Project measure / variable:   Rice1   Ass1

ID, description, units MPD:49204   Ass1   ASS1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - ASS1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means7.14   None 6.68   None
Median of the strain means7.00   None 7.00   None
SD of the strain means± 4.07 ± 3.82
Coefficient of variation (CV)0.571 0.572
Min–max range of strain means0   –   13.5   None 0   –   11.0   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.2727 2.2727 0.6849 0.4168
strain 10 598.6364 59.8636 18.0411 < 0.0001
sex:strain 10 25.7273 2.5727 0.7753 0.6511
Residuals 22 73.0 3.3182


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 10.0 1.41   2   1.0 0.141 9.0, 11.0 0.7
C3H/HeJ m 8.5 0.707   2   0.5 0.0832 8.0, 9.0 0.48
C57BL/6J f 13.5 0.707   2   0.5 0.0524 13.0, 14.0 1.56
C57BL/6J m 11.0 0.0   2   0.0 0.0 11.0, 11.0 1.13
CAST/EiJ f 11.5 3.54   2   2.5 0.307 9.0, 14.0 1.07
CAST/EiJ m 11.0 4.24   2   3.0 0.386 8.0, 14.0 1.13
DBA/1J f 6.0 1.41   2   1.0 0.236 5.0, 7.0 -0.28
DBA/1J m 3.5 0.707   2   0.5 0.202 3.0, 4.0 -0.83
MRL/MpJ f 9.0 4.24   2   3.0 0.471 6.0, 12.0 0.46
MRL/MpJ m 11.0 1.41   2   1.0 0.129 10.0, 12.0 1.13
MRL/MpJ Faslpr-Foxq1sa-J/J f 1.5 2.12   2   1.5 1.41 -1.38
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.5 2.12   2   1.5 1.41 -1.36
NOD/ShiLtJ f 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.65
NOD/ShiLtJ m 7.0 1.41   2   1.0 0.202 6.0, 8.0 0.08
NZW/LacJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 -0.16
NZW/LacJ m 6.0 0.0   2   0.0 0.0 6.0, 6.0 -0.18
SB/LeJ f 0.0 0.0   2   0.0 0.0 -1.75
SB/LeJ m 0.0 0.0   2   0.0 0.0 -1.75
STOCK a/a Tmem79ma Flgft/J f 9.0 1.41   2   1.0 0.157 8.0, 10.0 0.46
STOCK a/a Tmem79ma Flgft/J m 8.5 0.707   2   0.5 0.0832 8.0, 9.0 0.48
WSB/EiJ f 7.0 1.41   2   1.0 0.202 6.0, 8.0 -0.03
WSB/EiJ m 5.5 0.707   2   0.5 0.129 5.0, 6.0 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 10.0 1.2881 12.6713 7.3287
C3H/HeJ m 8.5 1.2881 11.1713 5.8287
C57BL/6J f 13.5 1.2881 16.1713 10.8287
C57BL/6J m 11.0 1.2881 13.6713 8.3287
CAST/EiJ f 11.5 1.2881 14.1713 8.8287
CAST/EiJ m 11.0 1.2881 13.6713 8.3287
DBA/1J f 6.0 1.2881 8.6713 3.3287
DBA/1J m 3.5 1.2881 6.1713 0.8287
MRL/MpJ f 9.0 1.2881 11.6713 6.3287
MRL/MpJ m 11.0 1.2881 13.6713 8.3287
MRL/MpJ Faslpr-Foxq1sa-J/J f 1.5 1.2881 4.1713 -1.1713
MRL/MpJ Faslpr-Foxq1sa-J/J m 1.5 1.2881 4.1713 -1.1713
NOD/ShiLtJ f 4.5 1.2881 7.1713 1.8287
NOD/ShiLtJ m 7.0 1.2881 9.6713 4.3287
NZW/LacJ f 6.5 1.2881 9.1713 3.8287
NZW/LacJ m 6.0 1.2881 8.6713 3.3287
SB/LeJ f 0.0 1.2881 2.6713 -2.6713
SB/LeJ m 0.0 1.2881 2.6713 -2.6713
STOCK a/a Tmem79ma Flgft/J f 9.0 1.2881 11.6713 6.3287
STOCK a/a Tmem79ma Flgft/J m 8.5 1.2881 11.1713 5.8287
WSB/EiJ f 7.0 1.2881 9.6713 4.3287
WSB/EiJ m 5.5 1.2881 8.1713 2.8287


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 9.25 0.9108 11.1389 7.3611
C57BL/6J both 12.25 0.9108 14.1389 10.3611
CAST/EiJ both 11.25 0.9108 13.1389 9.3611
DBA/1J both 4.75 0.9108 6.6389 2.8611
MRL/MpJ both 10.0 0.9108 11.8889 8.1111
MRL/MpJ Faslpr-Foxq1sa-J/J both 1.5 0.9108 3.3889 -0.3889
NOD/ShiLtJ both 5.75 0.9108 7.6389 3.8611
NZW/LacJ both 6.25 0.9108 8.1389 4.3611
SB/LeJ both 0.0 0.9108 1.8889 -1.8889
STOCK a/a Tmem79ma Flgft/J both 8.75 0.9108 10.6389 6.8611
WSB/EiJ both 6.25 0.9108 8.1389 4.3611




  GWAS USING LINEAR MIXED MODELS