Project measure / variable:   HMDPpheno5   RBC

ID, description, units MPD:48943   RBC   red blood cell count (RBC; units per volume x 106)   [n/µL]  
Data set, strains HMDPpheno5   HMDP w/par   83 strains     sex: m     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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HMDPpheno5 - red blood cell count (RBC; units per volume x 106)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested83 strains
Mean of the strain means8.43   n/µL
Median of the strain means8.47   n/µL
SD of the strain means± 1.54
Coefficient of variation (CV)0.183
Min–max range of strain means4.14   –   12.0   n/µL
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 82 624.2596 7.6129 4.2419 < 0.0001
Residuals 150 269.2057 1.7947


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 6.09 1.05   2   0.74 0.172 5.35, 6.83 -1.52
AXB10/PgnJ m 6.78 0.106   2   0.075 0.0157 6.7, 6.85 -1.07
AXB12/PgnJ m 7.34 1.26   2   0.89 0.171 6.45, 8.23 -0.71
AXB13/PgnJ m 9.41 0.983   2   0.695 0.104 8.72, 10.1 0.63
AXB15/PgnJ m 5.9 0.707   2   0.5 0.12 5.4, 6.4 -1.64
AXB19b/PgnJ m 7.09 2.47   4 1.24 0.349 4.45, 9.42 -0.87
AXB19/PgnJ m 8.62 0.778   2   0.55 0.0902 8.07, 9.17 0.12
AXB23/PgnJ m 7.09 3.75   2   2.65 0.529 4.44, 9.74 -0.87
AXB2/PgnJ m 6.17 5.76   2   4.07 0.933 2.1, 10.2 -1.47
AXB4/PgnJ m 8.94 2.16   2   1.53 0.242 7.41, 10.5 0.33
AXB5/PgnJ m 7.45 0.233   2   0.165 0.0313 7.28, 7.61 -0.64
AXB6/PgnJ m 10.5 0.0212   2   0.015 0.00203 10.4, 10.5 1.34
AXB8/PgnJ m 8.4 1.56   2   1.1 0.185 7.3, 9.5 -0.02
BALB/cJ m 9.04 0.87   2   0.615 0.0963 8.42, 9.65 0.39
BTBR T+ Itpr3tf/J m 8.09 0.177   2   0.125 0.0219 7.96, 8.21 -0.22
BXA11/PgnJ m 8.03 0.948   2   0.67 0.118 7.36, 8.7 -0.26
BXA12/PgnJ m 7.79 1.42   2   1.0 0.183 6.78, 8.79 -0.42
BXA13/PgnJ m 9.98 0.177   2   0.125 0.0177 9.86, 10.1 1.0
BXA14/PgnJ m 7.79 1.79   2   1.27 0.23 6.52, 9.05 -0.42
BXA16/PgnJ m 6.94 3.31   3 1.91 0.476 3.17, 9.35 -0.97
BXA24/PgnJ m 8.61 0.368   2   0.26 0.0427 8.35, 8.87 0.11
BXA25/PgnJ m 5.46 2.4   2   1.69 0.439 3.76, 7.15 -1.93
BXA26/PgnJ m 8.96 1.03   2   0.725 0.114 8.24, 9.69 0.34
BXA2/PgnJ m 9.18 0.474   2   0.335 0.0516 8.85, 9.52 0.48
