Project measure / variable:   HMDPpheno6   Asp

ID, description, units MPD:50103   Asp   liver aspartate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver aspartate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means12374420   None
Median of the strain means12388700   None
SD of the strain means± 3518713
Coefficient of variation (CV)0.284
Min–max range of strain means5255836   –   26200328   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 501921232393064.0 23901011066336.4 9.2011 < 0.0001
Residuals 34 88319279968400.0 2597625881423.53


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 10663462.0 0.0   1   0.0 0.0 10663462.0, 10663462.0 -0.49
A/J m 10928230.0 1888527.0   2   1335390.0 0.173 9592840.0, 12263620.0 -0.41
AKR/J m 13506593.0 0.0   1   0.0 0.0 13506593.0, 13506593.0 0.32
AXB10/PgnJ m 11227786.0 0.0   1   0.0 0.0 11227786.0, 11227786.0 -0.33
AXB12/PgnJ m 15106733.0 0.0   1   0.0 0.0 15106733.0, 15106733.0 0.78
AXB13/PgnJ m 12388123.0 0.0   1   0.0 0.0 12388123.0, 12388123.0 0.0
AXB15/PgnJ m 12394067.0 0.0   1   0.0 0.0 12394067.0, 12394067.0 0.01
AXB19a/PgnJ m 12269473.0 0.0   1   0.0 0.0 12269473.0, 12269473.0 -0.03
AXB19b/PgnJ m 19395183.0 206533.0   2   146041.0 0.0106 19249142.0, 19541224.0 2.0
AXB19/PgnJ m 15702683.0 0.0   1   0.0 0.0 15702683.0, 15702683.0 0.95
AXB1/PgnJ m 22117966.0 0.0   1   0.0 0.0 22117966.0, 22117966.0 2.77
AXB23/PgnJ m 12034614.0 0.0   1   0.0 0.0 12034614.0, 12034614.0 -0.1
AXB24/PgnJ m 8147925.0 223086.0   2   157746.0 0.0274 7990180.0, 8305670.0 -1.2
AXB2/PgnJ m 14890187.0 0.0   1   0.0 0.0 14890187.0, 14890187.0 0.71
AXB4/PgnJ m 17349368.0 0.0   1   0.0 0.0 17349368.0, 17349368.0 1.41
AXB5/PgnJ m 7592661.0 0.0   1   0.0 0.0 7592661.0, 7592661.0 -1.36
AXB6/PgnJ m 13476560.0 0.0   1   0.0 0.0 13476560.0, 13476560.0 0.31
AXB8/PgnJ m 9237337.0 0.0   1   0.0 0.0 9237337.0, 9237337.0 -0.89
BALB/cJ m 15924752.0 2190798.0   3 1264858.0 0.138 13449730.0, 17615360.0 1.01
BTBR T+ Itpr3tf/J m 7880268.0 0.0   1   0.0 0.0 7880268.0, 7880268.0 -1.28
BUB/BnJ m 18233364.0 0.0   1   0.0 0.0 18233364.0, 18233364.0 1.67
BXA11/PgnJ m 10300347.0 0.0   1   0.0 0.0 10300347.0, 10300347.0 -0.59
BXA12/PgnJ m 7363001.0 0.0   1   0.0 0.0 7363001.0, 7363001.0 -1.42
BXA13/PgnJ m 13847924.0 0.0   1   0.0 0.0 13847924.0, 13847924.0 0.42
BXA14/PgnJ m 14264742.0 0.0   1   0.0 0.0 14264742.0, 14264742.0 0.54
BXA16/PgnJ m 9800306.0 3064128.0   2   2166666.0 0.313 7633640.0, 11966972.0 -0.73
BXA1/PgnJ m 12365790.0 0.0   1   0.0 0.0 12365790.0, 12365790.0 0.0
BXA24/PgnJ m 12866298.0 0.0   1   0.0 0.0 12866298.0, 12866298.0 0.14
BXA25/PgnJ m 9442238.0 0.0   1   0.0 0.0 9442238.0, 9442238.0 -0.83
BXA26/PgnJ m 12389276.0 0.0   1   0.0 0.0 12389276.0, 12389276.0 0.0
BXA2/PgnJ m 14705393.0 0.0   1   0.0 0.0 14705393.0, 14705393.0 0.66
BXA4/PgnJ m 9251174.0 0.0   1   0.0 0.0 9251174.0, 9251174.0 -0.89
BXA7/PgnJ m 14894791.0 0.0   1   0.0 0.0 14894791.0, 14894791.0 0.72
BXA8/PgnJ m 7088179.0 0.0   1   0.0 0.0 7088179.0, 7088179.0 -1.5
BXD11/TyJ m 12416399.0 0.0   1   0.0 0.0 12416399.0, 12416399.0 0.01
BXD12/TyJ m 14763772.0 0.0   1   0.0 0.0 14763772.0, 14763772.0 0.68
BXD13/TyJ m 15132008.0 0.0   1   0.0 0.0 15132008.0, 15132008.0 0.78
BXD14/TyJ m 14863338.0 0.0   1   0.0 0.0 14863338.0, 14863338.0 0.71
BXD15/TyJ m 11966019.0 0.0   1   0.0 0.0 11966019.0, 11966019.0 -0.12
BXD18/TyJ m 12062224.0 0.0   1   0.0 0.0 12062224.0, 12062224.0 -0.09
BXD19/TyJ m 9571034.0 562477.0   2   397732.0 0.0588 9173303.0, 9968766.0 -0.8
BXD1/TyJ m 6932080.0 0.0   1   0.0 0.0 6932080.0, 6932080.0 -1.55
BXD20/TyJ m 11444378.0 0.0   1   0.0 0.0 11444378.0, 11444378.0 -0.26
BXD21/TyJ m 5255836.0 0.0   1   0.0 0.0 5255836.0, 5255836.0 -2.02
BXD22/TyJ m 13656952.0 0.0   1   0.0 0.0 13656952.0, 13656952.0 0.36
BXD24/TyJ m 8299339.0 0.0   1   0.0 0.0 8299339.0, 8299339.0 -1.16
BXD24/TyJ-Cep290rd16/J m 7493231.0 0.0   1   0.0 0.0 7493231.0, 7493231.0 -1.39
BXD28/TyJ m 14446642.0 2850168.0   2   2015373.0 0.197 12431269.0, 16462015.0 0.59
BXD29-Tlr4lps-2J/J m 11875222.0 0.0   1   0.0 0.0 11875222.0, 11875222.0 -0.14
BXD2/TyJ m 18340758.0 0.0   1   0.0 0.0 18340758.0, 18340758.0 1.7
BXD32/TyJ m 16637835.0 0.0   1   0.0 0.0 16637835.0, 16637835.0 1.21
BXD33/TyJ m 16945612.0 0.0   1   0.0 0.0 16945612.0, 16945612.0 1.3
BXD34/TyJ m 11410058.0 0.0   1   0.0 0.0 11410058.0, 11410058.0 -0.27
BXD36/TyJ m 12392914.0 0.0   1   0.0 0.0 12392914.0, 12392914.0 0.01
BXD38/TyJ m 8356820.0 0.0   1   0.0 0.0 8356820.0, 8356820.0 -1.14
BXD39/TyJ m 7148820.0 0.0   1   0.0 0.0 7148820.0, 7148820.0 -1.49
BXD40/TyJ m 15220913.0 0.0   1   0.0 0.0 15220913.0, 15220913.0 0.81
BXD42/TyJ m 5419799.0 0.0   1   0.0 0.0 5419799.0, 5419799.0 -1.98
BXD5/TyJ m 10953493.0 0.0   1   0.0 0.0 10953493.0, 10953493.0 -0.4
