Project measure / variable:   Donahue11   fecundity_index

ID, description, units MPD:42006   fecundity_index   mean litter size divided by mean litter interval   [n/wks]  
Data set, strains Donahue11   B6.PWD consomic   26 strains     sex: f     age: 4-55wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue11 - mean litter size divided by mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested26 strains
Mean of the strain means0.930   n/wks
Median of the strain means0.978   n/wks
SD of the strain means± 0.284
Coefficient of variation (CV)0.306
Min–max range of strain means0.350   –   1.39   n/wks
Mean sample size per strain6.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 24 16.0542 0.6689 6.6854 < 0.0001
Residuals 155 15.509 0.1001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 1.16 0.374   8 0.132 0.322 0.9, 2.0 0.81
B6.PWD-Chr10.1 f 0.775 0.271   8 0.0959 0.35 0.5, 1.3 -0.54
B6.PWD-Chr10.2 f 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.25
B6.PWD-Chr10.3 f 0.969 0.246   13 0.0683 0.254 0.6, 1.4 0.14
B6.PWD-Chr11.1 f 1.1 0.141   4 0.0707 0.129 0.9, 1.2 0.6
B6.PWD-Chr11.2 f 1.0 0.308   5 0.138 0.308 0.6, 1.3 0.25
B6.PWD-Chr11.3 f 0.72 0.228   5 0.102 0.317 0.5, 1.0 -0.74
B6.PWD-Chr12 f 1.33 0.287   7 0.108 0.216 1.1, 1.9 1.41
B6.PWD-Chr13 f 0.35 0.238   4 0.119 0.68 0.2, 0.7 -2.04
B6.PWD-Chr14 f 1.05 0.0707   2   0.05 0.0673 1.0, 1.1 0.42
B6.PWD-Chr15 f 0.95 0.351   4 0.176 0.37 0.6, 1.3 0.07
B6.PWD-Chr16 f 1.23 0.33   4 0.165 0.27 0.9, 1.6 1.06
B6.PWD-Chr17 f 1.27 0.48   8 0.17 0.377 0.7, 2.1 1.2
B6.PWD-Chr18 f 0.733 0.374   9 0.125 0.51 0.3, 1.3 -0.69
B6.PWD-Chr19 f 1.25 0.284   11 0.0857 0.226 0.8, 1.8 1.13
B6.PWD-Chr2 f 0.72 0.239   5 0.107 0.332 0.5, 1.1 -0.74
B6.PWD-Chr3 f 0.833 0.379   3 0.219 0.454 0.4, 1.1 -0.34
B6.PWD-Chr4 f 0.48 0.408   10 0.129 0.849 0.1, 1.6 -1.58
B6.PWD-Chr5 f 0.986 0.297   7 0.112 0.301 0.6, 1.5 0.2
B6.PWD-Chr6 f 1.05 0.354   2   0.25 0.337 0.8, 1.3 0.42
B6.PWD-Chr8 f 0.567 0.239   12 0.0689 0.421 0.2, 1.0 -1.28
B6.PWD-Chr9 f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.51
B6.PWD-ChrX.1 f 1.26 0.41   8 0.145 0.325 0.7, 1.8 1.16
B6.PWD-ChrX.2 f 0.643 0.29   14 0.0775 0.451 0.2, 1.1 -1.01
B6.PWD-ChrX.3 f 0.857 0.172   7 0.0649 0.2 0.6, 1.1 -0.26
B6.PWD-ChrY f 1.39 0.342   18 0.0806 0.245 0.7, 1.9 1.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 1.1625 0.1118 1.3834 0.9416
B6.PWD-Chr10.1 f 0.775 0.1118 0.9959 0.5541
B6.PWD-Chr10.2 f 1.0 0.2237 1.4418 0.5582
B6.PWD-Chr10.3 f 0.9692 0.0877 1.1425 0.7959
B6.PWD-Chr11.1 f 1.1 0.1582 1.4124 0.7876
B6.PWD-Chr11.2 f 1.0 0.1415 1.2794 0.7206
B6.PWD-Chr11.3 f 0.72 0.1415 0.9994 0.4406
B6.PWD-Chr12 f 1.3286 0.1196 1.5647 1.0924
B6.PWD-Chr13 f 0.35 0.1582 0.6624 0.0376
B6.PWD-Chr14 f 1.05 0.2237 1.4918 0.6082
B6.PWD-Chr15 f 0.95 0.1582 1.2624 0.6376
B6.PWD-Chr16 f 1.225 0.1582 1.5374 0.9126
B6.PWD-Chr17 f 1.275 0.1118 1.4959 1.0541
B6.PWD-Chr18 f 0.7333 0.1054 0.9416 0.525
B6.PWD-Chr19 f 1.2545 0.0954 1.4429 1.0661
B6.PWD-Chr2 f 0.72 0.1415 0.9994 0.4406
B6.PWD-Chr3 f 0.8333 0.1826 1.1941 0.4726
B6.PWD-Chr4 f 0.48 0.1 0.6776 0.2824
B6.PWD-Chr5 f 0.9857 0.1196 1.2219 0.7495
B6.PWD-Chr6 f 1.05 0.2237 1.4918 0.6082
B6.PWD-Chr8 f 0.5667 0.0913 0.747 0.3863
B6.PWD-ChrX.1 f 1.2625 0.1118 1.4834 1.0416
B6.PWD-ChrX.2 f 0.6429 0.0845 0.8099 0.4759
B6.PWD-ChrX.3 f 0.8571 0.1196 1.0933 0.621
B6.PWD-ChrY f 1.3944 0.0746 1.5417 1.2472




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA