Project measure / variable:   HMDPpheno6   betaine

ID, description, units MPD:50133   betaine   liver betaine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver betaine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means6273554   None
Median of the strain means5980488   None
SD of the strain means± 2105268
Coefficient of variation (CV)0.336
Min–max range of strain means2997862   –   17293230   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 85872068378324.8 4089146113253.56 2.4095 0.0109
Residuals 34 57702228086915.3 1697124355497.51


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4856914.0 0.0   1   0.0 0.0 4856914.0, 4856914.0 -0.67
A/J m 7515192.0 70516.0   2   49862.0 0.00938 7465330.0, 7565054.0 0.59
AKR/J m 5165291.0 0.0   1   0.0 0.0 5165291.0, 5165291.0 -0.53
AXB10/PgnJ m 4552786.0 0.0   1   0.0 0.0 4552786.0, 4552786.0 -0.82
AXB12/PgnJ m 6769436.0 0.0   1   0.0 0.0 6769436.0, 6769436.0 0.24
AXB13/PgnJ m 4837272.0 0.0   1   0.0 0.0 4837272.0, 4837272.0 -0.68
AXB15/PgnJ m 5848873.0 0.0   1   0.0 0.0 5848873.0, 5848873.0 -0.2
AXB19a/PgnJ m 5890512.0 0.0   1   0.0 0.0 5890512.0, 5890512.0 -0.18
AXB19b/PgnJ m 6479654.0 1491744.0   2   1054822.0 0.23 5424832.0, 7534476.0 0.1
AXB19/PgnJ m 5796328.0 0.0   1   0.0 0.0 5796328.0, 5796328.0 -0.23
AXB1/PgnJ m 9061063.0 0.0   1   0.0 0.0 9061063.0, 9061063.0 1.32
AXB23/PgnJ m 5389182.0 0.0   1   0.0 0.0 5389182.0, 5389182.0 -0.42
AXB24/PgnJ m 5277398.0 1988394.0   2   1406007.0 0.377 3871392.0, 6683406.0 -0.47
AXB2/PgnJ m 7502302.0 0.0   1   0.0 0.0 7502302.0, 7502302.0 0.58
AXB4/PgnJ m 9280231.0 0.0   1   0.0 0.0 9280231.0, 9280231.0 1.43
AXB5/PgnJ m 5780836.0 0.0   1   0.0 0.0 5780836.0, 5780836.0 -0.23
AXB6/PgnJ m 8000733.0 0.0   1   0.0 0.0 8000733.0, 8000733.0 0.82
AXB8/PgnJ m 5190592.0 0.0   1   0.0 0.0 5190592.0, 5190592.0 -0.51
BALB/cJ m 5518056.0 1316942.0   3 760337.0 0.239 4740226.0, 7038594.0 -0.36
BTBR T+ Itpr3tf/J m 4516400.0 0.0   1   0.0 0.0 4516400.0, 4516400.0 -0.83
BUB/BnJ m 6654455.0 0.0   1   0.0 0.0 6654455.0, 6654455.0 0.18
BXA11/PgnJ m 5264650.0 0.0   1   0.0 0.0 5264650.0, 5264650.0 -0.48
BXA12/PgnJ m 6041500.0 0.0   1   0.0 0.0 6041500.0, 6041500.0 -0.11
BXA13/PgnJ m 5683331.0 0.0   1   0.0 0.0 5683331.0, 5683331.0 -0.28
BXA14/PgnJ m 6822436.0 0.0   1   0.0 0.0 6822436.0, 6822436.0 0.26
