Project measure / variable:   HMDPpheno6   MTA

ID, description, units MPD:50150   MTA   liver 5-methylthioadenosine (MTA) (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver 5-methylthioadenosine (MTA) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means56917   None
Median of the strain means47634   None
SD of the strain means± 27490
Coefficient of variation (CV)0.483
Min–max range of strain means23948   –   187188   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 73316638562.4448 3491268502.9736 2.9998 0.0023
Residuals 33 38405906094.6437 1163815336.2013


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 36956.0 0.0   1   0.0 0.0 36956.0, 36956.0 -0.73
A/J m 60260.0 22225.0   2   15716.0 0.369 44545.0, 75976.0 0.12
AKR/J m 101674.0 0.0   1   0.0 0.0 101674.0, 101674.0 1.63
AXB10/PgnJ m 43130.0 0.0   1   0.0 0.0 43130.0, 43130.0 -0.5
AXB12/PgnJ m 38864.0 0.0   1   0.0 0.0 38864.0, 38864.0 -0.66
AXB13/PgnJ m 99232.0 0.0   1   0.0 0.0 99232.0, 99232.0 1.54
AXB15/PgnJ m 131162.0 0.0   1   0.0 0.0 131162.0, 131162.0 2.7
AXB19a/PgnJ m 33440.0 0.0   1   0.0 0.0 33440.0, 33440.0 -0.85
AXB19b/PgnJ m 51589.0 625.0   2   442.0 0.0121 51147.0, 52030.0 -0.19
AXB19/PgnJ m 29600.0 0.0   1   0.0 0.0 29600.0, 29600.0 -0.99
AXB1/PgnJ m 51824.0 0.0   1   0.0 0.0 51824.0, 51824.0 -0.19
AXB23/PgnJ m 57762.0 0.0   1   0.0 0.0 57762.0, 57762.0 0.03
AXB24/PgnJ m 45531.0 419.0   2   297.0 0.00921 45234.0, 45827.0 -0.41
AXB2/PgnJ m 68016.0 0.0   1   0.0 0.0 68016.0, 68016.0 0.4
AXB4/PgnJ m 46254.0 0.0   1   0.0 0.0 46254.0, 46254.0 -0.39
AXB5/PgnJ m 41945.0 0.0   1   0.0 0.0 41945.0, 41945.0 -0.54
AXB6/PgnJ m 55797.0 0.0   1   0.0 0.0 55797.0, 55797.0 -0.04
AXB8/PgnJ m 56320.0 0.0   1   0.0 0.0 56320.0, 56320.0 -0.02
BALB/cJ m 33107.0 9214.0   3 5320.0 0.278 24754.0, 42990.0 -0.87
BTBR T+ Itpr3tf/J m 113315.0 0.0   1   0.0 0.0 113315.0, 113315.0 2.05
BUB/BnJ m 44596.0 0.0   1   0.0 0.0 44596.0, 44596.0 -0.45
BXA11/PgnJ m 72914.0 0.0   1   0.0 0.0 72914.0, 72914.0 0.58
BXA12/PgnJ m 35089.0 0.0   1   0.0 0.0 35089.0, 35089.0 -0.79
BXA13/PgnJ m 23948.0 0.0   1   0.0 0.0 23948.0, 23948.0 -1.2
BXA14/PgnJ m 111835.0 0.0   1   0.0 0.0 111835.0, 111835.0 2.0
BXA16/PgnJ m 47272.0 2146.0   2   1517.0 0.0454 45755.0, 48789.0 -0.35
BXA1/PgnJ m 113306.0 0.0   1   0.0 0.0 113306.0, 113306.0 2.05
BXA24/PgnJ m 59453.0 0.0   1   0.0 0.0 59453.0, 59453.0 0.09
BXA25/PgnJ m 86592.0 0.0   1   0.0 0.0 86592.0, 86592.0 1.08
BXA26/PgnJ m 70378.0 0.0   1   0.0 0.0 70378.0, 70378.0 0.49
BXA2/PgnJ m 62130.0 0.0   1   0.0 0.0 62130.0, 62130.0 0.19
BXA4/PgnJ m 69518.0 0.0   1   0.0 0.0 69518.0, 69518.0 0.46
BXA7/PgnJ m 68869.0 0.0   1   0.0 0.0 68869.0, 68869.0 0.43
BXA8/PgnJ m 47996.0 0.0   1   0.0 0.0 47996.0, 47996.0 -0.32
BXD11/TyJ m 52749.0 0.0   1   0.0 0.0 52749.0, 52749.0 -0.15
