Project measure / variable:   HMDPpheno6   MeG_carnitine

ID, description, units MPD:50174   MeG_carnitine   liver methylglutaroylcarnitine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver methylglutaroylcarnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1743953   None
Median of the strain means1456796   None
SD of the strain means± 1123638
Coefficient of variation (CV)0.644
Min–max range of strain means75088   –   5202445   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 29610099655013.1 1410004745476.82 3.0453 0.0019
Residuals 34 15742508890273.5 463014967360.986


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2748613.0 0.0   1   0.0 0.0 2748613.0, 2748613.0 0.89
A/J m 495823.0 13924.0   2   9846.0 0.0281 485977.0, 505668.0 -1.11
AKR/J m 4182102.0 0.0   1   0.0 0.0 4182102.0, 4182102.0 2.17
AXB10/PgnJ m 826338.0 0.0   1   0.0 0.0 826338.0, 826338.0 -0.82
AXB12/PgnJ m 1711889.0 0.0   1   0.0 0.0 1711889.0, 1711889.0 -0.03
AXB13/PgnJ m 817941.0 0.0   1   0.0 0.0 817941.0, 817941.0 -0.82
AXB15/PgnJ m 1089642.0 0.0   1   0.0 0.0 1089642.0, 1089642.0 -0.58
AXB19a/PgnJ m 716473.0 0.0   1   0.0 0.0 716473.0, 716473.0 -0.91
AXB19b/PgnJ m 1231595.0 59527.0   2   42092.0 0.0483 1189503.0, 1273686.0 -0.46
AXB19/PgnJ m 1024512.0 0.0   1   0.0 0.0 1024512.0, 1024512.0 -0.64
AXB1/PgnJ m 1562356.0 0.0   1   0.0 0.0 1562356.0, 1562356.0 -0.16
AXB23/PgnJ m 650689.0 0.0   1   0.0 0.0 650689.0, 650689.0 -0.97
AXB24/PgnJ m 1104324.0 353989.0   2   250308.0 0.321 854016.0, 1354632.0 -0.57
AXB2/PgnJ m 2984008.0 0.0   1   0.0 0.0 2984008.0, 2984008.0 1.1
AXB4/PgnJ m 964111.0 0.0   1   0.0 0.0 964111.0, 964111.0 -0.69
AXB5/PgnJ m 2340937.0 0.0   1   0.0 0.0 2340937.0, 2340937.0 0.53
AXB6/PgnJ m 479813.0 0.0   1   0.0 0.0 479813.0, 479813.0 -1.13
AXB8/PgnJ m 1661550.0 0.0   1   0.0 0.0 1661550.0, 1661550.0 -0.07
BALB/cJ m 1322210.0 236880.0   3 136763.0 0.179 1055435.0, 1507896.0 -0.38
BTBR T+ Itpr3tf/J m 1719732.0 0.0   1   0.0 0.0 1719732.0, 1719732.0 -0.02
BUB/BnJ m 5202445.0 0.0   1   0.0 0.0 5202445.0, 5202445.0 3.08
BXA11/PgnJ m 1394736.0 0.0   1   0.0 0.0 1394736.0, 1394736.0 -0.31
BXA12/PgnJ m 1189307.0 0.0   1   0.0 0.0 1189307.0, 1189307.0 -0.49
BXA13/PgnJ m 1691816.0 0.0   1   0.0 0.0 1691816.0, 1691816.0 -0.05
BXA14/PgnJ m 739556.0 0.0   1   0.0 0.0 739556.0, 739556.0 -0.89
BXA16/PgnJ m 954300.0 815113.0   2   576372.0 0.854 377929.0, 1530672.0 -0.7
BXA1/PgnJ m 785818.0 0.0   1   0.0 0.0 785818.0, 785818.0 -0.85
BXA24/PgnJ m 597910.0 0.0   1   0.0 0.0 597910.0, 597910.0 -1.02
BXA25/PgnJ m 4141355.0 0.0   1   0.0 0.0 4141355.0, 4141355.0 2.13
BXA26/PgnJ m 2648422.0 0.0   1   0.0 0.0 2648422.0, 2648422.0 0.8
BXA2/PgnJ m 1768435.0 0.0   1   0.0 0.0 1768435.0, 1768435.0 0.02
BXA4/PgnJ m 1789061.0 0.0   1   0.0 0.0 1789061.0, 1789061.0 0.04
BXA7/PgnJ m 1329940.0 0.0   1   0.0 0.0 1329940.0, 1329940.0 -0.37
BXA8/PgnJ m 612260.0 0.0   1   0.0 0.0 612260.0, 612260.0 -1.01
BXD11/TyJ m 3172116.0 0.0   1   0.0 0.0 3172116.0, 3172116.0 1.27
BXD12/TyJ m 1356368.0 0.0   1   0.0 0.0 1356368.0, 1356368.0 -0.34