BXA4/PgnJ m 7.1 2.18   2   1.54 0.307 5.56, 8.64 -0.86
BXA7/PgnJ m 8.63 0.424   2   0.3 0.0492 8.33, 8.93 0.13
BXA8/PgnJ m 8.88 1.22   2   0.865 0.138 8.01, 9.74 0.29
BXD12/TyJ m 7.8 0.283   2   0.2 0.0363 7.6, 8.0 -0.41
BXD13/TyJ m 8.47 1.48   2   1.05 0.175 7.42, 9.52 0.02
BXD14/TyJ m 8.63 2.02   2   1.43 0.233 7.21, 10.1 0.13
BXD15/TyJ m 8.93 0.325   2   0.23 0.0364 8.7, 9.16 0.32
BXD19/TyJ m 9.61 0.468   4 0.234 0.0487 9.2, 10.2 0.76
BXD20/TyJ m 10.9 0.693   2   0.49 0.0638 10.4, 11.4 1.6
BXD22/TyJ m 8.32 3.99   2   2.82 0.479 5.5, 11.1 -0.07
BXD24/TyJ m 7.92 2.71   2   1.91 0.342 6.0, 9.83 -0.33
BXD24/TyJ-Cep290rd16/J m 7.85 0.205   2   0.145 0.0261 7.7, 7.99 -0.38
BXD28/TyJ m 9.48 0.643   2   0.455 0.0678 9.03, 9.94 0.68
BXD29-Tlr4lps-2J/J m 8.67 0.17   2   0.12 0.0196 8.55, 8.79 0.15
BXD2/TyJ m 6.5 3.59   2   2.53 0.551 3.97, 9.04 -1.25
BXD33/TyJ m 6.25 0.297   2   0.21 0.0475 6.04, 6.46 -1.42
BXD34/TyJ m 8.57 1.27   2   0.895 0.148 7.68, 9.47 0.09
BXD40/TyJ m 6.12 0.587   2   0.415 0.096 5.7, 6.53 -1.5
BXD42/TyJ m 10.6 0.94   2   0.665 0.0888 9.92, 11.2 1.41
BXD5/TyJ m 8.34 0.686   2   0.485 0.0823 7.85, 8.82 -0.06
BXD6/TyJ m 9.96 1.14   2   0.805 0.114 9.16, 10.8 0.99
BXD8/TyJ m 8.69 0.933   2   0.66 0.107 8.03, 9.35 0.17
BXD9/TyJ m 7.84 2.85   2   2.01 0.363 5.83, 9.86 -0.38
BXH19/TyJ m 6.88 1.48   2   1.04 0.215 5.84, 7.93 -1.01
BXH20/KccJ m 7.24 0.495   2   0.35 0.0684 6.89, 7.59 -0.77
BXH2/TyJ m 6.14 1.51   2   1.07 0.246 5.07, 7.21 -1.49
BXH4/TyJ m 8.36 1.65   4 0.824 0.197 5.91, 9.44 -0.05
BXH6/TyJ m 6.44 1.48   2   1.04 0.23 5.39, 7.48 -1.29
BXH7/TyJ m 4.14 0.544   2   0.385 0.131 3.76, 4.53 -2.78
BXH8/TyJ m 8.9 0.0   2   0.0 0.0 8.9, 8.9 0.3
BXH9/TyJ m 7.5 0.898   2   0.635 0.12 6.86, 8.13 -0.61
C57BL/6J m 5.94 2.01   3 1.16 0.339 4.46, 8.23 -1.62
C57L/J m 9.02 0.467   2   0.33 0.0517 8.69, 9.35 0.38
C58/J m 8.36 2.58   2   1.82 0.309 6.53, 10.2 -0.05
CAST/EiJ m 10.1 0.191   2   0.135 0.0188 10.0, 10.3 1.08
CE/J m 8.17 0.0849   2   0.06 0.0104 8.11, 8.23 -0.17
CXB11/HiAJ m 10.5 0.795   8 0.281 0.0754 9.6, 11.6 1.34
CXB12/HiAJ m 10.7 0.511   8 0.181 0.0477 9.9, 11.5 1.47
CXB13/HiAJ m 12.0 0.506   8 0.179 0.0423 11.1, 12.5 2.31