BXD12/TyJ m 68009.0 0.0   1   0.0 0.0 68009.0, 68009.0 0.4
BXD13/TyJ m 38288.0 0.0   1   0.0 0.0 38288.0, 38288.0 -0.68
BXD14/TyJ m 24630.0 0.0   1   0.0 0.0 24630.0, 24630.0 -1.17
BXD15/TyJ m 55448.0 0.0   1   0.0 0.0 55448.0, 55448.0 -0.05
BXD18/TyJ m 34852.0 0.0   1   0.0 0.0 34852.0, 34852.0 -0.8
BXD19/TyJ m 30032.0 4729.0   2   3344.0 0.157 26689.0, 33376.0 -0.98
BXD1/TyJ m 35107.0 0.0   1   0.0 0.0 35107.0, 35107.0 -0.79
BXD20/TyJ m 37166.0 0.0   1   0.0 0.0 37166.0, 37166.0 -0.72
BXD21/TyJ m 81112.0 0.0   1   0.0 0.0 81112.0, 81112.0 0.88
BXD22/TyJ m 43656.0 0.0   1   0.0 0.0 43656.0, 43656.0 -0.48
BXD24/TyJ m 41600.0 0.0   1   0.0 0.0 41600.0, 41600.0 -0.56
BXD24/TyJ-Cep290rd16/J m 25863.0 0.0   1   0.0 0.0 25863.0, 25863.0 -1.13
BXD28/TyJ m 51848.0 16482.0   2   11654.0 0.318 40193.0, 63502.0 -0.18
BXD29-Tlr4lps-2J/J m 39012.0 0.0   1   0.0 0.0 39012.0, 39012.0 -0.65
BXD2/TyJ m 55643.0 0.0   1   0.0 0.0 55643.0, 55643.0 -0.05
BXD32/TyJ m 71518.0 0.0   1   0.0 0.0 71518.0, 71518.0 0.53
BXD33/TyJ m 39978.0 0.0   1   0.0 0.0 39978.0, 39978.0 -0.62
BXD34/TyJ m 46699.0 0.0   1   0.0 0.0 46699.0, 46699.0 -0.37
BXD36/TyJ m 45447.0 0.0   1   0.0 0.0 45447.0, 45447.0 -0.42
BXD38/TyJ m 39791.0 0.0   1   0.0 0.0 39791.0, 39791.0 -0.62
BXD39/TyJ m 77468.0 0.0   1   0.0 0.0 77468.0, 77468.0 0.75
BXD40/TyJ m 43641.0 0.0   1   0.0 0.0 43641.0, 43641.0 -0.48
BXD42/TyJ m 37302.0 0.0   1   0.0 0.0 37302.0, 37302.0 -0.71
BXD5/TyJ m 29154.0 0.0   1   0.0 0.0 29154.0, 29154.0 -1.01
BXD6/TyJ m 35012.0 0.0   1   0.0 0.0 35012.0, 35012.0 -0.8
BXD8/TyJ m 31518.0 0.0   1   0.0 0.0 31518.0, 31518.0 -0.92
BXD9/TyJ m 36960.0 0.0   1   0.0 0.0 36960.0, 36960.0 -0.73
BXH10/TyJ m 30870.0 0.0   1   0.0 0.0 30870.0, 30870.0 -0.95
BXH19/TyJ m 67062.0 0.0   1   0.0 0.0 67062.0, 67062.0 0.37
BXH20/KccJ m 46188.0 0.0   1   0.0 0.0 46188.0, 46188.0 -0.39
BXH22/KccJ m 72112.0 0.0   1   0.0 0.0 72112.0, 72112.0 0.55
BXH2/TyJ m 62892.0 0.0   1   0.0 0.0 62892.0, 62892.0 0.22
BXH4/TyJ m 50421.0 7898.0   2   5585.0 0.157 44836.0, 56006.0 -0.24
BXH6/TyJ m 33843.0 0.0   1   0.0 0.0 33843.0, 33843.0 -0.84
BXH7/TyJ m 45995.0 0.0   1   0.0 0.0 45995.0, 45995.0 -0.4
BXH8/TyJ m 29087.0 0.0   1   0.0 0.0 29087.0, 29087.0 -1.01
BXH9/TyJ m 65100.0 0.0   1   0.0 0.0 65100.0, 65100.0 0.3
C3H/HeJ m 56922.0 26933.0   2   19044.0 0.473 37877.0, 75966.0 0.0
C57BL/6J m 40065.0 10349.0   5 4628.0 0.258 27528.0, 51260.0 -0.61
C57L/J m 75465.0 0.0   1   0.0 0.0 75465.0, 75465.0 0.67
C58/J m 46289.0 0.0   1   0.0 0.0 46289.0, 46289.0 -0.39
CAST/EiJ m 44960.0 0.0   1   0.0 0.0 44960.0, 44960.0 -0.43
CBA/J m 39304.0 0.0   1   0.0 0.0 39304.0, 39304.0 -0.64
CE/J m 116993.0 0.0   1   0.0 0.0 116993.0, 116993.0 2.19
CXB11/HiAJ m 49225.0 22572.0   2   15961.0 0.459 33264.0, 65185.0 -0.28
