Project measure / variable:   HMDPpheno5   LYM

ID, description, units MPD:48907   LYM   lymphocyte count (LYM; units per volume x 103)   [n/µL]  
Data set, strains HMDPpheno5   HMDP w/par   79 strains     sex: m     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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HMDPpheno5 - lymphocyte count (LYM; units per volume x 103)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested79 strains
Mean of the strain means2.45   n/µL
Median of the strain means2.20   n/µL
SD of the strain means± 1.33
Coefficient of variation (CV)0.544
Min–max range of strain means0.500   –   7.19   n/µL
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 77 589.2852 7.6531 3.1963 < 0.0001
Residuals 142 339.9927 2.3943


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 0.9 0.141   2   0.1 0.157 0.8, 1.0 -1.16
AXB10/PgnJ m 0.85 0.212   2   0.15 0.25 0.7, 1.0 -1.2
AXB12/PgnJ m 1.45 1.06   2   0.75 0.731 0.7, 2.2 -0.75
AXB13/PgnJ m 2.35 1.2   2   0.85 0.512 1.5, 3.2 -0.07
AXB15/PgnJ m 0.8 0.566   2   0.4 0.707 0.4, 1.2 -1.24
AXB19b/PgnJ m 2.2 2.13   4 1.06 0.967 0.4, 4.9 -0.19
AXB19/PgnJ m 2.05 0.778   2   0.55 0.379 1.5, 2.6 -0.3
AXB23/PgnJ m 1.25 0.354   2   0.25 0.283 1.0, 1.5 -0.9
AXB2/PgnJ m 0.9 0.99   2   0.7 1.1 0.2, 1.6 -1.16
AXB5/PgnJ m 2.65 1.2   2   0.85 0.454 1.8, 3.5 0.15
AXB6/PgnJ m 4.9 0.424   2   0.3 0.0866 4.6, 5.2 1.84
AXB8/PgnJ m 2.5 0.849   2   0.6 0.339 1.9, 3.1 0.04
BALB/cJ m 1.25 0.636   2   0.45 0.509 0.8, 1.7 -0.9
BTBR T+ Itpr3tf/J m 3.25 0.778   2   0.55 0.239 2.7, 3.8 0.6
BXA11/PgnJ m 1.95 0.354   2   0.25 0.181 1.7, 2.2 -0.37
BXA12/PgnJ m 4.55 3.46   2   2.45 0.761 2.1, 7.0 1.58
BXA13/PgnJ m 1.6 0.141   2   0.1 0.0884 1.5, 1.7 -0.64
BXA14/PgnJ m 1.3 0.424   2   0.3 0.326 1.0, 1.6 -0.86
BXA16/PgnJ m 2.3 1.81   3 1.04 0.786 0.6, 4.2 -0.11
BXA24/PgnJ m 1.4 1.13   2   0.8 0.808 0.6, 2.2 -0.79
BXA25/PgnJ m 0.9 0.566   2   0.4 0.629 0.5, 1.3 -1.16
BXA26/PgnJ m 2.45 1.91   2   1.35 0.779 1.1, 3.8 0.0
BXA2/PgnJ m 1.65 0.636   2   0.45 0.386 1.2, 2.1 -0.6
BXA4/PgnJ m 0.5 0.141   2   0.1 0.283 0.4, 0.6 -1.46
BXA7/PgnJ m 1.9 1.41   2   1.0 0.744 0.9, 2.9 -0.41
BXA8/PgnJ m 1.2 0.141   2   0.1 0.118 1.1, 1.3 -0.94
BXD12/TyJ m 2.15 0.212   2   0.15 0.0987 2.0, 2.3 -0.22
BXD13/TyJ m 2.75 2.19   2   1.55 0.797 1.2, 4.3 0.23
BXD14/TyJ m 1.3 0.566   2   0.4 0.435 0.9, 1.7 -0.86
BXD15/TyJ m 2.45 0.212   2   0.15 0.0866 2.3, 2.6 0.0
BXD19/TyJ m 2.08 0.946   4 0.473 0.456 1.3, 3.4 -0.28
BXD22/TyJ m 3.5 1.7   2   1.2 0.485 2.3, 4.7 0.79
BXD24/TyJ m 2.8 1.13   2   0.8 0.404 2.0, 3.6 0.26
BXD24/TyJ-Cep290rd16/J m 1.6 0.0   2   0.0 0.0 1.6, 1.6 -0.64