BXD6/TyJ m 10755896.0 0.0   1   0.0 0.0 10755896.0, 10755896.0 -0.46
BXD8/TyJ m 7487742.0 0.0   1   0.0 0.0 7487742.0, 7487742.0 -1.39
BXD9/TyJ m 6427836.0 0.0   1   0.0 0.0 6427836.0, 6427836.0 -1.69
BXH10/TyJ m 8530973.0 0.0   1   0.0 0.0 8530973.0, 8530973.0 -1.09
BXH19/TyJ m 8888271.0 0.0   1   0.0 0.0 8888271.0, 8888271.0 -0.99
BXH20/KccJ m 14756810.0 0.0   1   0.0 0.0 14756810.0, 14756810.0 0.68
BXH22/KccJ m 14624764.0 0.0   1   0.0 0.0 14624764.0, 14624764.0 0.64
BXH2/TyJ m 12614942.0 0.0   1   0.0 0.0 12614942.0, 12614942.0 0.07
BXH4/TyJ m 11384248.0 1686517.0   2   1192547.0 0.148 10191700.0, 12576795.0 -0.28
BXH6/TyJ m 16516788.0 0.0   1   0.0 0.0 16516788.0, 16516788.0 1.18
BXH7/TyJ m 14822731.0 0.0   1   0.0 0.0 14822731.0, 14822731.0 0.7
BXH8/TyJ m 13353353.0 0.0   1   0.0 0.0 13353353.0, 13353353.0 0.28
BXH9/TyJ m 11302841.0 0.0   1   0.0 0.0 11302841.0, 11302841.0 -0.3
C3H/HeJ m 12512918.0 610154.0   2   431444.0 0.0488 12081474.0, 12944362.0 0.04
C57BL/6J m 16800062.0 1753573.0   5 784222.0 0.104 15386625.0, 19627008.0 1.26
C57L/J m 10996371.0 0.0   1   0.0 0.0 10996371.0, 10996371.0 -0.39
C58/J m 26200328.0 0.0   1   0.0 0.0 26200328.0, 26200328.0 3.93
CAST/EiJ m 10505860.0 0.0   1   0.0 0.0 10505860.0, 10505860.0 -0.53
CBA/J m 11032627.0 0.0   1   0.0 0.0 11032627.0, 11032627.0 -0.38
CE/J m 12695909.0 0.0   1   0.0 0.0 12695909.0, 12695909.0 0.09
CXB11/HiAJ m 9390999.0 1459371.0   2   1031931.0 0.155 8359068.0, 10422930.0 -0.85
CXB12/HiAJ m 13231009.0 1015821.0   2   718294.0 0.0768 12512715.0, 13949303.0 0.24
CXB13/HiAJ m 14695567.0 2189761.0   3 1264259.0 0.149 12597169.0, 16966486.0 0.66
CXB1/ByJ m 11055623.0 1094601.0   3 631968.0 0.099 10123067.0, 12260755.0 -0.37
CXB2/ByJ m 13730340.0 1318953.0   3 761498.0 0.0961 12207409.0, 14503989.0 0.39
CXB3/ByJ m 12521623.0 524190.0   2   370658.0 0.0419 12150965.0, 12892281.0 0.04
CXB4/ByJ m 10247928.0 15585.0   2   11020.0 0.00152 10236908.0, 10258949.0 -0.6
CXB6/ByJ m 13095453.0 1256427.0   3 725399.0 0.0959 11830566.0, 14343246.0 0.2
CXB7/ByJ m 12310306.0 2617247.0   2   1850673.0 0.213 10459633.0, 14160979.0 -0.02
CXB8/HiAJ m 14070624.0 1084687.0   3 626244.0 0.0771 12847530.0, 14915788.0 0.48
CXB9/HiAJ m 11375709.0 1925071.0   3 1111440.0 0.169 9973612.0, 13570575.0 -0.28
DBA/2J m 6877339.0 1006855.0   4 503427.0 0.146 5873772.0, 7783767.0 -1.56
FVB/NJ m 13072499.0 0.0   1   0.0 0.0 13072499.0, 13072499.0 0.2