BXA16/PgnJ m 6071275.0 381666.0   2   269879.0 0.0629 5801396.0, 6341154.0 -0.1
BXA1/PgnJ m 3865425.0 0.0   1   0.0 0.0 3865425.0, 3865425.0 -1.14
BXA24/PgnJ m 4982395.0 0.0   1   0.0 0.0 4982395.0, 4982395.0 -0.61
BXA25/PgnJ m 6510516.0 0.0   1   0.0 0.0 6510516.0, 6510516.0 0.11
BXA26/PgnJ m 5630942.0 0.0   1   0.0 0.0 5630942.0, 5630942.0 -0.31
BXA2/PgnJ m 4824419.0 0.0   1   0.0 0.0 4824419.0, 4824419.0 -0.69
BXA4/PgnJ m 5737625.0 0.0   1   0.0 0.0 5737625.0, 5737625.0 -0.25
BXA7/PgnJ m 6825196.0 0.0   1   0.0 0.0 6825196.0, 6825196.0 0.26
BXA8/PgnJ m 2997862.0 0.0   1   0.0 0.0 2997862.0, 2997862.0 -1.56
BXD11/TyJ m 6532480.0 0.0   1   0.0 0.0 6532480.0, 6532480.0 0.12
BXD12/TyJ m 8562085.0 0.0   1   0.0 0.0 8562085.0, 8562085.0 1.09
BXD13/TyJ m 4009471.0 0.0   1   0.0 0.0 4009471.0, 4009471.0 -1.08
BXD14/TyJ m 3872849.0 0.0   1   0.0 0.0 3872849.0, 3872849.0 -1.14
BXD15/TyJ m 6747197.0 0.0   1   0.0 0.0 6747197.0, 6747197.0 0.22
BXD18/TyJ m 7113246.0 0.0   1   0.0 0.0 7113246.0, 7113246.0 0.4
BXD19/TyJ m 4587121.0 903293.0   2   638725.0 0.197 3948396.0, 5225846.0 -0.8
BXD1/TyJ m 8410346.0 0.0   1   0.0 0.0 8410346.0, 8410346.0 1.01
BXD20/TyJ m 8450953.0 0.0   1   0.0 0.0 8450953.0, 8450953.0 1.03
BXD21/TyJ m 6434547.0 0.0   1   0.0 0.0 6434547.0, 6434547.0 0.08
BXD22/TyJ m 7937110.0 0.0   1   0.0 0.0 7937110.0, 7937110.0 0.79
BXD24/TyJ m 4339699.0 0.0   1   0.0 0.0 4339699.0, 4339699.0 -0.92
BXD24/TyJ-Cep290rd16/J m 5317802.0 0.0   1   0.0 0.0 5317802.0, 5317802.0 -0.45
BXD28/TyJ m 5275366.0 574432.0   2   406185.0 0.109 4869180.0, 5681550.0 -0.47
BXD29-Tlr4lps-2J/J m 5719150.0 0.0   1   0.0 0.0 5719150.0, 5719150.0 -0.26
BXD2/TyJ m 5118626.0 0.0   1   0.0 0.0 5118626.0, 5118626.0 -0.55
BXD32/TyJ m 6634158.0 0.0   1   0.0 0.0 6634158.0, 6634158.0 0.17
BXD33/TyJ m 9068150.0 0.0   1   0.0 0.0 9068150.0, 9068150.0 1.33
BXD34/TyJ m 7323025.0 0.0   1   0.0 0.0 7323025.0, 7323025.0 0.5
BXD36/TyJ m 4543541.0 0.0   1   0.0 0.0 4543541.0, 4543541.0 -0.82
BXD38/TyJ m 5907708.0 0.0   1   0.0 0.0 5907708.0, 5907708.0 -0.17
BXD39/TyJ m 3214014.0 0.0   1   0.0 0.0 3214014.0, 3214014.0 -1.45
BXD40/TyJ m 5085438.0 0.0   1   0.0 0.0 5085438.0, 5085438.0 -0.56
BXD42/TyJ m 5427622.0 0.0   1   0.0 0.0 5427622.0, 5427622.0 -0.4
BXD5/TyJ m 3704222.0 0.0   1   0.0 0.0 3704222.0, 3704222.0 -1.22
