Project measure / variable:   HMDPpheno9   PGPI

ID, description, units MPD:50431   PGPI   liver 1-palmitoylglycerophosphoinositol (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-palmitoylglycerophosphoinositol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means135377   None
Median of the strain means126744   None
SD of the strain means± 68177
Coefficient of variation (CV)0.504
Min–max range of strain means22165   –   597390   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 679628966856.346 32363284136.0165 1.0456 0.4428
Residuals 34 1052324794108.03 30950729238.4715


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 106479.0 0.0   1   0.0 0.0 106479.0, 106479.0 -0.42
A/J m 85339.0 60126.0   2   42515.0 0.705 42823.0, 127854.0 -0.73
AKR/J m 118134.0 0.0   1   0.0 0.0 118134.0, 118134.0 -0.25
AXB10/PgnJ m 131709.0 0.0   1   0.0 0.0 131709.0, 131709.0 -0.05
AXB12/PgnJ m 126778.0 0.0   1   0.0 0.0 126778.0, 126778.0 -0.13
AXB13/PgnJ m 63544.0 0.0   1   0.0 0.0 63544.0, 63544.0 -1.05
AXB15/PgnJ m 74555.0 0.0   1   0.0 0.0 74555.0, 74555.0 -0.89
AXB19a/PgnJ m 84529.0 0.0   1   0.0 0.0 84529.0, 84529.0 -0.75
AXB19b/PgnJ m 90519.0 20910.0   2   14786.0 0.231 75734.0, 105305.0 -0.66
AXB19/PgnJ m 141695.0 0.0   1   0.0 0.0 141695.0, 141695.0 0.09
AXB1/PgnJ m 22165.0 0.0   1   0.0 0.0 22165.0, 22165.0 -1.66
AXB23/PgnJ m 231525.0 0.0   1   0.0 0.0 231525.0, 231525.0 1.41
AXB24/PgnJ m 116948.0 69258.0   2   48972.0 0.592 67976.0, 165920.0 -0.27
AXB2/PgnJ m 100354.0 0.0   1   0.0 0.0 100354.0, 100354.0 -0.51
AXB4/PgnJ m 91853.0 0.0   1   0.0 0.0 91853.0, 91853.0 -0.64
AXB5/PgnJ m 86369.0 0.0   1   0.0 0.0 86369.0, 86369.0 -0.72
AXB6/PgnJ m 143391.0 0.0   1   0.0 0.0 143391.0, 143391.0 0.12
AXB8/PgnJ m 182101.0 0.0   1   0.0 0.0 182101.0, 182101.0 0.69
BALB/cJ m 110179.0 11705.0   3 6758.0 0.106 99948.0, 122942.0 -0.37
BTBR T+ Itpr3tf/J m 96600.0 0.0   1   0.0 0.0 96600.0, 96600.0 -0.57
BUB/BnJ m 154458.0 0.0   1   0.0 0.0 154458.0, 154458.0 0.28
BXA11/PgnJ m 138940.0 0.0   1   0.0 0.0 138940.0, 138940.0 0.05
BXA12/PgnJ m 93769.0 0.0   1   0.0 0.0 93769.0, 93769.0 -0.61
BXA13/PgnJ m 135405.0 0.0   1   0.0 0.0 135405.0, 135405.0 0.0
BXA14/PgnJ m 332241.0 0.0   1   0.0 0.0 332241.0, 332241.0 2.89
BXA16/PgnJ m 144521.0 22103.0   2   15629.0 0.153 128892.0, 160150.0 0.13
BXA1/PgnJ m 269845.0 0.0   1   0.0 0.0 269845.0, 269845.0 1.97
BXA24/PgnJ m 162971.0 0.0   1   0.0 0.0 162971.0, 162971.0 0.4
BXA25/PgnJ m 98071.0 0.0   1   0.0 0.0 98071.0, 98071.0 -0.55
BXA26/PgnJ m 396146.0 0.0   1   0.0 0.0 396146.0, 396146.0 3.82
BXA2/PgnJ m 133506.0 0.0   1   0.0 0.0 133506.0, 133506.0 -0.03
BXA4/PgnJ m 95938.0 0.0   1   0.0 0.0 95938.0, 95938.0 -0.58
BXA7/PgnJ m 92789.0 0.0   1   0.0 0.0 92789.0, 92789.0 -0.62
BXA8/PgnJ m 168368.0 0.0   1   0.0 0.0 168368.0, 168368.0 0.48
BXD11/TyJ m 80420.0 0.0   1   0.0 0.0 80420.0, 80420.0 -0.81
