Project measure / variable:   HMDPpheno5   GRA

ID, description, units MPD:48931   GRA   granulocyte count (GRA; units per volume x 103)   [n/µL]  
Data set, strains HMDPpheno5   HMDP w/par   79 strains     sex: m     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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HMDPpheno5 - granulocyte count (GRA; units per volume x 103)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested79 strains
Mean of the strain means0.785   n/µL
Median of the strain means0.750   n/µL
SD of the strain means± 0.391
Coefficient of variation (CV)0.498
Min–max range of strain means0.100   –   1.92   n/µL
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 77 48.2309 0.6264 1.9629 0.0003
Residuals 142 45.3125 0.3191


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 0.4 0.141   2   0.1 0.354 0.3, 0.5 -0.98
AXB10/PgnJ m 0.3 0.141   2   0.1 0.471 0.2, 0.4 -1.24
AXB12/PgnJ m 0.45 0.495   2   0.35 1.1 0.1, 0.8 -0.86
AXB13/PgnJ m 0.5 0.424   2   0.3 0.849 0.2, 0.8 -0.73
AXB15/PgnJ m 0.3 0.283   2   0.2 0.943 0.1, 0.5 -1.24
AXB19b/PgnJ m 0.4 0.231   4 0.115 0.577 0.2, 0.6 -0.98
AXB19/PgnJ m 0.45 0.212   2   0.15 0.471 0.3, 0.6 -0.86
AXB23/PgnJ m 0.35 0.212   2   0.15 0.606 0.2, 0.5 -1.11
AXB2/PgnJ m 0.2 0.0   2   0.0 0.0 0.2, 0.2 -1.5
AXB5/PgnJ m 0.8 0.141   2   0.1 0.177 0.7, 0.9 0.04
AXB6/PgnJ m 1.3 0.283   2   0.2 0.218 1.1, 1.5 1.31
AXB8/PgnJ m 0.7 0.141   2   0.1 0.202 0.6, 0.8 -0.22
BALB/cJ m 0.45 0.212   2   0.15 0.471 0.3, 0.6 -0.86
BTBR T+ Itpr3tf/J m 1.05 0.212   2   0.15 0.202 0.9, 1.2 0.68
BXA11/PgnJ m 0.6 0.141   2   0.1 0.236 0.5, 0.7 -0.47
BXA12/PgnJ m 1.4 1.27   2   0.9 0.909 0.5, 2.3 1.57
BXA13/PgnJ m 0.4 0.141   2   0.1 0.354 0.3, 0.5 -0.98
BXA14/PgnJ m 0.45 0.212   2   0.15 0.471 0.3, 0.6 -0.86
BXA16/PgnJ m 0.8 0.557   3 0.321 0.696 0.2, 1.3 0.04
BXA24/PgnJ m 0.4 0.424   2   0.3 1.06 0.1, 0.7 -0.98
BXA25/PgnJ m 0.6 0.424   2   0.3 0.707 0.3, 0.9 -0.47
BXA26/PgnJ m 0.5 0.141   2   0.1 0.283 0.4, 0.6 -0.73
BXA2/PgnJ m 0.5 0.141   2   0.1 0.283 0.4, 0.6 -0.73
BXA4/PgnJ m 0.1 0.0   2   0.0 0.0 0.1, 0.1 -1.75
BXA7/PgnJ m 0.5 0.424   2   0.3 0.849 0.2, 0.8 -0.73
BXA8/PgnJ m 0.4 0.0   2   0.0 0.0 0.4, 0.4 -0.98
BXD12/TyJ m 1.15 0.0707   2   0.05 0.0615 1.1, 1.2 0.93
BXD13/TyJ m 0.7 0.566   2   0.4 0.808 0.3, 1.1 -0.22
BXD14/TyJ m 0.45 0.212   2   0.15 0.471 0.3, 0.6 -0.86
BXD15/TyJ m 0.55 0.0707   2   0.05 0.129 0.5, 0.6 -0.6
BXD19/TyJ m 0.85 0.238   4 0.119 0.28 0.6, 1.1 0.17
BXD22/TyJ m 0.85 0.354   2   0.25 0.416 0.6, 1.1 0.17
BXD24/TyJ m 0.8 0.141   2   0.1 0.177 0.7, 0.9 0.04
BXD24/TyJ-Cep290rd16/J m 0.55 0.0707   2   0.05 0.129 0.5, 0.6 -0.6