BXD6/TyJ m 6982698.0 0.0   1   0.0 0.0 6982698.0, 6982698.0 0.34
BXD8/TyJ m 8156237.0 0.0   1   0.0 0.0 8156237.0, 8156237.0 0.89
BXD9/TyJ m 3401426.0 0.0   1   0.0 0.0 3401426.0, 3401426.0 -1.36
BXH10/TyJ m 4903283.0 0.0   1   0.0 0.0 4903283.0, 4903283.0 -0.65
BXH19/TyJ m 6050333.0 0.0   1   0.0 0.0 6050333.0, 6050333.0 -0.11
BXH20/KccJ m 6248243.0 0.0   1   0.0 0.0 6248243.0, 6248243.0 -0.01
BXH22/KccJ m 6424207.0 0.0   1   0.0 0.0 6424207.0, 6424207.0 0.07
BXH2/TyJ m 7615504.0 0.0   1   0.0 0.0 7615504.0, 7615504.0 0.64
BXH4/TyJ m 5116552.0 1057490.0   2   747758.0 0.207 4368793.0, 5864310.0 -0.55
BXH6/TyJ m 4578968.0 0.0   1   0.0 0.0 4578968.0, 4578968.0 -0.8
BXH7/TyJ m 11427440.0 0.0   1   0.0 0.0 11427440.0, 11427440.0 2.45
BXH8/TyJ m 3410137.0 0.0   1   0.0 0.0 3410137.0, 3410137.0 -1.36
BXH9/TyJ m 4994988.0 0.0   1   0.0 0.0 4994988.0, 4994988.0 -0.61
C3H/HeJ m 6066603.0 1701907.0   2   1203430.0 0.281 4863174.0, 7270033.0 -0.1
C57BL/6J m 6063870.0 553619.0   5 247586.0 0.0913 5646268.0, 7013178.0 -0.1
C57L/J m 5694162.0 0.0   1   0.0 0.0 5694162.0, 5694162.0 -0.28
C58/J m 17293230.0 0.0   1   0.0 0.0 17293230.0, 17293230.0 5.23
CAST/EiJ m 6239799.0 0.0   1   0.0 0.0 6239799.0, 6239799.0 -0.02
CBA/J m 4789556.0 0.0   1   0.0 0.0 4789556.0, 4789556.0 -0.7
CE/J m 6352420.0 0.0   1   0.0 0.0 6352420.0, 6352420.0 0.04
CXB11/HiAJ m 4219940.0 1966454.0   2   1390493.0 0.466 2829448.0, 5610434.0 -0.98
CXB12/HiAJ m 8056222.0 2291208.0   2   1620128.0 0.284 6436094.0, 9676351.0 0.85
CXB13/HiAJ m 7401960.0 1636408.0   3 944781.0 0.221 5923146.0, 9160025.0 0.54
CXB1/ByJ m 6363696.0 1521864.0   3 878649.0 0.239 4921338.0, 7954228.0 0.04
CXB2/ByJ m 8426022.0 1422831.0   3 821472.0 0.169 6827565.0, 9554112.0 1.02
CXB3/ByJ m 3380887.0 60919.0   2   43076.0 0.018 3337811.0, 3423964.0 -1.37
CXB4/ByJ m 4408492.0 23116.0   2   16346.0 0.00524 4392146.0, 4424838.0 -0.89
CXB6/ByJ m 5073089.0 1220215.0   3 704492.0 0.241 3982581.0, 6391014.0 -0.57
CXB7/ByJ m 7006009.0 1500981.0   2   1061354.0 0.214 5944655.0, 8067363.0 0.35
CXB8/HiAJ m 5127077.0 1267807.0   3 731969.0 0.247 4139538.0, 6556747.0 -0.54
CXB9/HiAJ m 4240768.0 627068.0   3 362038.0 0.148 3516944.0, 4619222.0 -0.97
DBA/2J m 5969793.0 1744308.0   4 872154.0 0.292 4117576.0, 7513548.0 -0.14