CXB1/ByJ m 10.2 0.472   8 0.167 0.0465 9.44, 10.7 1.15
CXB2/ByJ m 10.3 1.17   6 0.476 0.113 8.57, 11.8 1.21
CXB3/ByJ m 9.64 1.52   9 0.508 0.158 5.9, 10.8 0.78
CXB4/ByJ m 11.0 0.274   8 0.0968 0.025 10.7, 11.5 1.67
CXB6/ByJ m 9.03 0.872   7 0.329 0.0965 7.53, 10.1 0.39
CXB7/ByJ m 11.2 0.237   7 0.0896 0.0212 10.9, 11.6 1.8
CXB8/HiAJ m 11.0 0.707   5 0.316 0.0642 9.76, 11.5 1.67
CXB9/HiAJ m 8.98 0.685   7 0.259 0.0763 7.81, 9.78 0.35
DBA/2J m 8.75 1.58   2   1.12 0.181 7.63, 9.87 0.21
FVB/NJ m 6.78 0.0566   2   0.04 0.00834 6.74, 6.82 -1.07
KK/HlJ m 7.12 0.332   2   0.235 0.0466 6.89, 7.36 -0.85
LG/J m 10.5 1.46   2   1.03 0.139 9.46, 11.5 1.34
LP/J m 9.24 0.438   2   0.31 0.0474 8.93, 9.55 0.52
MA/MyJ m 9.66 0.332   2   0.235 0.0344 9.42, 9.89 0.8
NZW/LacJ m 8.12 2.5   2   1.77 0.308 6.35, 9.89 -0.2
PL/J m 7.12 0.933   2   0.66 0.131 6.46, 7.78 -0.85
RIIIS/J m 8.46 0.177   2   0.125 0.0209 8.34, 8.59 0.02
SEA/GnJ m 10.8 1.11   2   0.785 0.103 10.0, 11.6 1.54
SJL/J m 7.94 1.05   2   0.74 0.132 7.2, 8.68 -0.32
SM/J m 9.98 0.764   2   0.54 0.0765 9.44, 10.5 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6.09 0.9473 7.9617 4.2183
AXB10/PgnJ m 6.775 0.9473 8.6467 4.9033
AXB12/PgnJ m 7.34 0.9473 9.2117 5.4683
AXB13/PgnJ m 9.415 0.9473 11.2867 7.5433
AXB15/PgnJ m 5.9 0.9473 7.7717 4.0283
AXB19b/PgnJ m 7.0925 0.6698 8.416 5.769
AXB19/PgnJ m 8.62 0.9473 10.4917 6.7483
AXB23/PgnJ m 7.09 0.9473 8.9617 5.2183
AXB2/PgnJ m 6.17 0.9473 8.0417 4.2983
AXB4/PgnJ m 8.94 0.9473 10.8117 7.0683
AXB5/PgnJ m 7.445 0.9473 9.3167 5.5733
AXB6/PgnJ m 10.465 0.9473 12.3367 8.5933
AXB8/PgnJ m 8.4 0.9473 10.2717 6.5283
BALB/cJ m 9.035 0.9473 10.9067 7.1633
BTBR T+ Itpr3tf/J m 8.085 0.9473 9.9567 6.2133
BXA11/PgnJ m 8.03 0.9473 9.9017 6.1583
BXA12/PgnJ m 7.785 0.9473 9.6567 5.9133
BXA13/PgnJ m 9.985 0.9473 11.8567 8.1133
BXA14/PgnJ m 7.785 0.9473 9.6567 5.9133
BXA16/PgnJ m 6.94 0.7735 8.4683 5.4117
BXA24/PgnJ m 8.61 0.9473 10.4817 6.7383
BXA25/PgnJ m 5.455 0.9473 7.3267 3.5833
BXA26/PgnJ m 8.965 0.9473 10.8367 7.0933
BXA2/PgnJ m 9.185 0.9473 11.0567 7.3133
BXA4/PgnJ m 7.1 0.9473 8.9717 5.2283
BXA7/PgnJ m 8.63 0.9473 10.5017 6.7583
BXA8/PgnJ m 8.875 0.9473 10.7467 7.0033
