Project measure / variable:   Rice1   Krtap19_5

ID, description, units MPD:49239   Krtap19_5   KRTAP19-5), spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP19-5), spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means23.2   None 26.0   None
Median of the strain means23.0   None 28.0   None
SD of the strain means± 8.46 ± 7.09
Coefficient of variation (CV)0.364 0.273
Min–max range of strain means8.00   –   35.0   None 12.0   –   34.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 84.5682 84.5682 4.8388 0.0386
strain 10 2289.1818 228.9182 13.098 < 0.0001
sex:strain 10 146.1818 14.6182 0.8364 0.6002
Residuals 22 384.5 17.4773


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 26.5 3.54   2   2.5 0.133 24.0, 29.0 0.39
C3H/HeJ m 28.0 7.07   2   5.0 0.253 23.0, 33.0 0.28
C57BL/6J f 23.0 7.07   2   5.0 0.307 18.0, 28.0 -0.03
C57BL/6J m 24.0 0.0   2   0.0 0.0 24.0, 24.0 -0.28
CAST/EiJ f 12.5 2.12   2   1.5 0.17 11.0, 14.0 -1.27
CAST/EiJ m 14.5 0.707   2   0.5 0.0488 14.0, 15.0 -1.62
DBA/1J f 31.0 1.41   2   1.0 0.0456 30.0, 32.0 0.92
DBA/1J m 34.0 11.3   2   8.0 0.333 26.0, 42.0 1.13
MRL/MpJ f 34.5 3.54   2   2.5 0.102 32.0, 37.0 1.33
MRL/MpJ m 32.5 4.95   2   3.5 0.152 29.0, 36.0 0.92
MRL/MpJ Faslpr-Foxq1sa-J/J f 23.5 0.707   2   0.5 0.0301 23.0, 24.0 0.03
MRL/MpJ Faslpr-Foxq1sa-J/J m 25.5 2.12   2   1.5 0.0832 24.0, 27.0 -0.07
NOD/ShiLtJ f 19.5 2.12   2   1.5 0.109 18.0, 21.0 -0.44
NOD/ShiLtJ m 25.0 1.41   2   1.0 0.0566 24.0, 26.0 -0.14
NZW/LacJ f 23.0 4.24   2   3.0 0.184 20.0, 26.0 -0.03
NZW/LacJ m 28.5 2.12   2   1.5 0.0744 27.0, 30.0 0.35
SB/LeJ f 35.0 1.41   2   1.0 0.0404 34.0, 36.0 1.39
SB/LeJ m 32.0 0.0   2   0.0 0.0 32.0, 32.0 0.85
STOCK a/a Tmem79ma Flgft/J f 8.0 5.66   2   4.0 0.707 4.0, 12.0 -1.8
STOCK a/a Tmem79ma Flgft/J m 12.0 0.0   2   0.0 0.0 12.0, 12.0 -1.98
WSB/EiJ f 19.0 0.0   2   0.0 0.0 19.0, 19.0 -0.5
WSB/EiJ m 30.0 5.66   2   4.0 0.189 26.0, 34.0 0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 26.5 2.9561 32.6306 20.3694
C3H/HeJ m 28.0 2.9561 34.1306 21.8694
C57BL/6J f 23.0 2.9561 29.1306 16.8694
C57BL/6J m 24.0 2.9561 30.1306 17.8694
CAST/EiJ f 12.5 2.9561 18.6306 6.3694
CAST/EiJ m 14.5 2.9561 20.6306 8.3694
DBA/1J f 31.0 2.9561 37.1306 24.8694
DBA/1J m 34.0 2.9561 40.1306 27.8694
MRL/MpJ f 34.5 2.9561 40.6306 28.3694
MRL/MpJ m 32.5 2.9561 38.6306 26.3694
MRL/MpJ Faslpr-Foxq1sa-J/J f 23.5 2.9561 29.6306 17.3694
MRL/MpJ Faslpr-Foxq1sa-J/J m 25.5 2.9561 31.6306 19.3694
NOD/ShiLtJ f 19.5 2.9561 25.6306 13.3694
NOD/ShiLtJ m 25.0 2.9561 31.1306 18.8694
NZW/LacJ f 23.0 2.9561 29.1306 16.8694
NZW/LacJ m 28.5 2.9561 34.6306 22.3694
SB/LeJ f 35.0 2.9561 41.1306 28.8694
SB/LeJ m 32.0 2.9561 38.1306 25.8694
STOCK a/a Tmem79ma Flgft/J f 8.0 2.9561 14.1306 1.8694
STOCK a/a Tmem79ma Flgft/J m 12.0 2.9561 18.1306 5.8694
WSB/EiJ f 19.0 2.9561 25.1306 12.8694
WSB/EiJ m 30.0 2.9561 36.1306 23.8694


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 27.25 2.0903 31.585 22.915
C57BL/6J both 23.5 2.0903 27.835 19.165
CAST/EiJ both 13.5 2.0903 17.835 9.165
DBA/1J both 32.5 2.0903 36.835 28.165
MRL/MpJ both 33.5 2.0903 37.835 29.165
MRL/MpJ Faslpr-Foxq1sa-J/J both 24.5 2.0903 28.835 20.165
NOD/ShiLtJ both 22.25 2.0903 26.585 17.915
NZW/LacJ both 25.75 2.0903 30.085 21.415
SB/LeJ both 33.5 2.0903 37.835 29.165
STOCK a/a Tmem79ma Flgft/J both 10.0 2.0903 14.335 5.665
WSB/EiJ both 24.5 2.0903 28.835 20.165




  GWAS USING LINEAR MIXED MODELS