Project measure / variable:   HMDPpheno8   EPA

ID, description, units MPD:50325   EPA   eicosapentaenoate (EPA; 20:5n3) (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - eicosapentaenoate (EPA; 20:5n3) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means8614637   None
Median of the strain means8727984   None
SD of the strain means± 2423551
Coefficient of variation (CV)0.281
Min–max range of strain means2920229   –   16205751   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 138358247897940.0 6588487995140.0 1.4522 0.1625
Residuals 34 154249469630755.0 4536749106786.91


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 5186959.0 0.0   1   0.0 0.0 5186959.0, 5186959.0 -1.41
A/J m 9597236.0 1615219.0   2   1142132.0 0.168 8455104.0, 10739369.0 0.41
AKR/J m 5860176.0 0.0   1   0.0 0.0 5860176.0, 5860176.0 -1.14
AXB10/PgnJ m 10293772.0 0.0   1   0.0 0.0 10293772.0, 10293772.0 0.69
AXB12/PgnJ m 10481905.0 0.0   1   0.0 0.0 10481905.0, 10481905.0 0.77
AXB13/PgnJ m 9312975.0 0.0   1   0.0 0.0 9312975.0, 9312975.0 0.29
AXB15/PgnJ m 11896639.0 0.0   1   0.0 0.0 11896639.0, 11896639.0 1.35
AXB19a/PgnJ m 8501862.0 0.0   1   0.0 0.0 8501862.0, 8501862.0 -0.05
AXB19b/PgnJ m 9063495.0 1795239.0   2   1269426.0 0.198 7794069.0, 10332921.0 0.19
AXB19/PgnJ m 10651916.0 0.0   1   0.0 0.0 10651916.0, 10651916.0 0.84
AXB1/PgnJ m 4955855.0 0.0   1   0.0 0.0 4955855.0, 4955855.0 -1.51
AXB23/PgnJ m 11387862.0 0.0   1   0.0 0.0 11387862.0, 11387862.0 1.14
AXB24/PgnJ m 10068250.0 320143.0   2   226376.0 0.0318 9841875.0, 10294626.0 0.6
AXB2/PgnJ m 8655400.0 0.0   1   0.0 0.0 8655400.0, 8655400.0 0.02
AXB4/PgnJ m 8523975.0 0.0   1   0.0 0.0 8523975.0, 8523975.0 -0.04
AXB5/PgnJ m 9378103.0 0.0   1   0.0 0.0 9378103.0, 9378103.0 0.32
AXB6/PgnJ m 10447319.0 0.0   1   0.0 0.0 10447319.0, 10447319.0 0.76
AXB8/PgnJ m 13259746.0 0.0   1   0.0 0.0 13259746.0, 13259746.0 1.92
BALB/cJ m 7399241.0 859408.0   3 496180.0 0.116 6711838.0, 8362773.0 -0.5
BTBR T+ Itpr3tf/J m 5991700.0 0.0   1   0.0 0.0 5991700.0, 5991700.0 -1.08
BUB/BnJ m 5186838.0 0.0   1   0.0 0.0 5186838.0, 5186838.0 -1.41
BXA11/PgnJ m 11378888.0 0.0   1   0.0 0.0 11378888.0, 11378888.0 1.14
BXA12/PgnJ m 10855576.0 0.0   1   0.0 0.0 10855576.0, 10855576.0 0.92
BXA13/PgnJ m 8734839.0 0.0   1   0.0 0.0 8734839.0, 8734839.0 0.05
BXA14/PgnJ m 3914400.0 0.0   1   0.0 0.0 3914400.0, 3914400.0 -1.94
