Project measure / variable:   HMDPpheno6   CySSG

ID, description, units MPD:50121   CySSG   liver cysteine-glutathione disulfide (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver cysteine-glutathione disulfide (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2183099   None
Median of the strain means2192140   None
SD of the strain means± 599645
Coefficient of variation (CV)0.275
Min–max range of strain means706098   –   3962704   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 25435514282453.2 1211214965831.1 1.8978 0.0469
Residuals 34 21699164975667.1 638210734578.444


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2219484.0 0.0   1   0.0 0.0 2219484.0, 2219484.0 0.06
A/J m 2416827.0 121703.0   2   86057.0 0.0504 2330770.0, 2502884.0 0.39
AKR/J m 2343430.0 0.0   1   0.0 0.0 2343430.0, 2343430.0 0.27
AXB10/PgnJ m 2431498.0 0.0   1   0.0 0.0 2431498.0, 2431498.0 0.41
AXB12/PgnJ m 2156144.0 0.0   1   0.0 0.0 2156144.0, 2156144.0 -0.04
AXB13/PgnJ m 2937158.0 0.0   1   0.0 0.0 2937158.0, 2937158.0 1.26
AXB15/PgnJ m 2668738.0 0.0   1   0.0 0.0 2668738.0, 2668738.0 0.81
AXB19a/PgnJ m 2821214.0 0.0   1   0.0 0.0 2821214.0, 2821214.0 1.06
AXB19b/PgnJ m 3150666.0 254327.0   2   179836.0 0.0807 2970830.0, 3330502.0 1.61
AXB19/PgnJ m 2193490.0 0.0   1   0.0 0.0 2193490.0, 2193490.0 0.02
AXB1/PgnJ m 1625686.0 0.0   1   0.0 0.0 1625686.0, 1625686.0 -0.93
AXB23/PgnJ m 2411065.0 0.0   1   0.0 0.0 2411065.0, 2411065.0 0.38
AXB24/PgnJ m 1493220.0 730466.0   2   516517.0 0.489 976703.0, 2009737.0 -1.15
AXB2/PgnJ m 2106047.0 0.0   1   0.0 0.0 2106047.0, 2106047.0 -0.13
AXB4/PgnJ m 1790687.0 0.0   1   0.0 0.0 1790687.0, 1790687.0 -0.65
AXB5/PgnJ m 840825.0 0.0   1   0.0 0.0 840825.0, 840825.0 -2.24
AXB6/PgnJ m 2886190.0 0.0   1   0.0 0.0 2886190.0, 2886190.0 1.17
AXB8/PgnJ m 2427473.0 0.0   1   0.0 0.0 2427473.0, 2427473.0 0.41
BALB/cJ m 1543564.0 367076.0   3 211931.0 0.238 1123824.0, 1804504.0 -1.07
BTBR T+ Itpr3tf/J m 1737273.0 0.0   1   0.0 0.0 1737273.0, 1737273.0 -0.74
BUB/BnJ m 2634716.0 0.0   1   0.0 0.0 2634716.0, 2634716.0 0.75
BXA11/PgnJ m 2518437.0 0.0   1   0.0 0.0 2518437.0, 2518437.0 0.56
BXA12/PgnJ m 1843840.0 0.0   1   0.0 0.0 1843840.0, 1843840.0 -0.57
BXA13/PgnJ m 2312776.0 0.0   1   0.0 0.0 2312776.0, 2312776.0 0.22
BXA14/PgnJ m 845943.0 0.0   1   0.0 0.0 845943.0, 845943.0 -2.23