BXD12/TyJ m 136396.0 0.0   1   0.0 0.0 136396.0, 136396.0 0.01
BXD13/TyJ m 118902.0 0.0   1   0.0 0.0 118902.0, 118902.0 -0.24
BXD14/TyJ m 176614.0 0.0   1   0.0 0.0 176614.0, 176614.0 0.6
BXD15/TyJ m 123006.0 0.0   1   0.0 0.0 123006.0, 123006.0 -0.18
BXD18/TyJ m 140062.0 0.0   1   0.0 0.0 140062.0, 140062.0 0.07
BXD19/TyJ m 126941.0 31896.0   2   22554.0 0.251 104387.0, 149494.0 -0.12
BXD1/TyJ m 130089.0 0.0   1   0.0 0.0 130089.0, 130089.0 -0.08
BXD20/TyJ m 69021.0 0.0   1   0.0 0.0 69021.0, 69021.0 -0.97
BXD21/TyJ m 101670.0 0.0   1   0.0 0.0 101670.0, 101670.0 -0.49
BXD22/TyJ m 94328.0 0.0   1   0.0 0.0 94328.0, 94328.0 -0.6
BXD24/TyJ m 116339.0 0.0   1   0.0 0.0 116339.0, 116339.0 -0.28
BXD24/TyJ-Cep290rd16/J m 105391.0 0.0   1   0.0 0.0 105391.0, 105391.0 -0.44
BXD28/TyJ m 120802.0 39403.0   2   27862.0 0.326 92940.0, 148664.0 -0.21
BXD29-Tlr4lps-2J/J m 90005.0 0.0   1   0.0 0.0 90005.0, 90005.0 -0.67
BXD2/TyJ m 245810.0 0.0   1   0.0 0.0 245810.0, 245810.0 1.62
BXD32/TyJ m 143349.0 0.0   1   0.0 0.0 143349.0, 143349.0 0.12
BXD33/TyJ m 89958.0 0.0   1   0.0 0.0 89958.0, 89958.0 -0.67
BXD34/TyJ m 106036.0 0.0   1   0.0 0.0 106036.0, 106036.0 -0.43
BXD36/TyJ m 117511.0 0.0   1   0.0 0.0 117511.0, 117511.0 -0.26
BXD38/TyJ m 132004.0 0.0   1   0.0 0.0 132004.0, 132004.0 -0.05
BXD39/TyJ m 164972.0 0.0   1   0.0 0.0 164972.0, 164972.0 0.43
BXD40/TyJ m 133054.0 0.0   1   0.0 0.0 133054.0, 133054.0 -0.03
BXD42/TyJ m 114762.0 0.0   1   0.0 0.0 114762.0, 114762.0 -0.3
BXD5/TyJ m 142050.0 0.0   1   0.0 0.0 142050.0, 142050.0 0.1
BXD6/TyJ m 126711.0 0.0   1   0.0 0.0 126711.0, 126711.0 -0.13
BXD8/TyJ m 109988.0 0.0   1   0.0 0.0 109988.0, 109988.0 -0.37
BXD9/TyJ m 195356.0 0.0   1   0.0 0.0 195356.0, 195356.0 0.88
BXH10/TyJ m 91369.0 0.0   1   0.0 0.0 91369.0, 91369.0 -0.65
BXH19/TyJ m 151353.0 0.0   1   0.0 0.0 151353.0, 151353.0 0.23
BXH20/KccJ m 108816.0 0.0   1   0.0 0.0 108816.0, 108816.0 -0.39
BXH22/KccJ m 146839.0 0.0   1   0.0 0.0 146839.0, 146839.0 0.17
BXH2/TyJ m 121159.0 0.0   1   0.0 0.0 121159.0, 121159.0 -0.21
BXH4/TyJ m 114671.0 5220.0   2   3691.0 0.0455 110980.0, 118362.0 -0.3
BXH6/TyJ m 79455.0 0.0   1   0.0 0.0 79455.0, 79455.0 -0.82
BXH7/TyJ m 66649.0 0.0   1   0.0 0.0 66649.0, 66649.0 -1.01
BXH8/TyJ m 151657.0 0.0   1   0.0 0.0 151657.0, 151657.0 0.24
BXH9/TyJ m 139728.0 0.0   1   0.0 0.0 139728.0, 139728.0 0.06
C3H/HeJ m 118306.0 43100.0   2   30476.0 0.364 87830.0, 148782.0 -0.25
C57BL/6J m 122907.0 68673.0   5 30712.0 0.559 30134.0, 215662.0 -0.18
C57L/J m 100957.0 0.0   1   0.0 0.0 100957.0, 100957.0 -0.5
C58/J m 46938.0 0.0   1   0.0 0.0 46938.0, 46938.0 -1.3
CAST/EiJ m 133473.0 0.0   1   0.0 0.0 133473.0, 133473.0 -0.03
CBA/J m 175712.0 0.0   1   0.0 0.0 175712.0, 175712.0 0.59
CE/J m 183209.0 0.0   1   0.0 0.0 183209.0, 183209.0 0.7
CXB11/HiAJ m 171001.0 30807.0   2   21784.0 0.18 149218.0, 192785.0 0.52