BXA16/PgnJ m 10420462.0 126292.0   2   89302.0 0.0121 10331160.0, 10509764.0 0.75
BXA1/PgnJ m 14293916.0 0.0   1   0.0 0.0 14293916.0, 14293916.0 2.34
BXA24/PgnJ m 7784918.0 0.0   1   0.0 0.0 7784918.0, 7784918.0 -0.34
BXA25/PgnJ m 10616829.0 0.0   1   0.0 0.0 10616829.0, 10616829.0 0.83
BXA26/PgnJ m 12662929.0 0.0   1   0.0 0.0 12662929.0, 12662929.0 1.67
BXA2/PgnJ m 8725867.0 0.0   1   0.0 0.0 8725867.0, 8725867.0 0.05
BXA4/PgnJ m 4942304.0 0.0   1   0.0 0.0 4942304.0, 4942304.0 -1.52
BXA7/PgnJ m 7608763.0 0.0   1   0.0 0.0 7608763.0, 7608763.0 -0.42
BXA8/PgnJ m 16205751.0 0.0   1   0.0 0.0 16205751.0, 16205751.0 3.13
BXD11/TyJ m 10307065.0 0.0   1   0.0 0.0 10307065.0, 10307065.0 0.7
BXD12/TyJ m 8730102.0 0.0   1   0.0 0.0 8730102.0, 8730102.0 0.05
BXD13/TyJ m 9796649.0 0.0   1   0.0 0.0 9796649.0, 9796649.0 0.49
BXD14/TyJ m 9469700.0 0.0   1   0.0 0.0 9469700.0, 9469700.0 0.35
BXD15/TyJ m 6128393.0 0.0   1   0.0 0.0 6128393.0, 6128393.0 -1.03
BXD18/TyJ m 6315596.0 0.0   1   0.0 0.0 6315596.0, 6315596.0 -0.95
BXD19/TyJ m 9814076.0 2072188.0   2   1465258.0 0.211 8348817.0, 11279334.0 0.49
BXD1/TyJ m 10833348.0 0.0   1   0.0 0.0 10833348.0, 10833348.0 0.92
BXD20/TyJ m 6575610.0 0.0   1   0.0 0.0 6575610.0, 6575610.0 -0.84
BXD21/TyJ m 8192374.0 0.0   1   0.0 0.0 8192374.0, 8192374.0 -0.17
BXD22/TyJ m 6991722.0 0.0   1   0.0 0.0 6991722.0, 6991722.0 -0.67
BXD24/TyJ m 7367877.0 0.0   1   0.0 0.0 7367877.0, 7367877.0 -0.51
BXD24/TyJ-Cep290rd16/J m 6828988.0 0.0   1   0.0 0.0 6828988.0, 6828988.0 -0.74
BXD28/TyJ m 8474315.0 1733348.0   2   1225662.0 0.205 7248653.0, 9699977.0 -0.06
BXD29-Tlr4lps-2J/J m 9447394.0 0.0   1   0.0 0.0 9447394.0, 9447394.0 0.34
BXD2/TyJ m 10007144.0 0.0   1   0.0 0.0 10007144.0, 10007144.0 0.57
BXD32/TyJ m 9326380.0 0.0   1   0.0 0.0 9326380.0, 9326380.0 0.29
BXD33/TyJ m 6689332.0 0.0   1   0.0 0.0 6689332.0, 6689332.0 -0.79
BXD34/TyJ m 6399146.0 0.0   1   0.0 0.0 6399146.0, 6399146.0 -0.91
BXD36/TyJ m 10465564.0 0.0   1   0.0 0.0 10465564.0, 10465564.0 0.76
BXD38/TyJ m 7441708.0 0.0   1   0.0 0.0 7441708.0, 7441708.0 -0.48
BXD39/TyJ m 14370423.0 0.0   1   0.0 0.0 14370423.0, 14370423.0 2.37
BXD40/TyJ m 8119268.0 0.0   1   0.0 0.0 8119268.0, 8119268.0 -0.2
BXD42/TyJ m 8908923.0 0.0   1   0.0 0.0 8908923.0, 8908923.0 0.12
BXD5/TyJ m 9586289.0 0.0   1   0.0 0.0 9586289.0, 9586289.0 0.4