BXA16/PgnJ m 2401341.0 110277.0   2   77977.0 0.0459 2323364.0, 2479318.0 0.36
BXA1/PgnJ m 2526425.0 0.0   1   0.0 0.0 2526425.0, 2526425.0 0.57
BXA24/PgnJ m 2955257.0 0.0   1   0.0 0.0 2955257.0, 2955257.0 1.29
BXA25/PgnJ m 2179552.0 0.0   1   0.0 0.0 2179552.0, 2179552.0 -0.01
BXA26/PgnJ m 2999221.0 0.0   1   0.0 0.0 2999221.0, 2999221.0 1.36
BXA2/PgnJ m 2008253.0 0.0   1   0.0 0.0 2008253.0, 2008253.0 -0.29
BXA4/PgnJ m 2575245.0 0.0   1   0.0 0.0 2575245.0, 2575245.0 0.65
BXA7/PgnJ m 2780835.0 0.0   1   0.0 0.0 2780835.0, 2780835.0 1.0
BXA8/PgnJ m 2223925.0 0.0   1   0.0 0.0 2223925.0, 2223925.0 0.07
BXD11/TyJ m 1821860.0 0.0   1   0.0 0.0 1821860.0, 1821860.0 -0.6
BXD12/TyJ m 2917002.0 0.0   1   0.0 0.0 2917002.0, 2917002.0 1.22
BXD13/TyJ m 1990824.0 0.0   1   0.0 0.0 1990824.0, 1990824.0 -0.32
BXD14/TyJ m 2216204.0 0.0   1   0.0 0.0 2216204.0, 2216204.0 0.06
BXD15/TyJ m 2394357.0 0.0   1   0.0 0.0 2394357.0, 2394357.0 0.35
BXD18/TyJ m 1890053.0 0.0   1   0.0 0.0 1890053.0, 1890053.0 -0.49
BXD19/TyJ m 1886037.0 337131.0   2   238388.0 0.179 1647649.0, 2124424.0 -0.5
BXD1/TyJ m 1466720.0 0.0   1   0.0 0.0 1466720.0, 1466720.0 -1.19
BXD20/TyJ m 706098.0 0.0   1   0.0 0.0 706098.0, 706098.0 -2.46
BXD21/TyJ m 2059104.0 0.0   1   0.0 0.0 2059104.0, 2059104.0 -0.21
BXD22/TyJ m 1585669.0 0.0   1   0.0 0.0 1585669.0, 1585669.0 -1.0
BXD24/TyJ m 2410698.0 0.0   1   0.0 0.0 2410698.0, 2410698.0 0.38
BXD24/TyJ-Cep290rd16/J m 2126108.0 0.0   1   0.0 0.0 2126108.0, 2126108.0 -0.1
BXD28/TyJ m 1812828.0 437019.0   2   309019.0 0.241 1503809.0, 2121847.0 -0.62
BXD29-Tlr4lps-2J/J m 2476972.0 0.0   1   0.0 0.0 2476972.0, 2476972.0 0.49
BXD2/TyJ m 2737121.0 0.0   1   0.0 0.0 2737121.0, 2737121.0 0.92
BXD32/TyJ m 2705940.0 0.0   1   0.0 0.0 2705940.0, 2705940.0 0.87
BXD33/TyJ m 2218019.0 0.0   1   0.0 0.0 2218019.0, 2218019.0 0.06
BXD34/TyJ m 2525390.0 0.0   1   0.0 0.0 2525390.0, 2525390.0 0.57
BXD36/TyJ m 1827434.0 0.0   1   0.0 0.0 1827434.0, 1827434.0 -0.59
BXD38/TyJ m 1960720.0 0.0   1   0.0 0.0 1960720.0, 1960720.0 -0.37
BXD39/TyJ m 2446029.0 0.0   1   0.0 0.0 2446029.0, 2446029.0 0.44
BXD40/TyJ m 1986035.0 0.0   1   0.0 0.0 1986035.0, 1986035.0 -0.33
BXD42/TyJ m 1321857.0 0.0   1   0.0 0.0 1321857.0, 1321857.0 -1.44
BXD5/TyJ m 1715163.0 0.0   1   0.0 0.0 1715163.0, 1715163.0 -0.78