BXD12/TyJ m 7.8 0.9473 9.6717 5.9283
BXD13/TyJ m 8.47 0.9473 10.3417 6.5983
BXD14/TyJ m 8.635 0.9473 10.5067 6.7633
BXD15/TyJ m 8.93 0.9473 10.8017 7.0583
BXD19/TyJ m 9.61 0.6698 10.9335 8.2865
BXD20/TyJ m 10.87 0.9473 12.7417 8.9983
BXD22/TyJ m 8.32 0.9473 10.1917 6.4483
BXD24/TyJ m 7.915 0.9473 9.7867 6.0433
BXD24/TyJ-Cep290rd16/J m 7.845 0.9473 9.7167 5.9733
BXD28/TyJ m 9.485 0.9473 11.3567 7.6133
BXD29-Tlr4lps-2J/J m 8.67 0.9473 10.5417 6.7983
BXD2/TyJ m 6.505 0.9473 8.3767 4.6333
BXD33/TyJ m 6.25 0.9473 8.1217 4.3783
BXD34/TyJ m 8.575 0.9473 10.4467 6.7033
BXD40/TyJ m 6.115 0.9473 7.9867 4.2433
BXD42/TyJ m 10.585 0.9473 12.4567 8.7133
BXD5/TyJ m 8.335 0.9473 10.2067 6.4633
BXD6/TyJ m 9.965 0.9473 11.8367 8.0933
BXD8/TyJ m 8.69 0.9473 10.5617 6.8183
BXD9/TyJ m 7.845 0.9473 9.7167 5.9733
BXH19/TyJ m 6.885 0.9473 8.7567 5.0133
BXH20/KccJ m 7.24 0.9473 9.1117 5.3683
BXH2/TyJ m 6.14 0.9473 8.0117 4.2683
BXH4/TyJ m 8.36 0.6698 9.6835 7.0365
BXH6/TyJ m 6.435 0.9473 8.3067 4.5633
BXH7/TyJ m 4.145 0.9473 6.0167 2.2733
BXH8/TyJ m 8.9 0.9473 10.7717 7.0283
BXH9/TyJ m 7.495 0.9473 9.3667 5.6233
C57BL/6J m 5.94 0.7735 7.4683 4.4117
C57L/J m 9.02 0.9473 10.8917 7.1483
C58/J m 8.355 0.9473 10.2267 6.4833
CAST/EiJ m 10.145 0.9473 12.0167 8.2733
CE/J m 8.17 0.9473 10.0417 6.2983
CXB11/HiAJ m 10.5375 0.4736 11.4734 9.6016
CXB12/HiAJ m 10.7212 0.4736 11.6571 9.7854
CXB13/HiAJ m 11.9663 0.4736 12.9021 11.0304
CXB1/ByJ m 10.1525 0.4736 11.0884 9.2166
CXB2/ByJ m 10.2883 0.5469 11.369 9.2077
CXB3/ByJ m 9.6433 0.4466 10.5257 8.761
CXB4/ByJ m 10.9563 0.4736 11.8921 10.0204
CXB6/ByJ m 9.0286 0.5063 10.0291 8.0281
CXB7/ByJ m 11.2 0.5063 12.2005 10.1995
CXB8/HiAJ m 11.002 0.5991 12.1858 9.8182
CXB9/HiAJ m 8.9814 0.5063 9.9819 7.9809
DBA/2J m 8.75 0.9473 10.6217 6.8783
FVB/NJ m 6.78 0.9473 8.6517 4.9083
KK/HlJ m 7.125 0.9473 8.9967 5.2533
LG/J m 10.495 0.9473 12.3667 8.6233
LP/J m 9.24 0.9473 11.1117 7.3683
MA/MyJ m 9.655 0.9473 11.5267 7.7833
NZW/LacJ m 8.12 0.9473 9.9917 6.2483
PL/J m 7.12 0.9473 8.9917 5.2483
RIIIS/J m 8.465 0.9473 10.3367 6.5933
SEA/GnJ m 10.785 0.9473 12.6567 8.9133
SJL/J m 7.94 0.9473 9.8117 6.0683
SM/J m 9.98 0.9473 11.8517 8.1083




  GWAS USING LINEAR MIXED MODELS