BXD6/TyJ m 7256965.0 0.0   1   0.0 0.0 7256965.0, 7256965.0 -0.56
BXD8/TyJ m 5841563.0 0.0   1   0.0 0.0 5841563.0, 5841563.0 -1.14
BXD9/TyJ m 11300107.0 0.0   1   0.0 0.0 11300107.0, 11300107.0 1.11
BXH10/TyJ m 8261966.0 0.0   1   0.0 0.0 8261966.0, 8261966.0 -0.15
BXH19/TyJ m 5526719.0 0.0   1   0.0 0.0 5526719.0, 5526719.0 -1.27
BXH20/KccJ m 8646429.0 0.0   1   0.0 0.0 8646429.0, 8646429.0 0.01
BXH22/KccJ m 12050315.0 0.0   1   0.0 0.0 12050315.0, 12050315.0 1.42
BXH2/TyJ m 6897114.0 0.0   1   0.0 0.0 6897114.0, 6897114.0 -0.71
BXH4/TyJ m 7609128.0 1765171.0   2   1248164.0 0.232 6360963.0, 8857292.0 -0.41
BXH6/TyJ m 6568344.0 0.0   1   0.0 0.0 6568344.0, 6568344.0 -0.84
BXH7/TyJ m 7331214.0 0.0   1   0.0 0.0 7331214.0, 7331214.0 -0.53
BXH8/TyJ m 8565935.0 0.0   1   0.0 0.0 8565935.0, 8565935.0 -0.02
BXH9/TyJ m 11173659.0 0.0   1   0.0 0.0 11173659.0, 11173659.0 1.06
C3H/HeJ m 9061646.0 2818500.0   2   1992980.0 0.311 7068666.0, 11054626.0 0.18
C57BL/6J m 9090181.0 1937090.0   5 866293.0 0.213 5641656.0, 10163583.0 0.2
C57L/J m 9769401.0 0.0   1   0.0 0.0 9769401.0, 9769401.0 0.48
C58/J m 3452085.0 0.0   1   0.0 0.0 3452085.0, 3452085.0 -2.13
CAST/EiJ m 4253812.0 0.0   1   0.0 0.0 4253812.0, 4253812.0 -1.8
CBA/J m 10883469.0 0.0   1   0.0 0.0 10883469.0, 10883469.0 0.94
CE/J m 10323266.0 0.0   1   0.0 0.0 10323266.0, 10323266.0 0.71
CXB11/HiAJ m 9148714.0 1215911.0   2   859779.0 0.133 8288935.0, 10008493.0 0.22
CXB12/HiAJ m 7831984.0 389199.0   2   275206.0 0.0497 7556778.0, 8107189.0 -0.32
CXB13/HiAJ m 8746474.0 920407.0   3 531397.0 0.105 8035080.0, 9785975.0 0.05
CXB1/ByJ m 10686845.0 2168578.0   3 1252029.0 0.203 8605586.0, 12933294.0 0.86
CXB2/ByJ m 11468962.0 1956014.0   3 1129305.0 0.171 10320038.0, 13727458.0 1.18
CXB3/ByJ m 9262866.0 93847.0   2   66359.0 0.0101 9196506.0, 9329225.0 0.27
CXB4/ByJ m 12506358.0 3057284.0   2   2161826.0 0.244 10344531.0, 14668184.0 1.61
CXB6/ByJ m 6472301.0 2709786.0   3 1564496.0 0.419 4300277.0, 9508871.0 -0.88
CXB7/ByJ m 8881383.0 2116974.0   2   1496927.0 0.238 7384456.0, 10378310.0 0.11
CXB8/HiAJ m 11622240.0 5004552.0   3 2889380.0 0.431 8651166.0, 17400222.0 1.24
CXB9/HiAJ m 10864347.0 2082074.0   3 1202086.0 0.192 8465789.0, 12205838.0 0.93
DBA/2J m 6948986.0 1389062.0   4 694531.0 0.2 5642807.0, 8895516.0 -0.69
FVB/NJ m 2920229.0 0.0   1   0.0 0.0 2920229.0, 2920229.0 -2.35