CXB12/HiAJ m 187188.0 74653.0   2   52788.0 0.399 134400.0, 239975.0 4.74
CXB13/HiAJ m 62504.0 21963.0   3 12680.0 0.351 38508.0, 81609.0 0.2
CXB1/ByJ m 51589.0 6774.0   3 3911.0 0.131 43828.0, 56314.0 -0.19
CXB2/ByJ m 96599.0 14398.0   3 8313.0 0.149 87099.0, 113165.0 1.44
CXB3/ByJ m 77886.0 1686.0   2   1192.0 0.0216 76694.0, 79077.0 0.76
CXB4/ByJ m 44612.0 3856.0   2   2727.0 0.0864 41885.0, 47339.0 -0.45
CXB6/ByJ m 45215.0 9098.0   3 5253.0 0.201 39651.0, 55714.0 -0.43
CXB7/ByJ m 147044.0 18074.0   2   12780.0 0.123 134264.0, 159825.0 3.28
CXB8/HiAJ m 56809.0 15948.0   3 9208.0 0.281 45632.0, 75073.0 0.0
CXB9/HiAJ m 126384.0 116547.0   3 67288.0 0.922 55511.0, 260895.0 2.53
DBA/2J m 48627.0 15625.0   3 9021.0 0.321 35689.0, 65986.0 -0.3
FVB/NJ m 40607.0 0.0   1   0.0 0.0 40607.0, 40607.0 -0.59
I/LnJ m 39721.0 0.0   1   0.0 0.0 39721.0, 39721.0 -0.63
KK/HlJ m 42159.0 0.0   1   0.0 0.0 42159.0, 42159.0 -0.54
LG/J m 46929.0 0.0   1   0.0 0.0 46929.0, 46929.0 -0.36
LP/J m 40020.0 0.0   1   0.0 0.0 40020.0, 40020.0 -0.61
MA/MyJ m 65175.0 0.0   1   0.0 0.0 65175.0, 65175.0 0.3
NOD/ShiLtJ m 82069.0 0.0   1   0.0 0.0 82069.0, 82069.0 0.91
NON/ShiLtJ m 30220.0 0.0   1   0.0 0.0 30220.0, 30220.0 -0.97
NZW/LacJ m 58903.0 0.0   1   0.0 0.0 58903.0, 58903.0 0.07
PL/J m 39738.0 0.0   1   0.0 0.0 39738.0, 39738.0 -0.62
RIIIS/J m 73371.0 0.0   1   0.0 0.0 73371.0, 73371.0 0.6
SEA/GnJ m 57936.0 0.0   1   0.0 0.0 57936.0, 57936.0 0.04
SJL/J m 40740.0 0.0   1   0.0 0.0 40740.0, 40740.0 -0.59
SM/J m 45227.0 0.0   1   0.0 0.0 45227.0, 45227.0 -0.43
SWR/J m 53944.0 0.0   1   0.0 0.0 53944.0, 53944.0 -0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60260.45 24122.7624 109338.5792 11182.3208
AXB19b/PgnJ m 51588.7 24122.7624 100666.8292 2510.5708
AXB24/PgnJ m 45530.7 24122.7624 94608.8292 0.0
BALB/cJ m 33107.3667 19696.1531 73179.4914 0.0
BXA16/PgnJ m 47271.95 24122.7624 96350.0792 0.0
BXD19/TyJ m 30032.5 24122.7624 79110.6292 0.0
BXD28/TyJ m 51847.9 24122.7624 100926.0292 2769.7708
BXH4/TyJ m 50421.2 24122.7624 99499.3292 1343.0708
C3H/HeJ m 56921.8 24122.7624 105999.9292 7843.6708
C57BL/6J m 40064.54 15256.5746 71104.2743 9024.8057
CXB11/HiAJ m 49224.6 24122.7624 98302.7292 146.4708
CXB12/HiAJ m 187187.85 24122.7624 236265.9792 138109.7208
CXB13/HiAJ m 62503.5333 19696.1531 102575.658 22431.4086
CXB1/ByJ m 51589.1667 19696.1531 91661.2914 11517.042
CXB2/ByJ m 96599.2333 19696.1531 136671.358 56527.1086
CXB3/ByJ m 77885.5 24122.7624 126963.6292 28807.3708
CXB4/ByJ m 44611.95 24122.7624 93690.0792 0.0
CXB6/ByJ m 45214.7667 19696.1531 85286.8914 5142.642
CXB7/ByJ m 147044.15 24122.7624 196122.2792 97966.0208
CXB8/HiAJ m 56809.3667 19696.1531 96881.4914 16737.242
CXB9/HiAJ m 126383.5 19696.1531 166455.6247 86311.3753
DBA/2J m 48626.5667 19696.1531 88698.6914 8554.442




  GWAS USING LINEAR MIXED MODELS