CXB12/HiAJ m 115848.0 22912.0   2   16201.0 0.198 99647.0, 132050.0 -0.29
CXB13/HiAJ m 142935.0 52154.0   3 30111.0 0.365 94994.0, 198470.0 0.11
CXB1/ByJ m 159699.0 43326.0   3 25014.0 0.271 123631.0, 207757.0 0.36
CXB2/ByJ m 177271.0 49075.0   3 28334.0 0.277 139161.0, 232646.0 0.61
CXB3/ByJ m 137112.0 22211.0   2   15706.0 0.162 121406.0, 152817.0 0.03
CXB4/ByJ m 151991.0 25648.0   2   18136.0 0.169 133855.0, 170127.0 0.24
CXB6/ByJ m 88779.0 33024.0   3 19066.0 0.372 61877.0, 125634.0 -0.68
CXB7/ByJ m 128180.0 86612.0   2   61244.0 0.676 66936.0, 189424.0 -0.11
CXB8/HiAJ m 597390.0 699785.0   3 404021.0 1.17 153491.0, 1404074.0 6.78
CXB9/HiAJ m 216748.0 77111.0   3 44520.0 0.356 128882.0, 273165.0 1.19
DBA/2J m 87785.0 24400.0   4 12200.0 0.278 65330.0, 122467.0 -0.7
FVB/NJ m 138172.0 0.0   1   0.0 0.0 138172.0, 138172.0 0.04
I/LnJ m 100259.0 0.0   1   0.0 0.0 100259.0, 100259.0 -0.52
KK/HlJ m 125740.0 0.0   1   0.0 0.0 125740.0, 125740.0 -0.14
LG/J m 169512.0 0.0   1   0.0 0.0 169512.0, 169512.0 0.5
LP/J m 113368.0 0.0   1   0.0 0.0 113368.0, 113368.0 -0.32
MA/MyJ m 128998.0 0.0   1   0.0 0.0 128998.0, 128998.0 -0.09
NOD/ShiLtJ m 138686.0 0.0   1   0.0 0.0 138686.0, 138686.0 0.05
NON/ShiLtJ m 158620.0 0.0   1   0.0 0.0 158620.0, 158620.0 0.34
NZW/LacJ m 150360.0 0.0   1   0.0 0.0 150360.0, 150360.0 0.22
PL/J m 123941.0 0.0   1   0.0 0.0 123941.0, 123941.0 -0.17
RIIIS/J m 77437.0 0.0   1   0.0 0.0 77437.0, 77437.0 -0.85
SEA/GnJ m 134639.0 0.0   1   0.0 0.0 134639.0, 134639.0 -0.01
SJL/J m 127921.0 0.0   1   0.0 0.0 127921.0, 127921.0 -0.11
SM/J m 74790.0 0.0   1   0.0 0.0 74790.0, 74790.0 -0.89
SWR/J m 186317.0 0.0   1   0.0 0.0 186317.0, 186317.0 0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 85338.8 124400.0186 338150.0547 0.0
AXB19b/PgnJ m 90519.4 124400.0186 343330.6547 0.0
AXB24/PgnJ m 116948.05 124400.0186 369759.3047 0.0
BALB/cJ m 110178.8333 101572.1898 316598.3584 0.0
BXA16/PgnJ m 144521.25 124400.0186 397332.5047 0.0
BXD19/TyJ m 126940.9 124400.0186 379752.1547 0.0
BXD28/TyJ m 120802.45 124400.0186 373613.7047 0.0
BXH4/TyJ m 114671.2 124400.0186 367482.4547 0.0
C3H/HeJ m 118306.05 124400.0186 371117.3047 0.0
C57BL/6J m 122907.02 78677.4799 282798.8966 0.0
CXB11/HiAJ m 171001.2 124400.0186 423812.4547 0.0
CXB12/HiAJ m 115848.25 124400.0186 368659.5047 0.0
CXB13/HiAJ m 142935.0333 101572.1898 349354.5584 0.0
CXB1/ByJ m 159699.3333 101572.1898 366118.8584 0.0
CXB2/ByJ m 177271.0333 101572.1898 383690.5584 0.0
CXB3/ByJ m 137111.5 124400.0186 389922.7547 0.0
CXB4/ByJ m 151990.85 124400.0186 404802.1047 0.0
CXB6/ByJ m 88778.7333 101572.1898 295198.2584 0.0
CXB7/ByJ m 128179.8 124400.0186 380991.0547 0.0
CXB8/HiAJ m 597390.1333 101572.1898 803809.6584 390970.6083
CXB9/HiAJ m 216747.7333 101572.1898 423167.2584 10328.2083
DBA/2J m 87784.925 87964.0967 266549.4776 0.0




  GWAS USING LINEAR MIXED MODELS