, 745662.0 2.11
BXH6/TyJ m 423455.0 0.0   1   0.0 0.0 423455.0, 423455.0 -0.32
BXH7/TyJ m 455610.0 0.0   1   0.0 0.0 455610.0, 455610.0 -0.03
BXH8/TyJ m 583317.0 0.0   1   0.0 0.0 583317.0, 583317.0 1.13
BXH9/TyJ m 476384.0 0.0   1   0.0 0.0 476384.0, 476384.0 0.16
C3H/HeJ m 422830.0 18283.0   2   12928.0 0.0432 409902.0, 435758.0 -0.33
C57BL/6J m 447009.0 37375.0   5 16715.0 0.0836 412203.0, 509818.0 -0.11
C57L/J m 399527.0 0.0   1   0.0 0.0 399527.0, 399527.0 -0.54
C58/J m 504821.0 0.0   1   0.0 0.0 504821.0, 504821.0 0.42
CAST/EiJ m 441692.0 0.0   1   0.0 0.0 441692.0, 441692.0 -0.16
CBA/J m 423644.0 0.0   1   0.0 0.0 423644.0, 423644.0 -0.32
CE/J m 407493.0 0.0   1   0.0 0.0 407493.0, 407493.0 -0.47
CXB11/HiAJ m 389637.0 37508.0   2   26522.0 0.0963 363115.0, 416159.0 -0.63
CXB12/HiAJ m 445752.0 55169.0   2   39010.0 0.124 406742.0, 484763.0 -0.12
CXB13/HiAJ m 474085.0 71689.0   3 41389.0 0.151 429778.0, 556794.0 0.14
CXB1/ByJ m 433824.0 57216.0   3 33034.0 0.132 370512.0, 481832.0 -0.23
CXB2/ByJ m 421185.0 75618.0   3 43658.0 0.18 367906.0, 507733.0 -0.34
CXB3/ByJ m 419706.0 3399.0   2   2404.0 0.0081 417303.0, 422110.0 -0.36
CXB4/ByJ m 428156.0 28880.0   2   20422.0 0.0675 407734.0, 448577.0 -0.28
CXB6/ByJ m 420086.0 32584.0   3 18812.0 0.0776 391016.0, 455308.0 -0.35
CXB7/ByJ m 334360.0 32908.0   2   23270.0 0.0984 311091.0, 357630.0 -1.13
CXB8/HiAJ m 439516.0 70713.0   3 40826.0 0.161 386875.0, 519892.0 -0.18
CXB9/HiAJ m 403507.0 54362.0   3 31386.0 0.135 346639.0, 454957.0 -0.5
DBA/2J m 480226.0 112621.0   4 56310.0 0.235 381240.0, 629559.0 0.19
FVB/NJ m 611487.0 0.0   1   0.0 0.0 611487.0, 611487.0 1.38
I/LnJ m 641416.0 0.0   1   0.0 0.0 641416.0, 641416.0 1.65
KK/HlJ m 402008.0 0.0   1   0.0 0.0 402008.0, 402008.0 -0.52
LG/J m 548015.0 0.0   1   0.0 0.0 548015.0, 548015.0 0.81
LP/J m 402744.0 0.0   1   0.0 0.0 402744.0, 402744.0 -0.51
MA/MyJ m 554356.0 0.0   1   0.0 0.0 554356.0, 554356.0 0.86
NOD/ShiLtJ m 344309.0 0.0   1   0.0 0.0 344309.0, 344309.0 -1.04
NON/ShiLtJ m 556225.0 0.0   1   0.0 0.0 556225.0, 556225.0 0.88
NZW/LacJ m 411873.0 0.0   1   0.0 0.0 411873.0, 411873.0 -0.43
PL/J m 533107.0 0.0   1   0.0 0.0 533107.0, 533107.0 0.67
RIIIS/J m 536875.0 0.0   1   0.0 0.0 536875.0, 536875.0 0.71
SEA/GnJ m 399628.0 0.0   1   0.0 0.0 399628.0, 399628.0 -0.54
SJL/J m 435439.0 0.0   1   0.0 0.0 435439.0, 435439.0 -0.21
SM/J m 499744.0 0.0   1   0.0 0.0 499744.0, 499744.0 0.37
SWR/J m 470374.0 0.0   1   0.0 0.0 470374.0, 470374.0 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 470456.9 51228.3938 574565.5221 366348.2779
AXB19b/PgnJ m 439316.5 51228.3938 543425.1221 335207.8779
AXB24/PgnJ m 508063.5 51228.3938 612172.1221 403954.8779
BALB/cJ m 450583.4 41827.8084 535587.734 365579.066
BXA16/PgnJ m 408730.3 51228.3938 512838.9221 304621.6779
BXD19/TyJ m 385573.35 51228.3938 489681.9721 281464.7279
BXD28/TyJ m 392382.1 51228.3938 496490.7221 288273.4779
BXH4/TyJ m 691453.2 51228.3938 795561.8221 587344.5779
C3H/HeJ m 422829.8 51228.3938 526938.4221 318721.1779
C57BL/6J m 447009.44 32399.6811 512853.514 381165.366
CXB11/HiAJ m 389637.35 51228.3938 493745.9721 285528.7279
CXB12/HiAJ m 445752.35 51228.3938 549860.9721 341643.7279
CXB13/HiAJ m 474085.4333 41827.8084 559089.7673 389081.0994
CXB1/ByJ m 433824.0667 41827.8084 518828.4006 348819.7327
CXB2/ByJ m 421185.4 41827.8084 506189.734 336181.066
CXB3/ByJ m 419706.35 51228.3938 523814.9721 315597.7279
CXB4/ByJ m 428155.8 51228.3938 532264.4221 324047.1779
CXB6/ByJ m 420086.2333 41827.8084 505090.5673 335081.8994
CXB7/ByJ m 334360.25 51228.3938 438468.8721 230251.6279
CXB8/HiAJ m 439515.8333 41827.8084 524520.1673 354511.4994
CXB9/HiAJ m 403506.9333 41827.8084 488511.2673 318502.5994
DBA/2J m 480226.225 36223.9447 553842.1376 406610.3124




  GWAS USING LINEAR MIXED MODELS