Project measure / variable:   Donahue5   pct_MONO

ID, description, units MPD:41403   pct_MONO   monocyte differential (percentage of viable WBC)   [%]  
Data set, strains Donahue5   B6.A consomic w/par   22 strains     sex: both     age: 7wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Donahue5 - monocyte differential (percentage of viable WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means5.53   % 6.93   %
Median of the strain means5.03   % 6.29   %
SD of the strain means± 2.02 ± 2.53
Coefficient of variation (CV)0.365 0.365
Min–max range of strain means2.67   –   10.4   % 2.98   –   14.0   %
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 174.6153 174.6153 47.3829 < 0.0001
strain 21 1867.9502 88.95 24.1371 < 0.0001
sex:strain 21 111.3932 5.3044 1.4394 0.0969
Residuals 341 1256.6523 3.6852


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.82 2.29   16 0.573 0.6 1.01, 6.99 -0.85
A/J m 4.84 2.67   16 0.667 0.551 1.72, 8.33 -0.83
B6.A-Chr1 f 4.0 0.87   8 0.308 0.218 2.27, 5.0 -0.76
B6.A-Chr1 m 6.05 0.745   8 0.263 0.123 5.06, 6.9 -0.35
B6.A-Chr10 f 7.91 2.35   8 0.831 0.297 4.33, 10.6 1.18
B6.A-Chr10 m 8.75 3.44   8 1.22 0.393 3.5, 12.5 0.72
B6.A-Chr11 f 5.41 1.21   8 0.429 0.224 3.46, 7.08 -0.06
B6.A-Chr11 m 7.24 1.77   8 0.624 0.244 5.01, 9.77 0.12
B6.A-Chr12 f 5.56 1.45   8 0.513 0.261 2.77, 7.07 0.02
B6.A-Chr12 m 7.89 1.72   8 0.607 0.217 5.38, 10.3 0.38
B6.A-Chr13 f 8.73 1.99   8 0.703 0.228 6.11, 12.1 1.59
B6.A-Chr13 m 8.25 1.05   8 0.371 0.127 6.75, 9.67 0.52
B6.A-Chr14 f 4.44 1.28   8 0.454 0.289 3.0, 6.85 -0.54
B6.A-Chr14 m 5.5 0.709   8 0.251 0.129 4.2, 6.43 -0.56
B6.A-Chr15 f 4.16 1.61   8 0.569 0.387 0.696, 5.7 -0.68
B6.A-Chr15 m 8.05 1.18   8 0.416 0.146 6.23, 10.0 0.44
B6.A-Chr16 f 7.43 2.99   8 1.06 0.402 4.17, 11.2 0.94
B6.A-Chr16 m 8.01 2.93   8 1.04 0.366 5.35, 12.6 0.43
B6.A-Chr17 f 3.24 1.09   8 0.385 0.336 1.19, 4.67 -1.13
B6.A-Chr17 m 4.36 0.744   8 0.263 0.171 2.98, 5.23 -1.02
B6.A-Chr18 f 4.99 1.55   8 0.547 0.31 3.58, 8.24 -0.27
B6.A-Chr18 m 6.54 3.19   8 1.13 0.488 3.36, 12.1 -0.15
B6.A-Chr19 f 6.31 1.37   8 0.483 0.216 4.07, 8.7 0.39
B6.A-Chr19 m 7.37 1.08   8 0.381 0.146 5.77, 8.8 0.18
B6.A-Chr2 f 3.62 0.601   9 0.2 0.166 2.9, 4.9 -0.94