I/LnJ m 5109928.0 0.0   1   0.0 0.0 5109928.0, 5109928.0 -1.45
KK/HlJ m 8147172.0 0.0   1   0.0 0.0 8147172.0, 8147172.0 -0.19
LG/J m 6804936.0 0.0   1   0.0 0.0 6804936.0, 6804936.0 -0.75
LP/J m 3750414.0 0.0   1   0.0 0.0 3750414.0, 3750414.0 -2.01
MA/MyJ m 6499221.0 0.0   1   0.0 0.0 6499221.0, 6499221.0 -0.87
NOD/ShiLtJ m 10030433.0 0.0   1   0.0 0.0 10030433.0, 10030433.0 0.58
NON/ShiLtJ m 7711624.0 0.0   1   0.0 0.0 7711624.0, 7711624.0 -0.37
NZW/LacJ m 8974898.0 0.0   1   0.0 0.0 8974898.0, 8974898.0 0.15
PL/J m 8087096.0 0.0   1   0.0 0.0 8087096.0, 8087096.0 -0.22
RIIIS/J m 7137753.0 0.0   1   0.0 0.0 7137753.0, 7137753.0 -0.61
SEA/GnJ m 6832190.0 0.0   1   0.0 0.0 6832190.0, 6832190.0 -0.74
SJL/J m 6261256.0 0.0   1   0.0 0.0 6261256.0, 6261256.0 -0.97
SM/J m 6363128.0 0.0   1   0.0 0.0 6363128.0, 6363128.0 -0.93
SWR/J m 9382365.0 0.0   1   0.0 0.0 9382365.0, 9382365.0 0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 9597236.5 1506112.3973 12658025.1499 6536447.8501
AXB19b/PgnJ m 9063495.0 1506112.3973 12124283.6499 6002706.3501
AXB24/PgnJ m 10068250.5 1506112.3973 13129039.1499 7007461.8501
BALB/cJ m 7399240.6667 1229735.6229 9898364.1342 4900117.1991
BXA16/PgnJ m 10420462.0 1506112.3973 13481250.6499 7359673.3501
BXD19/TyJ m 9814075.5 1506112.3973 12874864.1499 6753286.8501
BXD28/TyJ m 8474315.0 1506112.3973 11535103.6499 5413526.3501
BXH4/TyJ m 7609127.5 1506112.3973 10669916.1499 4548338.8501
C3H/HeJ m 9061645.75 1506112.3973 12122434.3999 6000857.1001
C57BL/6J m 9090181.4 952549.1176 11025994.114 7154368.686
CXB11/HiAJ m 9148714.0 1506112.3973 12209502.6499 6087925.3501
CXB12/HiAJ m 7831983.5 1506112.3973 10892772.1499 4771194.8501
CXB13/HiAJ m 8746474.3333 1229735.6229 11245597.8009 6247350.8658
CXB1/ByJ m 10686845.0 1229735.6229 13185968.4676 8187721.5324
CXB2/ByJ m 11468962.0 1229735.6229 13968085.4676 8969838.5324
CXB3/ByJ m 9262865.5 1506112.3973 12323654.1499 6202076.8501
CXB4/ByJ m 12506357.5 1506112.3973 15567146.1499 9445568.8501
CXB6/ByJ m 6472301.0 1229735.6229 8971424.4676 3973177.5324
CXB7/ByJ m 8881383.0 1506112.3973 11942171.6499 5820594.3501
CXB8/HiAJ m 11622240.3333 1229735.6229 14121363.8009 9123116.8658
CXB9/HiAJ m 10864346.6667 1229735.6229 13363470.1342 8365223.1991
DBA/2J m 6948986.0 1064982.2894 9113290.4101 4784681.5899




  GWAS USING LINEAR MIXED MODELS