Project measure / variable:   HMDPpheno9   SGPI

ID, description, units MPD:50432   SGPI   liver 1-stearoylglycerophosphoinositol (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-stearoylglycerophosphoinositol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1372662   None
Median of the strain means1376822   None
SD of the strain means± 306315
Coefficient of variation (CV)0.223
Min–max range of strain means607795   –   2577278   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 4382752009031.93 208702476620.568 1.1422 0.3563
Residuals 34 6212575038231.78 182722795242.111


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1190354.0 0.0   1   0.0 0.0 1190354.0, 1190354.0 -0.6
A/J m 914711.0 675254.0   2   477477.0 0.738 437234.0, 1392188.0 -1.5
AKR/J m 1130343.0 0.0   1   0.0 0.0 1130343.0, 1130343.0 -0.79
AXB10/PgnJ m 1284976.0 0.0   1   0.0 0.0 1284976.0, 1284976.0 -0.29
AXB12/PgnJ m 1575468.0 0.0   1   0.0 0.0 1575468.0, 1575468.0 0.66
AXB13/PgnJ m 697413.0 0.0   1   0.0 0.0 697413.0, 697413.0 -2.2
AXB15/PgnJ m 876815.0 0.0   1   0.0 0.0 876815.0, 876815.0 -1.62
AXB19a/PgnJ m 966725.0 0.0   1   0.0 0.0 966725.0, 966725.0 -1.33
AXB19b/PgnJ m 1179930.0 489383.0   2   346046.0 0.415 833884.0, 1525976.0 -0.63
AXB19/PgnJ m 1319980.0 0.0   1   0.0 0.0 1319980.0, 1319980.0 -0.17
AXB1/PgnJ m 607795.0 0.0   1   0.0 0.0 607795.0, 607795.0 -2.5
AXB23/PgnJ m 1703927.0 0.0   1   0.0 0.0 1703927.0, 1703927.0 1.08
AXB24/PgnJ m 1479600.0 99820.0   2   70583.0 0.0675 1409017.0, 1550184.0 0.35
AXB2/PgnJ m 1753088.0 0.0   1   0.0 0.0 1753088.0, 1753088.0 1.24
AXB4/PgnJ m 1359808.0 0.0   1   0.0 0.0 1359808.0, 1359808.0 -0.04
AXB5/PgnJ m 1236082.0 0.0   1   0.0 0.0 1236082.0, 1236082.0 -0.45
AXB6/PgnJ m 1400160.0 0.0   1   0.0 0.0 1400160.0, 1400160.0 0.09
AXB8/PgnJ m 1684209.0 0.0   1   0.0 0.0 1684209.0, 1684209.0 1.02
BALB/cJ m 1384273.0 258855.0   3 149450.0 0.187 1128480.0, 1646085.0 0.04
BTBR T+ Itpr3tf/J m 717679.0 0.0   1   0.0 0.0 717679.0, 717679.0 -2.14
BUB/BnJ m 1926324.0 0.0   1   0.0 0.0 1926324.0, 1926324.0 1.81
BXA11/PgnJ m 1449001.0 0.0   1   0.0 0.0 1449001.0, 1449001.0 0.25
BXA12/PgnJ m 1814033.0 0.0   1   0.0 0.0 1814033.0, 1814033.0 1.44
BXA13/PgnJ m 1387603.0 0.0   1   0.0 0.0 1387603.0, 1387603.0 0.05
BXA14/PgnJ m 1065023.0 0.0   1   0.0 0.0 1065023.0, 1065023.0 -1.0
BXA16/PgnJ m 1432124.0 92115.0   2   65135.0 0.0643 1366989.0, 1497259.0 0.19
BXA1/PgnJ m 2166712.0 0.0   1   0.0 0.0 2166712.0, 2166712.0 2.59
BXA24/PgnJ m 1280104.0 0.0   1   0.0 0.0 1280104.0, 1280104.0 -0.3
BXA25/PgnJ m 1448246.0 0.0   1   0.0 0.0 1448246.0, 1448246.0 0.25
BXA26/PgnJ m 2577278.0 0.0   1   0.0 0.0 2577278.0, 2577278.0 3.93
BXA2/PgnJ m 1375646.0 0.0   1   0.0 0.0 1375646.0, 1375646.0 0.01
BXA4/PgnJ m 1131107.0 0.0   1   0.0 0.0 1131107.0, 1131107.0 -0.79
BXA7/PgnJ m 734795.0 0.0   1   0.0 0.0 734795.0, 734795.0 -2.08
BXA8/PgnJ m 1692746.0 0.0   1   0.0 0.0 1692746.0, 1692746.0 1.04
BXD11/TyJ m 771466.0 0.0   1   0.0 0.0 771466.0, 771466.0 -1.96
BXD12/TyJ m 1079832.0 0.0   1   0.0 0.0 1079832.0, 1079832.0 -0.96