BXD13/TyJ m 1891439.0 0.0   1   0.0 0.0 1891439.0, 1891439.0 0.13
BXD14/TyJ m 1074344.0 0.0   1   0.0 0.0 1074344.0, 1074344.0 -0.6
BXD15/TyJ m 1389561.0 0.0   1   0.0 0.0 1389561.0, 1389561.0 -0.32
BXD18/TyJ m 4379864.0 0.0   1   0.0 0.0 4379864.0, 4379864.0 2.35
BXD19/TyJ m 1389372.0 870.0   2   615.0 0.000626 1388757.0, 1389988.0 -0.32
BXD1/TyJ m 3249221.0 0.0   1   0.0 0.0 3249221.0, 3249221.0 1.34
BXD20/TyJ m 1847069.0 0.0   1   0.0 0.0 1847069.0, 1847069.0 0.09
BXD21/TyJ m 2013275.0 0.0   1   0.0 0.0 2013275.0, 2013275.0 0.24
BXD22/TyJ m 1350260.0 0.0   1   0.0 0.0 1350260.0, 1350260.0 -0.35
BXD24/TyJ m 1368151.0 0.0   1   0.0 0.0 1368151.0, 1368151.0 -0.33
BXD24/TyJ-Cep290rd16/J m 1435030.0 0.0   1   0.0 0.0 1435030.0, 1435030.0 -0.27
BXD28/TyJ m 3042716.0 253290.0   2   179103.0 0.0832 2863613.0, 3221819.0 1.16
BXD29-Tlr4lps-2J/J m 2336346.0 0.0   1   0.0 0.0 2336346.0, 2336346.0 0.53
BXD2/TyJ m 589783.0 0.0   1   0.0 0.0 589783.0, 589783.0 -1.03
BXD32/TyJ m 2455668.0 0.0   1   0.0 0.0 2455668.0, 2455668.0 0.63
BXD33/TyJ m 2471252.0 0.0   1   0.0 0.0 2471252.0, 2471252.0 0.65
BXD34/TyJ m 2659167.0 0.0   1   0.0 0.0 2659167.0, 2659167.0 0.81
BXD36/TyJ m 1175782.0 0.0   1   0.0 0.0 1175782.0, 1175782.0 -0.51
BXD38/TyJ m 3654820.0 0.0   1   0.0 0.0 3654820.0, 3654820.0 1.7
BXD39/TyJ m 1569246.0 0.0   1   0.0 0.0 1569246.0, 1569246.0 -0.16
BXD40/TyJ m 2134080.0 0.0   1   0.0 0.0 2134080.0, 2134080.0 0.35
BXD42/TyJ m 1228909.0 0.0   1   0.0 0.0 1228909.0, 1228909.0 -0.46
BXD5/TyJ m 1326400.0 0.0   1   0.0 0.0 1326400.0, 1326400.0 -0.37
BXD6/TyJ m 1400839.0 0.0   1   0.0 0.0 1400839.0, 1400839.0 -0.31
BXD8/TyJ m 2415756.0 0.0   1   0.0 0.0 2415756.0, 2415756.0 0.6
BXD9/TyJ m 389256.0 0.0   1   0.0 0.0 389256.0, 389256.0 -1.21
BXH10/TyJ m 1478561.0 0.0   1   0.0 0.0 1478561.0, 1478561.0 -0.24
BXH19/TyJ m 1375836.0 0.0   1   0.0 0.0 1375836.0, 1375836.0 -0.33
BXH20/KccJ m 1236689.0 0.0   1   0.0 0.0 1236689.0, 1236689.0 -0.45
BXH22/KccJ m 794296.0 0.0   1   0.0 0.0 794296.0, 794296.0 -0.85
BXH2/TyJ m 1659089.0 0.0   1   0.0 0.0 1659089.0, 1659089.0 -0.08
BXH4/TyJ m 696902.0 201975.0   2   142818.0 0.29 554084.0, 839720.0 -0.93
BXH6/TyJ m 1423430.0 0.0   1   0.0 0.0 1423430.0, 1423430.0 -0.29
BXH7/TyJ m 3942259.0 0.0   1   0.0 0.0 3942259.0, 3942259.0 1.96
BXH8/TyJ m 653386.0 0.0   1   0.0 0.0 653386.0, 653386.0 -0.97
BXH9/TyJ m 1706009.0 0.0   1   0.0 0.0 1706009.0, 1706009.0 -0.03
C3H/HeJ m 1721627.0 193103.0   2   136544.0 0.112 1585083.0, 1858172.0 -0.02
C57BL/6J m 2618191.0 1080694.0   5 483301.0 0.413 1756313.0, 4309524.0 0.78
C57L/J m 3456665.0 0.0   1   0.0 0.0 3456665.0, 3456665.0 1.52
C58/J m 355970.0 0.0   1   0.0 0.0 355970.0, 355970.0 -1.24
CAST/EiJ m 137372.0 0.0   1   0.0 0.0 137372.0, 137372.0 -1.43
CBA/J m 2062220.0 0.0   1   0.0 0.0 2062220.0, 2062220.0 0.28
CE/J m 653063.0 0.0   1   0.0 0.0 653063.0, 653063.0 -0.97
CXB11/HiAJ m 1405610.0 340522.0   2   240785.0 0.242 1164825.0, 1646395.0 -0.3
CXB12/HiAJ m 1551029.0 565.0   2   399.0 0.000364 1550630.0, 1551428.0 -0.17