BXD6/TyJ m 1167949.0 0.0   1   0.0 0.0 1167949.0, 1167949.0 -1.69
BXD8/TyJ m 1755072.0 0.0   1   0.0 0.0 1755072.0, 1755072.0 -0.71
BXD9/TyJ m 2216336.0 0.0   1   0.0 0.0 2216336.0, 2216336.0 0.06
BXH10/TyJ m 1852151.0 0.0   1   0.0 0.0 1852151.0, 1852151.0 -0.55
BXH19/TyJ m 1665230.0 0.0   1   0.0 0.0 1665230.0, 1665230.0 -0.86
BXH20/KccJ m 2705007.0 0.0   1   0.0 0.0 2705007.0, 2705007.0 0.87
BXH22/KccJ m 3148861.0 0.0   1   0.0 0.0 3148861.0, 3148861.0 1.61
BXH2/TyJ m 2146986.0 0.0   1   0.0 0.0 2146986.0, 2146986.0 -0.06
BXH4/TyJ m 1856600.0 3286.0   2   2324.0 0.00177 1854276.0, 1858923.0 -0.54
BXH6/TyJ m 1663589.0 0.0   1   0.0 0.0 1663589.0, 1663589.0 -0.87
BXH7/TyJ m 1887514.0 0.0   1   0.0 0.0 1887514.0, 1887514.0 -0.49
BXH8/TyJ m 1215851.0 0.0   1   0.0 0.0 1215851.0, 1215851.0 -1.61
BXH9/TyJ m 2314244.0 0.0   1   0.0 0.0 2314244.0, 2314244.0 0.22
C3H/HeJ m 2090642.0 214332.0   2   151556.0 0.103 1939086.0, 2242198.0 -0.15
C57BL/6J m 2964230.0 1016065.0   5 454398.0 0.343 2191128.0, 4650584.0 1.3
C57L/J m 1485224.0 0.0   1   0.0 0.0 1485224.0, 1485224.0 -1.16
C58/J m 1691527.0 0.0   1   0.0 0.0 1691527.0, 1691527.0 -0.82
CAST/EiJ m 2655521.0 0.0   1   0.0 0.0 2655521.0, 2655521.0 0.79
CBA/J m 1147952.0 0.0   1   0.0 0.0 1147952.0, 1147952.0 -1.73
CE/J m 3050746.0 0.0   1   0.0 0.0 3050746.0, 3050746.0 1.45
CXB11/HiAJ m 2438807.0 95104.0   2   67249.0 0.039 2371558.0, 2506055.0 0.43
CXB12/HiAJ m 3962704.0 844624.0   2   597239.0 0.213 3365464.0, 4559943.0 2.97
CXB13/HiAJ m 2349534.0 181933.0   3 105039.0 0.0774 2154806.0, 2515166.0 0.28
CXB1/ByJ m 2611998.0 567516.0   3 327656.0 0.217 2273186.0, 3267181.0 0.72
CXB2/ByJ m 3660239.0 1684326.0   3 972446.0 0.46 2508332.0, 5593318.0 2.46
CXB3/ByJ m 3057619.0 483776.0   2   342081.0 0.158 2715538.0, 3399700.0 1.46
CXB4/ByJ m 2178167.0 185055.0   2   130854.0 0.085 2047313.0, 2309021.0 -0.01
CXB6/ByJ m 2470834.0 644312.0   3 371994.0 0.261 2068628.0, 3213981.0 0.48
CXB7/ByJ m 2291070.0 290100.0   2   205132.0 0.127 2085939.0, 2496202.0 0.18
CXB8/HiAJ m 2568098.0 533672.0   3 308116.0 0.208 2219351.0, 3182457.0 0.64
CXB9/HiAJ m 3868843.0 1922482.0   3 1109946.0 0.497 2617613.0, 6082462.0 2.81
DBA/2J m 2014051.0 156410.0   4 78205.0 0.0777 1898151.0, 2244898.0 -0.28
FVB/NJ m 1522155.0 0.0   1   0.0 0.0 1522155.0, 1522155.0 -1.1