BXD13/TyJ m 1438878.0 0.0   1   0.0 0.0 1438878.0, 1438878.0 0.22
BXD14/TyJ m 1290630.0 0.0   1   0.0 0.0 1290630.0, 1290630.0 -0.27
BXD15/TyJ m 1517671.0 0.0   1   0.0 0.0 1517671.0, 1517671.0 0.47
BXD18/TyJ m 1377020.0 0.0   1   0.0 0.0 1377020.0, 1377020.0 0.01
BXD19/TyJ m 1353469.0 180999.0   2   127986.0 0.134 1225483.0, 1481454.0 -0.06
BXD1/TyJ m 1200954.0 0.0   1   0.0 0.0 1200954.0, 1200954.0 -0.56
BXD20/TyJ m 1414283.0 0.0   1   0.0 0.0 1414283.0, 1414283.0 0.14
BXD21/TyJ m 1195971.0 0.0   1   0.0 0.0 1195971.0, 1195971.0 -0.58
BXD22/TyJ m 1509583.0 0.0   1   0.0 0.0 1509583.0, 1509583.0 0.45
BXD24/TyJ m 1434708.0 0.0   1   0.0 0.0 1434708.0, 1434708.0 0.2
BXD24/TyJ-Cep290rd16/J m 1143823.0 0.0   1   0.0 0.0 1143823.0, 1143823.0 -0.75
BXD28/TyJ m 1368153.0 111610.0   2   78920.0 0.0816 1289234.0, 1447073.0 -0.01
BXD29-Tlr4lps-2J/J m 1216433.0 0.0   1   0.0 0.0 1216433.0, 1216433.0 -0.51
BXD2/TyJ m 1457062.0 0.0   1   0.0 0.0 1457062.0, 1457062.0 0.28
BXD32/TyJ m 1374985.0 0.0   1   0.0 0.0 1374985.0, 1374985.0 0.01
BXD33/TyJ m 1376996.0 0.0   1   0.0 0.0 1376996.0, 1376996.0 0.01
BXD34/TyJ m 1407668.0 0.0   1   0.0 0.0 1407668.0, 1407668.0 0.11
BXD36/TyJ m 1188155.0 0.0   1   0.0 0.0 1188155.0, 1188155.0 -0.6
BXD38/TyJ m 1563061.0 0.0   1   0.0 0.0 1563061.0, 1563061.0 0.62
BXD39/TyJ m 1414843.0 0.0   1   0.0 0.0 1414843.0, 1414843.0 0.14
BXD40/TyJ m 1691528.0 0.0   1   0.0 0.0 1691528.0, 1691528.0 1.04
BXD42/TyJ m 1196281.0 0.0   1   0.0 0.0 1196281.0, 1196281.0 -0.58
BXD5/TyJ m 1527162.0 0.0   1   0.0 0.0 1527162.0, 1527162.0 0.5
BXD6/TyJ m 1429104.0 0.0   1   0.0 0.0 1429104.0, 1429104.0 0.18
BXD8/TyJ m 1281655.0 0.0   1   0.0 0.0 1281655.0, 1281655.0 -0.3
BXD9/TyJ m 1589710.0 0.0   1   0.0 0.0 1589710.0, 1589710.0 0.71
BXH10/TyJ m 955925.0 0.0   1   0.0 0.0 955925.0, 955925.0 -1.36
BXH19/TyJ m 1392476.0 0.0   1   0.0 0.0 1392476.0, 1392476.0 0.06
BXH20/KccJ m 1320276.0 0.0   1   0.0 0.0 1320276.0, 1320276.0 -0.17
BXH22/KccJ m 1243291.0 0.0   1   0.0 0.0 1243291.0, 1243291.0 -0.42
BXH2/TyJ m 1397060.0 0.0   1   0.0 0.0 1397060.0, 1397060.0 0.08
BXH4/TyJ m 1262455.0 255796.0   2   180875.0 0.203 1081580.0, 1443330.0 -0.36
BXH6/TyJ m 1220913.0 0.0   1   0.0 0.0 1220913.0, 1220913.0 -0.5
BXH7/TyJ m 1188450.0 0.0   1   0.0 0.0 1188450.0, 1188450.0 -0.6
BXH8/TyJ m 1756872.0 0.0   1   0.0 0.0 1756872.0, 1756872.0 1.25
BXH9/TyJ m 1529700.0 0.0   1   0.0 0.0 1529700.0, 1529700.0 0.51
C3H/HeJ m 1457768.0 595871.0   2   421345.0 0.409 1036423.0, 1879113.0 0.28
C57BL/6J m 1238026.0 519112.0   5 232154.0 0.419 410213.0, 1632691.0 -0.44
C57L/J m 1883883.0 0.0   1   0.0 0.0 1883883.0, 1883883.0 1.67
C58/J m 1348059.0 0.0   1   0.0 0.0 1348059.0, 1348059.0 -0.08
CAST/EiJ m 796932.0 0.0   1   0.0 0.0 796932.0, 796932.0 -1.88
CBA/J m 1343003.0 0.0   1   0.0 0.0 1343003.0, 1343003.0 -0.1
CE/J m 1472621.0 0.0   1   0.0 0.0 1472621.0, 1472621.0 0.33
CXB11/HiAJ m 1397889.0 291755.0   2   206302.0 0.209 1191587.0, 1604191.0 0.08
CXB12/HiAJ m 1318379.0 482532.0   2   341202.0 0.366 977178.0, 1659581.0 -0.18
