Project measure / variable:   Rice1   Krtap6_2

ID, description, units MPD:49230   Krtap6_2   KRTAP6-2, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Rice1 - KRTAP6-2, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.64   None 2.73   None
Median of the strain means3.50   None 4.00   None
SD of the strain means± 1.99 ± 2.13
Coefficient of variation (CV)0.754 0.779
Min–max range of strain means0   –   5.00   None 0   –   5.00   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0909 0.0909 0.0476 0.8293
strain 10 144.5455 14.4545 7.5714 < 0.0001
sex:strain 10 24.9091 2.4909 1.3048 0.2875
Residuals 22 42.0 1.9091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 0.0 0.0   2   0.0 0.0 -1.33
C3H/HeJ m 1.5 2.12   2   1.5 1.41 -0.58
C57BL/6J f 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.69
C57BL/6J m 4.0 2.83   2   2.0 0.707 2.0, 6.0 0.6
CAST/EiJ f 0.0 0.0   2   0.0 0.0 -1.33
CAST/EiJ m 0.0 0.0   2   0.0 0.0 -1.28
DBA/1J f 1.5 2.12   2   1.5 1.41 -0.57
DBA/1J m 1.5 2.12   2   1.5 1.41 -0.58
MRL/MpJ f 5.0 1.41   2   1.0 0.283 4.0, 6.0 1.19
MRL/MpJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.6
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.0 1.41   2   1.0 0.354 3.0, 5.0 0.69
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.83
NOD/ShiLtJ f 3.5 0.707   2   0.5 0.202 3.0, 4.0 0.43
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -1.28
NZW/LacJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.94
NZW/LacJ m 5.0 1.41   2   1.0 0.283 4.0, 6.0 1.07
SB/LeJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.94
SB/LeJ m 4.5 0.707   2   0.5 0.157 4.0, 5.0 0.83
STOCK a/a Tmem79ma Flgft/J f 0.0 0.0   2   0.0 0.0 -1.33
STOCK a/a Tmem79ma Flgft/J m 0.0 0.0   2   0.0 0.0 -1.28
WSB/EiJ f 2.0 2.83   2   2.0 1.41 -0.32
WSB/EiJ m 5.0 0.0   2   0.0 0.0 5.0, 5.0 1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 0.0 0.977 2.0262 -2.0262
C3H/HeJ m 1.5 0.977 3.5262 -0.5262
C57BL/6J f 4.0 0.977 6.0262 1.9738
C57BL/6J m 4.0 0.977 6.0262 1.9738
CAST/EiJ f 0.0 0.977 2.0262 -2.0262
CAST/EiJ m 0.0 0.977 2.0262 -2.0262
DBA/1J f 1.5 0.977 3.5262 -0.5262
DBA/1J m 1.5 0.977 3.5262 -0.5262
MRL/MpJ f 5.0 0.977 7.0262 2.9738
MRL/MpJ m 4.0 0.977 6.0262 1.9738
MRL/MpJ Faslpr-Foxq1sa-J/J f 4.0 0.977 6.0262 1.9738
MRL/MpJ Faslpr-Foxq1sa-J/J m 4.5 0.977 6.5262 2.4738
NOD/ShiLtJ f 3.5 0.977 5.5262 1.4738
NOD/ShiLtJ m 0.0 0.977 2.0262 -2.0262
NZW/LacJ f 4.5 0.977 6.5262 2.4738
NZW/LacJ m 5.0 0.977 7.0262 2.9738
SB/LeJ f 4.5 0.977 6.5262 2.4738
SB/LeJ m 4.5 0.977 6.5262 2.4738
STOCK a/a Tmem79ma Flgft/J f 0.0 0.977 2.0262 -2.0262
STOCK a/a Tmem79ma Flgft/J m 0.0 0.977 2.0262 -2.0262
WSB/EiJ f 2.0 0.977 4.0262 -0.0262
WSB/EiJ m 5.0 0.977 7.0262 2.9738


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 0.75 0.6908 2.1827 -0.6827
C57BL/6J both 4.0 0.6908 5.4327 2.5673
CAST/EiJ both 0.0 0.6908 1.4327 -1.4327
DBA/1J both 1.5 0.6908 2.9327 0.0673
MRL/MpJ both 4.5 0.6908 5.9327 3.0673
MRL/MpJ Faslpr-Foxq1sa-J/J both 4.25 0.6908 5.6827 2.8173
NOD/ShiLtJ both 1.75 0.6908 3.1827 0.3173
NZW/LacJ both 4.75 0.6908 6.1827 3.3173
SB/LeJ both 4.5 0.6908 5.9327 3.0673
STOCK a/a Tmem79ma Flgft/J both 0.0 0.6908 1.4327 -1.4327
WSB/EiJ both 3.5 0.6908 4.9327 2.0673




  GWAS USING LINEAR MIXED MODELS