BXD28/TyJ m 3.35 1.34   2   0.95 0.401 2.4, 4.3 0.68
BXD29-Tlr4lps-2J/J m 2.2 1.27   2   0.9 0.579 1.3, 3.1 -0.19
BXD2/TyJ m 1.05 0.636   2   0.45 0.606 0.6, 1.5 -1.05
BXD33/TyJ m 2.75 0.495   2   0.35 0.18 2.4, 3.1 0.23
BXD34/TyJ m 1.65 1.34   2   0.95 0.814 0.7, 2.6 -0.6
BXD40/TyJ m 1.5 1.41   2   1.0 0.943 0.5, 2.5 -0.71
BXD42/TyJ m 4.0 1.41   2   1.0 0.354 3.0, 5.0 1.17
BXD5/TyJ m 2.05 0.778   2   0.55 0.379 1.5, 2.6 -0.3
BXD6/TyJ m 2.4 0.849   2   0.6 0.354 1.8, 3.0 -0.04
BXD9/TyJ m 4.5 2.83   2   2.0 0.629 2.5, 6.5 1.54
BXH19/TyJ m 1.05 0.212   2   0.15 0.202 0.9, 1.2 -1.05
BXH20/KccJ m 1.95 0.0707   2   0.05 0.0363 1.9, 2.0 -0.37
BXH2/TyJ m 1.4 0.99   2   0.7 0.707 0.7, 2.1 -0.79
BXH4/TyJ m 2.8 2.12   2   1.5 0.758 1.3, 4.3 0.26
BXH6/TyJ m 1.8 0.424   2   0.3 0.236 1.5, 2.1 -0.49
BXH7/TyJ m 0.8 0.283   2   0.2 0.354 0.6, 1.0 -1.24
BXH8/TyJ m 1.65 0.212   2   0.15 0.129 1.5, 1.8 -0.6
BXH9/TyJ m 2.4 0.566   2   0.4 0.236 2.0, 2.8 -0.04
C57BL/6J m 1.77 1.76   3 1.02 0.997 0.7, 3.8 -0.51
C57L/J m 2.2 0.707   2   0.5 0.321 1.7, 2.7 -0.19
C58/J m 2.35 1.48   2   1.05 0.632 1.3, 3.4 -0.07
CAST/EiJ m 3.2 1.41   2   1.0 0.442 2.2, 4.2 0.57
CE/J m 1.95 0.636   2   0.45 0.326 1.5, 2.4 -0.37
CXB11/HiAJ m 6.22 2.43   8 0.859 0.39 1.1, 8.4 2.83
CXB12/HiAJ m 7.19 1.19   8 0.42 0.165 5.5, 8.7 3.56
CXB13/HiAJ m 5.31 2.75   8 0.973 0.518 1.1, 8.4 2.15
CXB1/ByJ m 4.82 2.25   8 0.795 0.466 1.3, 7.4 1.78
CXB2/ByJ m 2.55 0.704   6 0.287 0.276 1.5, 3.3 0.08
CXB3/ByJ m 3.12 0.938   9 0.313 0.3 2.2, 4.9 0.5
CXB4/ByJ m 5.11 1.12   8 0.395 0.219 3.6, 6.8 2.0
CXB6/ByJ m 2.53 1.09   7 0.412 0.431 1.0, 4.1 0.06
CXB7/ByJ m 4.16 1.3   7 0.492 0.313 2.8, 6.5 1.29
CXB8/HiAJ m 3.24 0.893   5 0.399 0.276 2.1, 4.2 0.6
CXB9/HiAJ m 4.43 3.42   6 1.4 0.772 0.8, 10.0 1.49
DBA/2J m 2.7 0.707   2   0.5 0.262 2.2, 3.2 0.19
FVB/NJ m 1.6 0.283   2   0.2 0.177 1.4, 1.8 -0.64
KK/HlJ m 0.95 0.212   2   0.15 0.223 0.8, 1.1 -1.13
LG/J m 3.1 1.98   2   1.4 0.639 1.7, 4.5 0.49
LP/J m 3.25 0.636   2   0.45 0.196 2.8, 3.7 0.6
MA/MyJ m 1.15 0.354   2   0.25 0.307 0.9, 1.4 -0.98
NZW/LacJ m 4.4 0.0   1   0.0 0.0 4.4, 4.4 1.47
PL/J m 2.3 0.283   2   0.2 0.123 2.1, 2.5 -0.11
RIIIS/J m 1.25 0.0707   2   0.05 0.0566 1.2, 1.3 -0.9
SEA/GnJ m 2.25 1.06   2   0.75 0.471 1.5, 3.0 -0.15
SJL/J m 3.35 0.0707   2   0.05 0.0211 3.3, 3.4 0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 0.9 1.0941 3.0629 0.0
AXB10/PgnJ m 0.85 1.0941 3.0129 0.0
AXB12/PgnJ m 1.45 1.0941 3.6129 0.0
AXB13/PgnJ m 2.35 1.0941 4.5129 0.1871
AXB15/PgnJ m 0.8 1.0941 2.9629 0.0
AXB19b/PgnJ m 2.2 0.7737 3.7294 0.6706