CXB13/HiAJ m 1822122.0 294673.0   3 170130.0 0.162 1635022.0, 2161796.0 1.47
CXB1/ByJ m 1791831.0 359549.0   3 207586.0 0.201 1556473.0, 2205704.0 1.37
CXB2/ByJ m 1587664.0 62327.0   3 35984.0 0.0393 1528819.0, 1652970.0 0.7
CXB3/ByJ m 1597403.0 154281.0   2   109093.0 0.0966 1488309.0, 1706496.0 0.73
CXB4/ByJ m 1585724.0 162585.0   2   114965.0 0.103 1470759.0, 1700689.0 0.7
CXB6/ByJ m 1149249.0 652567.0   3 376760.0 0.568 672113.0, 1892892.0 -0.73
CXB7/ByJ m 1300402.0 323057.0   2   228436.0 0.248 1071966.0, 1528838.0 -0.24
CXB8/HiAJ m 2250830.0 976466.0   3 563763.0 0.434 1559693.0, 3367912.0 2.87
CXB9/HiAJ m 1393749.0 260068.0   3 150150.0 0.187 1170185.0, 1679168.0 0.07
DBA/2J m 1267625.0 69640.0   4 34820.0 0.0549 1174549.0, 1322021.0 -0.34
FVB/NJ m 1514772.0 0.0   1   0.0 0.0 1514772.0, 1514772.0 0.46
I/LnJ m 1372241.0 0.0   1   0.0 0.0 1372241.0, 1372241.0 0.0
KK/HlJ m 1440068.0 0.0   1   0.0 0.0 1440068.0, 1440068.0 0.22
LG/J m 1342369.0 0.0   1   0.0 0.0 1342369.0, 1342369.0 -0.1
LP/J m 1121953.0 0.0   1   0.0 0.0 1121953.0, 1121953.0 -0.82
MA/MyJ m 1332166.0 0.0   1   0.0 0.0 1332166.0, 1332166.0 -0.13
NOD/ShiLtJ m 1686231.0 0.0   1   0.0 0.0 1686231.0, 1686231.0 1.02
NON/ShiLtJ m 1450687.0 0.0   1   0.0 0.0 1450687.0, 1450687.0 0.25
NZW/LacJ m 1165116.0 0.0   1   0.0 0.0 1165116.0, 1165116.0 -0.68
PL/J m 1399273.0 0.0   1   0.0 0.0 1399273.0, 1399273.0 0.09
RIIIS/J m 1115809.0 0.0   1   0.0 0.0 1115809.0, 1115809.0 -0.84
SEA/GnJ m 1376647.0 0.0   1   0.0 0.0 1376647.0, 1376647.0 0.01
SJL/J m 1025857.0 0.0   1   0.0 0.0 1025857.0, 1025857.0 -1.13
SM/J m 1385390.0 0.0   1   0.0 0.0 1385390.0, 1385390.0 0.04
SWR/J m 1747876.0 0.0   1   0.0 0.0 1747876.0, 1747876.0 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 914710.8 302260.4798 1528978.0004 300443.5996
AXB19b/PgnJ m 1179930.0 302260.4798 1794197.2004 565662.7996
AXB24/PgnJ m 1479600.3 302260.4798 2093867.5004 865333.0996
BALB/cJ m 1384273.4 246794.6483 1885820.4689 882726.3311
BXA16/PgnJ m 1432123.75 302260.4798 2046390.9504 817856.5496
BXD19/TyJ m 1353468.65 302260.4798 1967735.8504 739201.4496
BXD28/TyJ m 1368153.45 302260.4798 1982420.6504 753886.2496
BXH4/TyJ m 1262454.95 302260.4798 1876722.1504 648187.7496
C3H/HeJ m 1457768.05 302260.4798 2072035.2504 843500.8496
C57BL/6J m 1238026.1 191166.3125 1626522.789 849529.411
CXB11/HiAJ m 1397889.0 302260.4798 2012156.2004 783621.7996
CXB12/HiAJ m 1318379.3 302260.4798 1932646.5004 704112.0996
CXB13/HiAJ m 1822121.8333 246794.6483 2323668.9022 1320574.7645
CXB1/ByJ m 1791830.5667 246794.6483 2293377.6355 1290283.4978
CXB2/ByJ m 1587663.9333 246794.6483 2089211.0022 1086116.8645
CXB3/ByJ m 1597402.65 302260.4798 2211669.8504 983135.4496
CXB4/ByJ m 1585723.95 302260.4798 2199991.1504 971456.7496
CXB6/ByJ m 1149249.3333 246794.6483 1650796.4022 647702.2645
CXB7/ByJ m 1300401.75 302260.4798 1914668.9504 686134.5496
CXB8/HiAJ m 2250829.5333 246794.6483 2752376.6022 1749282.4645
CXB9/HiAJ m 1393749.0667 246794.6483 1895296.1355 892201.9978
DBA/2J m 1267625.075 213730.4349 1701977.5778 833272.5722




  GWAS USING LINEAR MIXED MODELS