CXB13/HiAJ m 1415716.0 573205.0   3 330940.0 0.405 991372.0, 2067790.0 -0.29
CXB1/ByJ m 1874224.0 1718598.0   3 992233.0 0.917 461531.0, 3787551.0 0.12
CXB2/ByJ m 2659073.0 778067.0   3 449217.0 0.293 1906119.0, 3460030.0 0.81
CXB3/ByJ m 2677844.0 89198.0   2   63073.0 0.0333 2614772.0, 2740917.0 0.83
CXB4/ByJ m 221102.0 40476.0   2   28621.0 0.183 192481.0, 249723.0 -1.36
CXB6/ByJ m 1772862.0 214165.0   3 123648.0 0.121 1583158.0, 2005104.0 0.03
CXB7/ByJ m 835296.0 113838.0   2   80496.0 0.136 754800.0, 915792.0 -0.81
CXB8/HiAJ m 639827.0 202574.0   3 116956.0 0.317 476846.0, 866625.0 -0.98
CXB9/HiAJ m 1840700.0 496573.0   3 286696.0 0.27 1327299.0, 2318532.0 0.09
DBA/2J m 1793661.0 693408.0   4 346704.0 0.387 1029714.0, 2606928.0 0.04
FVB/NJ m 4880188.0 0.0   1   0.0 0.0 4880188.0, 4880188.0 2.79
I/LnJ m 1690733.0 0.0   1   0.0 0.0 1690733.0, 1690733.0 -0.05
KK/HlJ m 81126.0 0.0   1   0.0 0.0 81126.0, 81126.0 -1.48
LG/J m 1026997.0 0.0   1   0.0 0.0 1026997.0, 1026997.0 -0.64
LP/J m 302082.0 0.0   1   0.0 0.0 302082.0, 302082.0 -1.28
MA/MyJ m 4192259.0 0.0   1   0.0 0.0 4192259.0, 4192259.0 2.18
NOD/ShiLtJ m 1321782.0 0.0   1   0.0 0.0 1321782.0, 1321782.0 -0.38
NON/ShiLtJ m 1639839.0 0.0   1   0.0 0.0 1639839.0, 1639839.0 -0.09
NZW/LacJ m 1660343.0 0.0   1   0.0 0.0 1660343.0, 1660343.0 -0.07
PL/J m 75088.0 0.0   1   0.0 0.0 75088.0, 75088.0 -1.49
RIIIS/J m 3866986.0 0.0   1   0.0 0.0 3866986.0, 3866986.0 1.89
SEA/GnJ m 1292110.0 0.0   1   0.0 0.0 1292110.0, 1292110.0 -0.4
SJL/J m 1585619.0 0.0   1   0.0 0.0 1585619.0, 1585619.0 -0.14
SM/J m 5130630.0 0.0   1   0.0 0.0 5130630.0, 5130630.0 3.01
SWR/J m 2208626.0 0.0   1   0.0 0.0 2208626.0, 2208626.0 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 495822.95 481152.2458 1473641.9598 0.0
AXB19b/PgnJ m 1231594.55 481152.2458 2209413.5598 253775.5402
AXB24/PgnJ m 1104324.05 481152.2458 2082143.0598 126505.0402
BALB/cJ m 1322210.2333 392859.1636 2120596.1116 523824.3551
BXA16/PgnJ m 954300.5 481152.2458 1932119.5098 0.0
BXD19/TyJ m 1389372.45 481152.2458 2367191.4598 411553.4402
BXD28/TyJ m 3042716.05 481152.2458 4020535.0598 2064897.0402
BXH4/TyJ m 696902.45 481152.2458 1674721.4598 0.0
C3H/HeJ m 1721627.2 481152.2458 2699446.2098 743808.1902
C57BL/6J m 2618190.74 304307.3996 3236617.7821 1999763.6979
CXB11/HiAJ m 1405610.0 481152.2458 2383429.0098 427790.9902
CXB12/HiAJ m 1551028.95 481152.2458 2528847.9598 573209.9402
CXB13/HiAJ m 1415716.3333 392859.1636 2214102.2116 617330.4551
CXB1/ByJ m 1874223.8333 392859.1636 2672609.7116 1075837.9551
CXB2/ByJ m 2659072.8667 392859.1636 3457458.7449 1860686.9884
CXB3/ByJ m 2677844.25 481152.2458 3655663.2598 1700025.2402
CXB4/ByJ m 221101.9 481152.2458 1198920.9098 0.0
CXB6/ByJ m 1772862.2 392859.1636 2571248.0782 974476.3218
CXB7/ByJ m 835295.8 481152.2458 1813114.8098 0.0
CXB8/HiAJ m 639826.6667 392859.1636 1438212.5449 0.0
CXB9/HiAJ m 1840700.0 392859.1636 2639085.8782 1042314.1218
DBA/2J m 1793661.325 340226.0158 2485083.7776 1102238.8724




  GWAS USING LINEAR MIXED MODELS