BXD28/TyJ m 0.8 0.283   2   0.2 0.354 0.6, 1.0 0.04
BXD29-Tlr4lps-2J/J m 0.9 0.566   2   0.4 0.629 0.5, 1.3 0.29
BXD2/TyJ m 0.35 0.0707   2   0.05 0.202 0.3, 0.4 -1.11
BXD33/TyJ m 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.55
BXD34/TyJ m 0.6 0.424   2   0.3 0.707 0.3, 0.9 -0.47
BXD40/TyJ m 0.4 0.424   2   0.3 1.06 0.1, 0.7 -0.98
BXD42/TyJ m 1.5 0.566   2   0.4 0.377 1.1, 1.9 1.83
BXD5/TyJ m 0.75 0.495   2   0.35 0.66 0.4, 1.1 -0.09
BXD6/TyJ m 0.65 0.212   2   0.15 0.326 0.5, 0.8 -0.35
BXD9/TyJ m 0.85 0.495   2   0.35 0.582 0.5, 1.2 0.17
BXH19/TyJ m 0.4 0.0   2   0.0 0.0 0.4, 0.4 -0.98
BXH20/KccJ m 0.75 0.212   2   0.15 0.283 0.6, 0.9 -0.09
BXH2/TyJ m 0.8 0.566   2   0.4 0.707 0.4, 1.2 0.04
BXH4/TyJ m 1.15 0.919   2   0.65 0.799 0.5, 1.8 0.93
BXH6/TyJ m 0.75 0.212   2   0.15 0.283 0.6, 0.9 -0.09
BXH7/TyJ m 0.4 0.141   2   0.1 0.354 0.3, 0.5 -0.98
BXH8/TyJ m 0.55 0.0707   2   0.05 0.129 0.5, 0.6 -0.6
BXH9/TyJ m 0.95 0.354   2   0.25 0.372 0.7, 1.2 0.42
C57BL/6J m 0.533 0.404   3 0.233 0.758 0.3, 1.0 -0.64
C57L/J m 0.7 0.424   2   0.3 0.606 0.4, 1.0 -0.22
C58/J m 0.85 0.495   2   0.35 0.582 0.5, 1.2 0.17
CAST/EiJ m 1.3 0.707   2   0.5 0.544 0.8, 1.8 1.31
CE/J m 0.75 0.0707   2   0.05 0.0943 0.7, 0.8 -0.09
CXB11/HiAJ m 1.92 0.962   8 0.34 0.5 0.2, 3.1 2.9
CXB12/HiAJ m 1.76 0.667   8 0.236 0.379 0.7, 2.8 2.49
CXB13/HiAJ m 1.63 0.75   8 0.265 0.461 0.3, 2.6 2.16
CXB1/ByJ m 1.11 0.591   8 0.209 0.532 0.5, 2.1 0.83
CXB2/ByJ m 0.817 0.343   6 0.14 0.42 0.2, 1.1 0.08
CXB3/ByJ m 1.1 0.539   9 0.18 0.49 0.6, 2.4 0.8
CXB4/ByJ m 1.54 0.956   8 0.338 0.622 0.5, 3.6 1.93
CXB6/ByJ m 1.07 0.304   7 0.115 0.284 0.6, 1.6 0.73
CXB7/ByJ m 1.8 0.698   7 0.264 0.388 1.0, 2.9 2.59
CXB8/HiAJ m 1.06 0.59   5 0.264 0.557 0.4, 1.9 0.7
CXB9/HiAJ m 1.35 1.09   6 0.446 0.81 0.3, 3.0 1.44
DBA/2J m 1.05 0.212   2   0.15 0.202 0.9, 1.2 0.68
FVB/NJ m 0.7 0.0   2   0.0 0.0 0.7, 0.7 -0.22
KK/HlJ m 0.6 0.0   2   0.0 0.0 0.6, 0.6 -0.47
LG/J m 1.3 0.424   2   0.3 0.326 1.0, 1.6 1.31
LP/J m 1.1 0.141   2   0.1 0.129 1.0, 1.2 0.8
MA/MyJ m 0.35 0.0707   2   0.05 0.202 0.3, 0.4 -1.11
NZW/LacJ m 0.9 0.0   1   0.0 0.0 0.9, 0.9 0.29
PL/J m 0.9 0.141   2   0.1 0.157 0.8, 1.0 0.29
RIIIS/J m 0.65 0.0707   2   0.05 0.109 0.6, 0.7 -0.35
SEA/GnJ m 0.6 0.141   2   0.1 0.236 0.5, 0.7 -0.47
SJL/J m 0.85 0.0707   2   0.05 0.0832 0.8, 0.9 0.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 0.4 0.3994 1.1896 0.0
AXB10/PgnJ m 0.3 0.3994 1.0896 0.0
AXB12/PgnJ m 0.45 0.3994 1.2396 0.0
AXB13/PgnJ m 0.5 0.3994 1.2896 0.0
AXB15/PgnJ m 0.3 0.3994 1.0896 0.0
AXB19b/PgnJ m 0.4 0.2824 0.9583 0.0
