Project measure / variable:   Rice1   S100a3

ID, description, units MPD:49244   S100a3   S100A3, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - S100A3, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means21.6   None 21.1   None
Median of the strain means22.5   None 20.0   None
SD of the strain means± 4.00 ± 5.13
Coefficient of variation (CV)0.185 0.243
Min–max range of strain means16.5   –   27.5   None 16.0   –   32.5   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.2727 2.2727 0.2024 0.6572
strain 10 663.6818 66.3682 5.9113 0.0003
sex:strain 10 183.2273 18.3227 1.632 0.1623
Residuals 22 247.0 11.2273


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 23.5 4.95   2   3.5 0.211 20.0, 27.0 0.48
C3H/HeJ m 16.5 2.12   2   1.5 0.129 15.0, 18.0 -0.9
C57BL/6J f 17.5 0.707   2   0.5 0.0404 17.0, 18.0 -1.02
C57BL/6J m 17.5 0.707   2   0.5 0.0404 17.0, 18.0 -0.71
CAST/EiJ f 16.5 2.12   2   1.5 0.129 15.0, 18.0 -1.27
CAST/EiJ m 16.0 7.07   2   5.0 0.442 11.0, 21.0 -1.0
DBA/1J f 22.5 0.707   2   0.5 0.0314 22.0, 23.0 0.23
DBA/1J m 20.5 4.95   2   3.5 0.241 17.0, 24.0 -0.12
MRL/MpJ f 24.5 3.54   2   2.5 0.144 22.0, 27.0 0.73
MRL/MpJ m 19.0 2.83   2   2.0 0.149 17.0, 21.0 -0.42
MRL/MpJ Faslpr-Foxq1sa-J/J f 27.5 0.707   2   0.5 0.0257 27.0, 28.0 1.48
MRL/MpJ Faslpr-Foxq1sa-J/J m 27.0 2.83   2   2.0 0.105 25.0, 29.0 1.14
NOD/ShiLtJ f 27.0 4.24   2   3.0 0.157 24.0, 30.0 1.35
NOD/ShiLtJ m 25.5 0.707   2   0.5 0.0277 25.0, 26.0 0.85
NZW/LacJ f 23.0 1.41   2   1.0 0.0615 22.0, 24.0 0.35
NZW/LacJ m 32.5 4.95   2   3.5 0.152 29.0, 36.0 2.21
SB/LeJ f 17.0 5.66   2   4.0 0.333 13.0, 21.0 -1.15
SB/LeJ m 20.0 2.83   2   2.0 0.141 18.0, 22.0 -0.22
STOCK a/a Tmem79ma Flgft/J f 17.5 0.707   2   0.5 0.0404 17.0, 18.0 -1.02
STOCK a/a Tmem79ma Flgft/J m 17.5 0.707   2   0.5 0.0404 17.0, 18.0 -0.71
WSB/EiJ f 21.0 4.24   2   3.0 0.202 18.0, 24.0 -0.15
WSB/EiJ m 20.5 2.12   2   1.5 0.103 19.0, 22.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 23.5 2.3693 28.4137 18.5863
C3H/HeJ m 16.5 2.3693 21.4137 11.5863
C57BL/6J f 17.5 2.3693 22.4137 12.5863
C57BL/6J m 17.5 2.3693 22.4137 12.5863
CAST/EiJ f 16.5 2.3693 21.4137 11.5863
CAST/EiJ m 16.0 2.3693 20.9137 11.0863
DBA/1J f 22.5 2.3693 27.4137 17.5863
DBA/1J m 20.5 2.3693 25.4137 15.5863
MRL/MpJ f 24.5 2.3693 29.4137 19.5863
MRL/MpJ m 19.0 2.3693 23.9137 14.0863
MRL/MpJ Faslpr-Foxq1sa-J/J f 27.5 2.3693 32.4137 22.5863
MRL/MpJ Faslpr-Foxq1sa-J/J m 27.0 2.3693 31.9137 22.0863
NOD/ShiLtJ f 27.0 2.3693 31.9137 22.0863
NOD/ShiLtJ m 25.5 2.3693 30.4137 20.5863
NZW/LacJ f 23.0 2.3693 27.9137 18.0863
NZW/LacJ m 32.5 2.3693 37.4137 27.5863
SB/LeJ f 17.0 2.3693 21.9137 12.0863
SB/LeJ m 20.0 2.3693 24.9137 15.0863
STOCK a/a Tmem79ma Flgft/J f 17.5 2.3693 22.4137 12.5863
STOCK a/a Tmem79ma Flgft/J m 17.5 2.3693 22.4137 12.5863
WSB/EiJ f 21.0 2.3693 25.9137 16.0863
WSB/EiJ m 20.5 2.3693 25.4137 15.5863


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 20.0 1.6754 23.4745 16.5255
C57BL/6J both 17.5 1.6754 20.9745 14.0255
CAST/EiJ both 16.25 1.6754 19.7245 12.7755
DBA/1J both 21.5 1.6754 24.9745 18.0255
MRL/MpJ both 21.75 1.6754 25.2245 18.2755
MRL/MpJ Faslpr-Foxq1sa-J/J both 27.25 1.6754 30.7245 23.7755
NOD/ShiLtJ both 26.25 1.6754 29.7245 22.7755
NZW/LacJ both 27.75 1.6754 31.2245 24.2755
SB/LeJ both 18.5 1.6754 21.9745 15.0255
STOCK a/a Tmem79ma Flgft/J both 17.5 1.6754 20.9745 14.0255
WSB/EiJ both 20.75 1.6754 24.2245 17.2755




  GWAS USING LINEAR MIXED MODELS