Project measure / variable:   Rice1   Eef1a1

ID, description, units MPD:49211   Eef1a1   EEF1A1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - EEF1A1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means14.9   None 13.5   None
Median of the strain means14.5   None 14.0   None
SD of the strain means± 4.25 ± 3.70
Coefficient of variation (CV)0.285 0.273
Min–max range of strain means7.00   –   22.5   None 7.00   –   19.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 20.4545 20.4545 3.125 0.091
strain 10 548.7273 54.8727 8.3833 < 0.0001
sex:strain 10 86.5455 8.6545 1.3222 0.2791
Residuals 22 144.0 6.5455


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 7.0 4.24   2   3.0 0.606 4.0, 10.0 -1.86
C3H/HeJ m 7.0 0.0   2   0.0 0.0 7.0, 7.0 -1.77
C57BL/6J f 15.5 0.707   2   0.5 0.0456 15.0, 16.0 0.14
C57BL/6J m 13.5 0.707   2   0.5 0.0524 13.0, 14.0 -0.01
CAST/EiJ f 14.5 2.12   2   1.5 0.146 13.0, 16.0 -0.1
CAST/EiJ m 13.0 2.83   2   2.0 0.218 11.0, 15.0 -0.15
DBA/1J f 19.0 4.24   2   3.0 0.223 16.0, 22.0 0.96
DBA/1J m 15.5 2.12   2   1.5 0.137 14.0, 17.0 0.53
MRL/MpJ f 22.5 3.54   2   2.5 0.157 20.0, 25.0 1.79
MRL/MpJ m 15.0 2.83   2   2.0 0.189 13.0, 17.0 0.39
MRL/MpJ Faslpr-Foxq1sa-J/J f 13.5 0.707   2   0.5 0.0524 13.0, 14.0 -0.33
MRL/MpJ Faslpr-Foxq1sa-J/J m 16.5 0.707   2   0.5 0.0429 16.0, 17.0 0.8
NOD/ShiLtJ f 18.5 2.12   2   1.5 0.115 17.0, 20.0 0.85
NOD/ShiLtJ m 16.5 0.707   2   0.5 0.0429 16.0, 17.0 0.8
NZW/LacJ f 16.0 2.83   2   2.0 0.177 14.0, 18.0 0.26
NZW/LacJ m 19.0 4.24   2   3.0 0.223 16.0, 22.0 1.47
SB/LeJ f 10.0 2.83   2   2.0 0.283 8.0, 12.0 -1.16
SB/LeJ m 7.5 2.12   2   1.5 0.283 6.0, 9.0 -1.63
STOCK a/a Tmem79ma Flgft/J f 13.5 2.12   2   1.5 0.157 12.0, 15.0 -0.33
STOCK a/a Tmem79ma Flgft/J m 11.5 2.12   2   1.5 0.184 10.0, 13.0 -0.55
WSB/EiJ f 14.0 2.83   2   2.0 0.202 12.0, 16.0 -0.21
WSB/EiJ m 14.0 2.83   2   2.0 0.202 12.0, 16.0 0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 7.0 1.8091 10.7518 3.2482
C3H/HeJ m 7.0 1.8091 10.7518 3.2482
C57BL/6J f 15.5 1.8091 19.2518 11.7482
C57BL/6J m 13.5 1.8091 17.2518 9.7482
CAST/EiJ f 14.5 1.8091 18.2518 10.7482
CAST/EiJ m 13.0 1.8091 16.7518 9.2482
DBA/1J f 19.0 1.8091 22.7518 15.2482
DBA/1J m 15.5 1.8091 19.2518 11.7482
MRL/MpJ f 22.5 1.8091 26.2518 18.7482
MRL/MpJ m 15.0 1.8091 18.7518 11.2482
MRL/MpJ Faslpr-Foxq1sa-J/J f 13.5 1.8091 17.2518 9.7482
MRL/MpJ Faslpr-Foxq1sa-J/J m 16.5 1.8091 20.2518 12.7482
NOD/ShiLtJ f 18.5 1.8091 22.2518 14.7482
NOD/ShiLtJ m 16.5 1.8091 20.2518 12.7482
NZW/LacJ f 16.0 1.8091 19.7518 12.2482
NZW/LacJ m 19.0 1.8091 22.7518 15.2482
SB/LeJ f 10.0 1.8091 13.7518 6.2482
SB/LeJ m 7.5 1.8091 11.2518 3.7482
STOCK a/a Tmem79ma Flgft/J f 13.5 1.8091 17.2518 9.7482
STOCK a/a Tmem79ma Flgft/J m 11.5 1.8091 15.2518 7.7482
WSB/EiJ f 14.0 1.8091 17.7518 10.2482
WSB/EiJ m 14.0 1.8091 17.7518 10.2482


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 7.0 1.2792 9.6529 4.3471
C57BL/6J both 14.5 1.2792 17.1529 11.8471
CAST/EiJ both 13.75 1.2792 16.4029 11.0971
DBA/1J both 17.25 1.2792 19.9029 14.5971
MRL/MpJ both 18.75 1.2792 21.4029 16.0971
MRL/MpJ Faslpr-Foxq1sa-J/J both 15.0 1.2792 17.6529 12.3471
NOD/ShiLtJ both 17.5 1.2792 20.1529 14.8471
NZW/LacJ both 17.5 1.2792 20.1529 14.8471
SB/LeJ both 8.75 1.2792 11.4029 6.0971
STOCK a/a Tmem79ma Flgft/J both 12.5 1.2792 15.1529 9.8471
WSB/EiJ both 14.0 1.2792 16.6529 11.3471




  GWAS USING LINEAR MIXED MODELS