AXB19/PgnJ m 0.45 0.3994 1.2396 0.0
AXB23/PgnJ m 0.35 0.3994 1.1396 0.0
AXB2/PgnJ m 0.2 0.3994 0.9896 0.0
AXB5/PgnJ m 0.8 0.3994 1.5896 0.0104
AXB6/PgnJ m 1.3 0.3994 2.0896 0.5104
AXB8/PgnJ m 0.7 0.3994 1.4896 0.0
BALB/cJ m 0.45 0.3994 1.2396 0.0
BTBR T+ Itpr3tf/J m 1.05 0.3994 1.8396 0.2604
BXA11/PgnJ m 0.6 0.3994 1.3896 0.0
BXA12/PgnJ m 1.4 0.3994 2.1896 0.6104
BXA13/PgnJ m 0.4 0.3994 1.1896 0.0
BXA14/PgnJ m 0.45 0.3994 1.2396 0.0
BXA16/PgnJ m 0.8 0.3261 1.4447 0.1553
BXA24/PgnJ m 0.4 0.3994 1.1896 0.0
BXA25/PgnJ m 0.6 0.3994 1.3896 0.0
BXA26/PgnJ m 0.5 0.3994 1.2896 0.0
BXA2/PgnJ m 0.5 0.3994 1.2896 0.0
BXA4/PgnJ m 0.1 0.3994 0.8896 0.0
BXA7/PgnJ m 0.5 0.3994 1.2896 0.0
BXA8/PgnJ m 0.4 0.3994 1.1896 0.0
BXD12/TyJ m 1.15 0.3994 1.9396 0.3604
BXD13/TyJ m 0.7 0.3994 1.4896 0.0
BXD14/TyJ m 0.45 0.3994 1.2396 0.0
BXD15/TyJ m 0.55 0.3994 1.3396 0.0
BXD19/TyJ m 0.85 0.2824 1.4083 0.2917
BXD22/TyJ m 0.85 0.3994 1.6396 0.0604
BXD24/TyJ m 0.8 0.3994 1.5896 0.0104
BXD24/TyJ-Cep290rd16/J m 0.55 0.3994 1.3396 0.0
BXD28/TyJ m 0.8 0.3994 1.5896 0.0104
BXD29-Tlr4lps-2J/J m 0.9 0.3994 1.6896 0.1104
BXD2/TyJ m 0.35 0.3994 1.1396 0.0
BXD33/TyJ m 1.0 0.3994 1.7896 0.2104
BXD34/TyJ m 0.6 0.3994 1.3896 0.0
BXD40/TyJ m 0.4 0.3994 1.1896 0.0
BXD42/TyJ m 1.5 0.3994 2.2896 0.7104
BXD5/TyJ m 0.75 0.3994 1.5396 0.0
BXD6/TyJ m 0.65 0.3994 1.4396 0.0
BXD9/TyJ m 0.85 0.3994 1.6396 0.0604
BXH19/TyJ m 0.4 0.3994 1.1896 0.0
BXH20/KccJ m 0.75 0.3994 1.5396 0.0
BXH2/TyJ m 0.8 0.3994 1.5896 0.0104
BXH4/TyJ m 1.15 0.3994 1.9396 0.3604
BXH6/TyJ m 0.75 0.3994 1.5396 0.0
BXH7/TyJ m 0.4 0.3994 1.1896 0.0
BXH8/TyJ m 0.55 0.3994 1.3396 0.0
BXH9/TyJ m 0.95 0.3994 1.7396 0.1604
C57BL/6J m 0.5333 0.3261 1.1781 0.0
C57L/J m 0.7 0.3994 1.4896 0.0
C58/J m 0.85 0.3994 1.6396 0.0604
CAST/EiJ m 1.3 0.3994 2.0896 0.5104
CE/J m 0.75 0.3994 1.5396 0.0
CXB11/HiAJ m 1.925 0.1997 2.3198 1.5302
CXB12/HiAJ m 1.7625 0.1997 2.1573 1.3677
CXB13/HiAJ m 1.625 0.1997 2.0198 1.2302
CXB1/ByJ m 1.1125 0.1997 1.5073 0.7177
CXB2/ByJ m 0.8167 0.2306 1.2726 0.3608
CXB3/ByJ m 1.1 0.1883 1.4722 0.7278
CXB4/ByJ m 1.5375 0.1997 1.9323 1.1427
CXB6/ByJ m 1.0714 0.2135 1.4935 0.6494
CXB7/ByJ m 1.8 0.2135 2.2221 1.3779
CXB8/HiAJ m 1.06 0.2526 1.5594 0.5606
CXB9/HiAJ m 1.35 0.2306 1.8059 0.8941
DBA/2J m 1.05 0.3994 1.8396 0.2604
FVB/NJ m 0.7 0.3994 1.4896 0.0
KK/HlJ m 0.6 0.3994 1.3896 0.0
LG/J m 1.3 0.3994 2.0896 0.5104
LP/J m 1.1 0.3994 1.8896 0.3104
MA/MyJ m 0.35 0.3994 1.1396 0.0
PL/J m 0.9 0.3994 1.6896 0.1104
RIIIS/J m 0.65 0.3994 1.4396 0.0
SEA/GnJ m 0.6 0.3994 1.3896 0.0
SJL/J m 0.85 0.3994 1.6396 0.0604




  GWAS USING LINEAR MIXED MODELS