I/LnJ m 2052505.0 0.0   1   0.0 0.0 2052505.0, 2052505.0 -0.22
KK/HlJ m 2190791.0 0.0   1   0.0 0.0 2190791.0, 2190791.0 0.01
LG/J m 2094093.0 0.0   1   0.0 0.0 2094093.0, 2094093.0 -0.15
LP/J m 2044586.0 0.0   1   0.0 0.0 2044586.0, 2044586.0 -0.23
MA/MyJ m 2217669.0 0.0   1   0.0 0.0 2217669.0, 2217669.0 0.06
NOD/ShiLtJ m 2538733.0 0.0   1   0.0 0.0 2538733.0, 2538733.0 0.59
NON/ShiLtJ m 2009239.0 0.0   1   0.0 0.0 2009239.0, 2009239.0 -0.29
NZW/LacJ m 1912536.0 0.0   1   0.0 0.0 1912536.0, 1912536.0 -0.45
PL/J m 2312979.0 0.0   1   0.0 0.0 2312979.0, 2312979.0 0.22
RIIIS/J m 1227430.0 0.0   1   0.0 0.0 1227430.0, 1227430.0 -1.59
SEA/GnJ m 2090370.0 0.0   1   0.0 0.0 2090370.0, 2090370.0 -0.15
SJL/J m 720313.0 0.0   1   0.0 0.0 720313.0, 720313.0 -2.44
SM/J m 1789557.0 0.0   1   0.0 0.0 1789557.0, 1789557.0 -0.66
SWR/J m 2321687.0 0.0   1   0.0 0.0 2321687.0, 2321687.0 0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2416827.15 564894.1204 3564830.1246 1268824.1754
AXB19b/PgnJ m 3150666.25 564894.1204 4298669.2246 2002663.2754
AXB24/PgnJ m 1493220.15 564894.1204 2641223.1246 345217.1754
BALB/cJ m 1543564.4667 461234.1179 2480904.9703 606223.963
BXA16/PgnJ m 2401341.0 564894.1204 3549343.9746 1253338.0254
BXD19/TyJ m 1886036.75 564894.1204 3034039.7246 738033.7754
BXD28/TyJ m 1812827.9 564894.1204 2960830.8746 664824.9254
BXH4/TyJ m 1856599.65 564894.1204 3004602.6246 708596.6754
C3H/HeJ m 2090642.4 564894.1204 3238645.3746 942639.4254
C57BL/6J m 2964230.16 357270.4115 3690290.9921 2238169.3279
CXB11/HiAJ m 2438806.65 564894.1204 3586809.6246 1290803.6754
CXB12/HiAJ m 3962703.75 564894.1204 5110706.7246 2814700.7754
CXB13/HiAJ m 2349534.3667 461234.1179 3286874.8703 1412193.863
CXB1/ByJ m 2611997.6 461234.1179 3549338.1036 1674657.0964
CXB2/ByJ m 3660239.4333 461234.1179 4597579.937 2722898.9297
CXB3/ByJ m 3057619.4 564894.1204 4205622.3746 1909616.4254
CXB4/ByJ m 2178167.1 564894.1204 3326170.0746 1030164.1254
CXB6/ByJ m 2470834.3667 461234.1179 3408174.8703 1533493.863
CXB7/ByJ m 2291070.4 564894.1204 3439073.3746 1143067.4254
CXB8/HiAJ m 2568097.5333 461234.1179 3505438.037 1630757.0297
CXB9/HiAJ m 3868843.2667 461234.1179 4806183.7703 2931502.763
DBA/2J m 2014050.65 399440.4632 2825811.3381 1202289.9619




  GWAS USING LINEAR MIXED MODELS