Project measure / variable:   Donahue14   fecundity_index

ID, description, units MPD:42306   fecundity_index   mean litter size divided by mean litter interval   [n/wks]  
Data set, strains Donahue14   BXD   40 strains     sex: f     age: 3-60wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Donahue14 - mean litter size divided by mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested40 strains
Mean of the strain means1.27   n/wks
Median of the strain means1.27   n/wks
SD of the strain means± 0.293
Coefficient of variation (CV)0.231
Min–max range of strain means0.500   –   2.10   n/wks
Mean sample size per strain3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 5.0518 0.1684 1.2148 0.2275
Residuals 126 17.4656 0.1386


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ f 1.33 0.294   6 0.12 0.221 1.0, 1.8 0.21
BXD101/RwwJ f 1.36 0.757   5 0.339 0.557 0.4, 2.4 0.31
BXD102/RwwJ f 1.7 0.0   1   0.0 0.0 1.7, 1.7 1.47
BXD43/RwwJ f 1.4 0.0   1   0.0 0.0 1.4, 1.4 0.44
BXD44/RwwJ f 1.2 0.0   1   0.0 0.0 1.2, 1.2 -0.24
BXD45/RwwJ f 0.8 0.245   4 0.122 0.306 0.5, 1.1 -1.6
BXD48a/RwwJ f 1.44 0.167   5 0.0748 0.116 1.2, 1.6 0.58
BXD48/RwwJ f 1.23 0.395   4 0.197 0.322 0.9, 1.8 -0.14
BXD49/RwwJ f 1.36 0.403   9 0.134 0.298 0.7, 1.8 0.31
BXD50/RwwJ f 1.1 0.707   2   0.5 0.643 0.6, 1.6 -0.58
BXD51/RwwJ f 1.2 0.0   2   0.0 0.0 1.2, 1.2 -0.24
BXD55/RwwJ f 1.7 0.0   1   0.0 0.0 1.7, 1.7 1.47
BXD60/RwwJ f 1.21 0.297   7 0.112 0.244 0.8, 1.6 -0.2
BXD61/RwwJ f 1.45 0.0707   2   0.05 0.0488 1.4, 1.5 0.61
BXD62/RwwJ f 1.27 0.208   3 0.12 0.164 1.1, 1.5 0.0
BXD63/RwwJ f 0.5 0.424   2   0.3 0.849 0.2, 0.8 -2.62
BXD64/RwwJ f 1.3 0.406   17 0.0985 0.312 0.5, 2.1 0.1
BXD65a/RwwJ f 1.33 0.238   8 0.084 0.179 1.0, 1.7 0.21
BXD65/RwwJ f 2.1 0.0   1   0.0 0.0 2.1, 2.1 2.83
BXD67/RwwJ f 0.967 0.462   3 0.267 0.478 0.7, 1.5 -1.03
BXD68/RwwJ f 1.23 0.208   3 0.12 0.169 1.0, 1.4 -0.14
BXD69/RwwJ f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.78
BXD70/RwwJ f 1.3 0.0   1   0.0 0.0 1.3, 1.3 0.1
BXD71/RwwJ f 1.2 0.458   3 0.265 0.382 0.7, 1.6 -0.24
BXD73a/RwwJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 2.49
BXD73b/RwwJ f 1.26 0.266   11 0.0801 0.21 0.9, 1.8 -0.03
BXD73/RwwJ f 1.25 0.0707   2   0.05 0.0566 1.2, 1.3 -0.07
BXD74/RwwJ f 1.1 0.0   1   0.0 0.0 1.1, 1.1 -0.58
BXD75/RwwJ f 1.35 0.465   4 0.233 0.345 0.7, 1.8 0.27
BXD77/RwwJ f 0.75 0.0707   2   0.05 0.0943 0.7, 0.8 -1.77
BXD79/RwwJ f 1.15 0.495   2   0.35 0.43 0.8, 1.5 -0.41
BXD83/RwwJ f 0.967 0.416   3 0.24 0.431 0.5, 1.3 -1.03
BXD84/RwwJ f 0.975 0.331   12 0.0954 0.339 0.6, 1.6 -1.0
BXD85/RwwJ f 1.47 0.538   4 0.269 0.365 0.8, 2.1 0.68
BXD86/RwwJ f 1.43 0.525   4 0.263 0.369 1.1, 2.2 0.55
BXD87/RwwJ f 1.2 0.265   3 0.153 0.22 0.9, 1.4 -0.24
BXD89/RwwJ f 1.07 0.0577   3 0.0333 0.0541 1.0, 1.1 -0.68
BXD90/RwwJ f 1.06 0.321   5 0.144 0.303 0.8, 1.6 -0.71
BXD98/RwwJ f 1.31 0.401   13 0.111 0.307 0.7, 1.9 0.14
BXD99/RwwJ f 1.27 0.15   4 0.075 0.118 1.1, 1.4 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ f 1.3333 0.152 1.6341 1.0325
BXD101/RwwJ f 1.36 0.1665 1.6895 1.0305
BXD45/RwwJ f 0.8 0.1862 1.1684 0.4316
BXD48a/RwwJ f 1.44 0.1665 1.7695 1.1105
BXD48/RwwJ f 1.225 0.1862 1.5934 0.8566
BXD49/RwwJ f 1.3556 0.1241 1.6012 1.11
BXD50/RwwJ f 1.1 0.2633 1.621 0.579
BXD51/RwwJ f 1.2 0.2633 1.721 0.679
BXD60/RwwJ f 1.2143 0.1407 1.4928 0.9358
BXD61/RwwJ f 1.45 0.2633 1.971 0.929
BXD62/RwwJ f 1.2667 0.215 1.6921 0.8413
BXD63/RwwJ f 0.5 0.2633 1.021 0.0
BXD64/RwwJ f 1.3 0.0903 1.4787 1.1213
BXD65a/RwwJ f 1.325 0.1316 1.5855 1.0645
BXD67/RwwJ f 0.9667 0.215 1.3921 0.5413
BXD68/RwwJ f 1.2333 0.215 1.6587 0.8079
BXD71/RwwJ f 1.2 0.215 1.6254 0.7746
BXD73b/RwwJ f 1.2636 0.1123 1.4858 1.0415
BXD73/RwwJ f 1.25 0.2633 1.771 0.729
BXD75/RwwJ f 1.35 0.1862 1.7184 0.9816
BXD77/RwwJ f 0.75 0.2633 1.271 0.229
BXD79/RwwJ f 1.15 0.2633 1.671 0.629
BXD83/RwwJ f 0.9667 0.215 1.3921 0.5413
BXD84/RwwJ f 0.975 0.1075 1.1877 0.7623
BXD85/RwwJ f 1.475 0.1862 1.8434 1.1066
BXD86/RwwJ f 1.425 0.1862 1.7934 1.0566
BXD87/RwwJ f 1.2 0.215 1.6254 0.7746
BXD89/RwwJ f 1.0667 0.215 1.4921 0.6413
BXD90/RwwJ f 1.06 0.1665 1.3895 0.7305
BXD98/RwwJ f 1.3077 0.1033 1.512 1.1033
BXD99/RwwJ f 1.275 0.1862 1.6434 0.9066




GWAS analysis not available: SNP data is not available for enough strains (at least 4)