Project measure / variable:   Haston1   BAL_mac

ID, description, units MPD:48803   BAL_mac   percentage of macrophages in bronchoalveolar lavage   [%]  
radiation study
Data set, strains Haston1   inbred   26 strains     sex: both     age: 15-36wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Haston1 - percentage of macrophages in bronchoalveolar lavage



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains16 strains
Mean of the strain means71.5   % 75.6   %
Median of the strain means73.4   % 77.9   %
SD of the strain means± 8.39 ± 8.98
Coefficient of variation (CV)0.117 0.119
Min–max range of strain means54.0   –   94.1   % 55.6   –   86.8   %
Mean sample size per strain5.9   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 962.9972 962.9972 5.1333 0.0261
strain 8 4904.5045 613.0631 3.2679 0.0028
sex:strain 8 664.5395 83.0674 0.4428 0.8918
Residuals 82 15383.1888 187.5999


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 63.5 22.0   6 8.98 0.346 22.2, 87.9 -0.95
129S1/SvImJ m 66.3 12.5   7 4.74 0.189 50.2, 82.8 -1.03
A/J f 78.8 13.8   4 6.88 0.175 58.4, 88.5 0.87
A/J m 84.0 3.74   5 1.67 0.0445 78.6, 88.0 0.94
AKR/J f 73.3 11.3   8 4.01 0.155 57.9, 89.8 0.21
AKR/J m 81.3 12.9   6 5.28 0.159 59.1, 94.9 0.64
BALB/cJ f 74.5 9.93   5 4.44 0.133 65.0, 91.0 0.36
BTBR T+ Itpr3tf/J f 62.9 1.58   2   1.12 0.0252 61.8, 64.0 -1.02
BTBR T+ Itpr3tf/J m 69.5 8.3   6 3.39 0.119 58.0, 81.1 -0.68
BUB/BnJ f 73.9 14.7   6 5.99 0.198 55.8, 90.4 0.29
C3H/HeJ f 66.6 18.6   8 6.56 0.279 36.4, 89.2 -0.58
C57BL/6J f 94.1 0.0   1   0.0 0.0 94.1, 94.1 2.69
C57BL/6J m 82.3 11.9   8 4.2 0.144 62.2, 93.1 0.75
C57BLKS/J m 78.0 6.62   5 2.96 0.0848 69.9, 87.2 0.27
C58/J f 75.3 6.89   9 2.3 0.0916 59.8, 80.8 0.45
CBA/J m 84.0 4.9   5 2.19 0.0583 77.3, 90.4 0.94
CE/J f 78.4 13.0   8 4.61 0.166 53.4, 92.0 0.82
DBA/2J f 65.8 16.8   10 5.31 0.255 32.3, 85.9 -0.68
DBA/2J m 77.8 14.2   9 4.73 0.182 54.0, 93.5 0.25
FVB/NJ f 73.5 13.3   7 5.04 0.181 47.1, 84.6 0.24
FVB/NJ m 76.8 12.0   6 4.9 0.156 64.3, 93.2 0.14
I/LnJ f 69.8 5.13   8 1.81 0.0735 64.0, 78.6 -0.2
KK/HlJ f 54.0 18.1   4 9.06 0.336 33.2, 77.4 -2.08
KK/HlJ m 60.6 16.4   4 8.18 0.27 44.9, 77.2 -1.67
LG/J f 75.2 9.53   10 3.01 0.127 58.8, 88.2 0.44
LP/J m 74.3 9.44   3 5.45 0.127 68.2, 85.2 -0.14
MA/MyJ f 63.4 26.6   7 10.1 0.42 31.8, 94.7 -0.97
NOD/ShiLtJ f 73.6 5.61   4 2.8 0.0762 67.7, 81.2 0.25
NOD/ShiLtJ m 83.8 15.6   7 5.91 0.187 50.5, 98.9 0.92
NON/ShiLtJ f 79.4 12.3   3 7.1 0.155 65.3, 88.0 0.94
NZB/BlNJ m 70.0 2.45   2   1.73 0.0351 68.3, 71.7 -0.62
NZW/LacJ f 67.4 3.49   3 2.01 0.0518 65.2, 71.4 -0.49
NZW/LacJ m 55.6 1.59   2   1.12 0.0286 54.5, 56.8 -2.22
PL/J f 66.6 5.13   4 2.57 0.0771 61.4, 73.2 -0.58
SJL/J m 78.0 12.4   3 7.17 0.159 64.7, 89.2 0.27
SM/J m 86.8 2.02   3 1.17 0.0233 84.5, 88.2 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 63.5083 5.5917 74.6319 52.3847
129S1/SvImJ m 66.3214 5.1769 76.6199 56.023
A/J f 78.775 6.8484 92.3986 65.1514
A/J m 84.01 6.1254 96.1953 71.8247
AKR/J f 73.2613 4.8425 82.8946 63.6279
AKR/J m 81.3083 5.5917 92.4319 70.1847
BTBR T+ Itpr3tf/J f 62.91 9.685 82.1766 43.6434
BTBR T+ Itpr3tf/J m 69.4833 5.5917 80.6069 58.3597
DBA/2J f 65.795 4.3313 74.4113 57.1787
DBA/2J m 77.7889 4.5656 86.8713 68.7065
FVB/NJ f 73.4529 5.1769 83.7513 63.1544
FVB/NJ m 76.7617 5.5917 87.8853 65.6381
KK/HlJ f 54.0175 6.8484 67.6411 40.3939
KK/HlJ m 60.59 6.8484 74.2136 46.9664
NOD/ShiLtJ f 73.5525 6.8484 87.1761 59.9289
NOD/ShiLtJ m 83.7943 5.1769 94.0927 73.4958
NZW/LacJ f 67.3533 7.9078 83.0845 51.6222
NZW/LacJ m 55.625 9.685 74.8916 36.3584


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 64.9149 3.8101 72.4943 57.3354
A/J both 81.3925 4.594 90.5315 72.2535
AKR/J both 77.2848 3.6985 84.6424 69.9272
BTBR T+ Itpr3tf/J both 66.1967 5.5917 77.3203 55.0731
DBA/2J both 71.7919 3.1466 78.0515 65.5324
FVB/NJ both 75.1073 3.8101 82.6867 67.5278
KK/HlJ both 57.3038 4.8425 66.9371 47.6704
NOD/ShiLtJ both 78.6734 4.2924 87.2124 70.1344
NZW/LacJ both 61.4892 6.2517 73.9257 49.0526




  GWAS USING LINEAR MIXED MODELS