AXB19/PgnJ m 2.05 1.0941 4.2129 0.0
AXB23/PgnJ m 1.25 1.0941 3.4129 0.0
AXB2/PgnJ m 0.9 1.0941 3.0629 0.0
AXB5/PgnJ m 2.65 1.0941 4.8129 0.4871
AXB6/PgnJ m 4.9 1.0941 7.0629 2.7371
AXB8/PgnJ m 2.5 1.0941 4.6629 0.3371
BALB/cJ m 1.25 1.0941 3.4129 0.0
BTBR T+ Itpr3tf/J m 3.25 1.0941 5.4129 1.0871
BXA11/PgnJ m 1.95 1.0941 4.1129 0.0
BXA12/PgnJ m 4.55 1.0941 6.7129 2.3871
BXA13/PgnJ m 1.6 1.0941 3.7629 0.0
BXA14/PgnJ m 1.3 1.0941 3.4629 0.0
BXA16/PgnJ m 2.3 0.8934 4.066 0.534
BXA24/PgnJ m 1.4 1.0941 3.5629 0.0
BXA25/PgnJ m 0.9 1.0941 3.0629 0.0
BXA26/PgnJ m 2.45 1.0941 4.6129 0.2871
BXA2/PgnJ m 1.65 1.0941 3.8129 0.0
BXA4/PgnJ m 0.5 1.0941 2.6629 0.0
BXA7/PgnJ m 1.9 1.0941 4.0629 0.0
BXA8/PgnJ m 1.2 1.0941 3.3629 0.0
BXD12/TyJ m 2.15 1.0941 4.3129 0.0
BXD13/TyJ m 2.75 1.0941 4.9129 0.5871
BXD14/TyJ m 1.3 1.0941 3.4629 0.0
BXD15/TyJ m 2.45 1.0941 4.6129 0.2871
BXD19/TyJ m 2.075 0.7737 3.6044 0.5456
BXD22/TyJ m 3.5 1.0941 5.6629 1.3371
BXD24/TyJ m 2.8 1.0941 4.9629 0.6371
BXD24/TyJ-Cep290rd16/J m 1.6 1.0941 3.7629 0.0
BXD28/TyJ m 3.35 1.0941 5.5129 1.1871
BXD29-Tlr4lps-2J/J m 2.2 1.0941 4.3629 0.0371
BXD2/TyJ m 1.05 1.0941 3.2129 0.0
BXD33/TyJ m 2.75 1.0941 4.9129 0.5871
BXD34/TyJ m 1.65 1.0941 3.8129 0.0
BXD40/TyJ m 1.5 1.0941 3.6629 0.0
BXD42/TyJ m 4.0 1.0941 6.1629 1.8371
BXD5/TyJ m 2.05 1.0941 4.2129 0.0
BXD6/TyJ m 2.4 1.0941 4.5629 0.2371
BXD9/TyJ m 4.5 1.0941 6.6629 2.3371
BXH19/TyJ m 1.05 1.0941 3.2129 0.0
BXH20/KccJ m 1.95 1.0941 4.1129 0.0
BXH2/TyJ m 1.4 1.0941 3.5629 0.0
BXH4/TyJ m 2.8 1.0941 4.9629 0.6371
BXH6/TyJ m 1.8 1.0941 3.9629 0.0
BXH7/TyJ m 0.8 1.0941 2.9629 0.0
BXH8/TyJ m 1.65 1.0941 3.8129 0.0
BXH9/TyJ m 2.4 1.0941 4.5629 0.2371
C57BL/6J m 1.7667 0.8934 3.5327 0.0006
C57L/J m 2.2 1.0941 4.3629 0.0371
C58/J m 2.35 1.0941 4.5129 0.1871
CAST/EiJ m 3.2 1.0941 5.3629 1.0371
CE/J m 1.95 1.0941 4.1129 0.0
CXB11/HiAJ m 6.225 0.5471 7.3065 5.1435
CXB12/HiAJ m 7.1875 0.5471 8.269 6.106
CXB13/HiAJ m 5.3125 0.5471 6.394 4.231
CXB1/ByJ m 4.825 0.5471 5.9065 3.7435
CXB2/ByJ m 2.55 0.6317 3.7988 1.3012
CXB3/ByJ m 3.1222 0.5158 4.1418 2.1026
CXB4/ByJ m 5.1125 0.5471 6.194 4.031
CXB6/ByJ m 2.5286 0.5848 3.6847 1.3724
CXB7/ByJ m 4.1571 0.5848 5.3133 3.001
CXB8/HiAJ m 3.24 0.692 4.608 1.872
CXB9/HiAJ m 4.4333 0.6317 5.6821 3.1846
DBA/2J m 2.7 1.0941 4.8629 0.5371
FVB/NJ m 1.6 1.0941 3.7629 0.0
KK/HlJ m 0.95 1.0941 3.1129 0.0
LG/J m 3.1 1.0941 5.2629 0.9371
LP/J m 3.25 1.0941 5.4129 1.0871
MA/MyJ m 1.15 1.0941 3.3129 0.0
PL/J m 2.3 1.0941 4.4629 0.1371
RIIIS/J m 1.25 1.0941 3.4129 0.0
SEA/GnJ m 2.25 1.0941 4.4129 0.0871
SJL/J m 3.35 1.0941 5.5129 1.1871




  GWAS USING LINEAR MIXED MODELS