FVB/NJ m 14194197.0 0.0   1   0.0 0.0 14194197.0, 14194197.0 3.76
I/LnJ m 8262532.0 0.0   1   0.0 0.0 8262532.0, 8262532.0 0.94
KK/HlJ m 4767761.0 0.0   1   0.0 0.0 4767761.0, 4767761.0 -0.72
LG/J m 6774496.0 0.0   1   0.0 0.0 6774496.0, 6774496.0 0.24
LP/J m 8685050.0 0.0   1   0.0 0.0 8685050.0, 8685050.0 1.15
MA/MyJ m 6141399.0 0.0   1   0.0 0.0 6141399.0, 6141399.0 -0.06
NOD/ShiLtJ m 9354646.0 0.0   1   0.0 0.0 9354646.0, 9354646.0 1.46
NON/ShiLtJ m 7006448.0 0.0   1   0.0 0.0 7006448.0, 7006448.0 0.35
NZW/LacJ m 5671584.0 0.0   1   0.0 0.0 5671584.0, 5671584.0 -0.29
PL/J m 5335848.0 0.0   1   0.0 0.0 5335848.0, 5335848.0 -0.45
RIIIS/J m 6545928.0 0.0   1   0.0 0.0 6545928.0, 6545928.0 0.13
SEA/GnJ m 6024812.0 0.0   1   0.0 0.0 6024812.0, 6024812.0 -0.12
SJL/J m 12084753.0 0.0   1   0.0 0.0 12084753.0, 12084753.0 2.76
SM/J m 6195462.0 0.0   1   0.0 0.0 6195462.0, 6195462.0 -0.04
SWR/J m 5991183.0 0.0   1   0.0 0.0 5991183.0, 5991183.0 -0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 7515191.75 921174.3471 9387243.259 5643140.241
AXB19b/PgnJ m 6479654.25 921174.3471 8351705.759 4607602.741
AXB24/PgnJ m 5277398.5 921174.3471 7149450.009 3405346.991
BALB/cJ m 5518055.5 752135.7048 7046579.1564 3989531.8436
BXA16/PgnJ m 6071274.75 921174.3471 7943326.259 4199223.241
BXD19/TyJ m 4587120.65 921174.3471 6459172.159 2715069.141
BXD28/TyJ m 5275365.5 921174.3471 7147417.009 3403313.991
BXH4/TyJ m 5116551.5 921174.3471 6988603.009 3244499.991
C3H/HeJ m 6066603.25 921174.3471 7938654.759 4194551.741
C57BL/6J m 6063870.2 582601.8118 7247859.5331 4879880.8669
CXB11/HiAJ m 4219940.5 921174.3471 6091992.009 2347888.991
CXB12/HiAJ m 8056222.5 921174.3471 9928274.009 6184170.991
CXB13/HiAJ m 7401960.1667 752135.7048 8930483.8231 5873436.5102
CXB1/ByJ m 6363695.8333 752135.7048 7892219.4898 4835172.1769
CXB2/ByJ m 8426021.6667 752135.7048 9954545.3231 6897498.0102
CXB3/ByJ m 3380887.4 921174.3471 5252938.909 1508835.891
CXB4/ByJ m 4408492.0 921174.3471 6280543.509 2536440.491
CXB6/ByJ m 5073088.6667 752135.7048 6601612.3231 3544565.0102
CXB7/ByJ m 7006009.0 921174.3471 8878060.509 5133957.491
CXB8/HiAJ m 5127076.6667 752135.7048 6655600.3231 3598553.0102
CXB9/HiAJ m 4240768.1667 752135.7048 5769291.8231 2712244.5102
DBA/2J m 5969793.45 651368.6275 7293533.7668 4646053.1332




  GWAS USING LINEAR MIXED MODELS