I/LnJ m 17400522.0 0.0   1   0.0 0.0 17400522.0, 17400522.0 1.43
KK/HlJ m 13565696.0 0.0   1   0.0 0.0 13565696.0, 13565696.0 0.34
LG/J m 8743867.0 0.0   1   0.0 0.0 8743867.0, 8743867.0 -1.03
LP/J m 11373842.0 0.0   1   0.0 0.0 11373842.0, 11373842.0 -0.28
MA/MyJ m 19622412.0 0.0   1   0.0 0.0 19622412.0, 19622412.0 2.06
NOD/ShiLtJ m 15607820.0 0.0   1   0.0 0.0 15607820.0, 15607820.0 0.92
NON/ShiLtJ m 10978938.0 0.0   1   0.0 0.0 10978938.0, 10978938.0 -0.4
NZW/LacJ m 7864340.0 0.0   1   0.0 0.0 7864340.0, 7864340.0 -1.28
PL/J m 15054289.0 0.0   1   0.0 0.0 15054289.0, 15054289.0 0.76
RIIIS/J m 10231116.0 0.0   1   0.0 0.0 10231116.0, 10231116.0 -0.61
SEA/GnJ m 12518568.0 0.0   1   0.0 0.0 12518568.0, 12518568.0 0.04
SJL/J m 11054095.0 0.0   1   0.0 0.0 11054095.0, 11054095.0 -0.38
SM/J m 13541898.0 0.0   1   0.0 0.0 13541898.0, 13541898.0 0.33
SWR/J m 14192511.0 0.0   1   0.0 0.0 14192511.0, 14192511.0 0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 10928230.0 1139654.7463 13244287.1006 8612172.8994
AXB19b/PgnJ m 19395183.0 1139654.7463 21711240.1006 17079125.8994
AXB24/PgnJ m 8147925.0 1139654.7463 10463982.1006 5831867.8994
BALB/cJ m 15924752.0 930524.2038 17815804.7039 14033699.2961
BXA16/PgnJ m 9800306.25 1139654.7463 12116363.3506 7484249.1494
BXD19/TyJ m 9571034.5 1139654.7463 11887091.6006 7254977.3994
BXD28/TyJ m 14446642.0 1139654.7463 16762699.1006 12130584.8994
BXH4/TyJ m 11384247.5 1139654.7463 13700304.6006 9068190.3994
C3H/HeJ m 12512918.0 1139654.7463 14828975.1006 10196860.8994
C57BL/6J m 16800062.2 720780.9489 18264865.3258 15335259.0742
CXB11/HiAJ m 9390998.75 1139654.7463 11707055.8506 7074941.6494
CXB12/HiAJ m 13231009.0 1139654.7463 15547066.1006 10914951.8994
CXB13/HiAJ m 14695567.3333 930524.2038 16586620.0372 12804514.6294
CXB1/ByJ m 11055623.3333 930524.2038 12946676.0372 9164570.6294
CXB2/ByJ m 13730340.0 930524.2038 15621392.7039 11839287.2961
CXB3/ByJ m 12521623.0 1139654.7463 14837680.1006 10205565.8994
CXB4/ByJ m 10247928.5 1139654.7463 12563985.6006 7931871.3994
CXB6/ByJ m 13095453.3333 930524.2038 14986506.0372 11204400.6294
CXB7/ByJ m 12310306.0 1139654.7463 14626363.1006 9994248.8994
CXB8/HiAJ m 14070623.6667 930524.2038 15961676.3706 12179570.9628
CXB9/HiAJ m 11375709.3333 930524.2038 13266762.0372 9484656.6294
DBA/2J m 6877339.125 805857.5993 8515038.8065 5239639.4435




  GWAS USING LINEAR MIXED MODELS