B6.A-Chr2 m 4.05 0.671   8 0.237 0.166 3.05, 5.03 -1.14
B6.A-Chr3 f 8.37 2.08   8 0.735 0.248 5.65, 12.2 1.41
B6.A-Chr3 m 11.6 2.45   8 0.865 0.211 8.68, 14.9 1.85
B6.A-Chr4 f 3.91 0.775   8 0.274 0.198 2.51, 4.65 -0.8
B6.A-Chr4 m 5.96 2.03   8 0.719 0.341 4.43, 10.8 -0.38
B6.A-Chr5 f 4.25 1.01   8 0.355 0.236 2.89, 5.96 -0.63
B6.A-Chr5 m 5.14 1.19   8 0.422 0.232 3.18, 6.96 -0.71
B6.A-Chr6 f 4.7 1.54   8 0.545 0.328 2.64, 6.59 -0.41
B6.A-Chr6 m 5.22 1.25   8 0.444 0.241 3.57, 7.0 -0.68
B6.A-Chr7 f 5.41 1.81   8 0.641 0.335 3.13, 8.18 -0.06
B6.A-Chr7 m 6.05 1.64   8 0.581 0.271 4.0, 8.48 -0.35
B6.A-Chr8 f 7.18 1.72   8 0.608 0.239 4.6, 9.91 0.82
B6.A-Chr8 m 9.22 2.99   8 1.06 0.324 3.55, 13.8 0.91
B6.A-Chr9 f 5.06 1.23   8 0.434 0.243 2.39, 6.38 -0.23
B6.A-Chr9 m 5.32 0.902   8 0.319 0.17 4.19, 6.78 -0.64
B6.A-ChrX f 10.4 2.77   8 0.979 0.267 6.13, 13.8 2.42
B6.A-ChrX m 14.0 4.45   8 1.57 0.319 7.69, 20.4 2.8
C57BL/6J f 2.67 1.21   16 0.302 0.453 0.89, 4.94 -1.42
C57BL/6J m 2.98 1.61   16 0.404 0.542 0.545, 5.47 -1.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.8187 0.4799 4.7627 2.8748
A/J m 4.8413 0.4799 5.7852 3.8973
B6.A-Chr1 f 3.9988 0.6787 5.3337 2.6638
B6.A-Chr1 m 6.0463 0.6787 7.3812 4.7113
B6.A-Chr10 f 7.905 0.6787 9.24 6.57
B6.A-Chr10 m 8.75 0.6787 10.085 7.415
B6.A-Chr11 f 5.405 0.6787 6.74 4.07
B6.A-Chr11 m 7.2438 0.6787 8.5787 5.9088
B6.A-Chr12 f 5.5562 0.6787 6.8912 4.2213
B6.A-Chr12 m 7.8912 0.6787 9.2262 6.5563
B6.A-Chr13 f 8.735 0.6787 10.07 7.4
B6.A-Chr13 m 8.2487 0.6787 9.5837 6.9138
B6.A-Chr14 f 4.4375 0.6787 5.7725 3.1025
B6.A-Chr14 m 5.5025 0.6787 6.8375 4.1675
B6.A-Chr15 f 4.162 0.6787 5.497 2.827
B6.A-Chr15 m 8.055 0.6787 9.39 6.72
B6.A-Chr16 f 7.4312 0.6787 8.7662 6.0963
B6.A-Chr16 m 8.0137 0.6787 9.3487 6.6788
B6.A-Chr17 f 3.2408 0.6787 4.5757 1.9058
B6.A-Chr17 m 4.3563 0.6787 5.6912 3.0213
B6.A-Chr18 f 4.9925 0.6787 6.3275 3.6575
B6.A-Chr18 m 6.5412 0.6787 7.8762 5.2063
B6.A-Chr19 f 6.31 0.6787 7.645 4.975
B6.A-Chr19 m 7.3688 0.6787 8.7037 6.0338
B6.A-Chr2 f 3.6248 0.6399 4.8834 2.3661
B6.A-Chr2 m 4.0512 0.6787 5.3862 2.7163
B6.A-Chr3 f 8.3663 0.6787 9.7012 7.0313
B6.A-Chr3 m 11.5775 0.6787 12.9125 10.2425
B6.A-Chr4 f 3.9114 0.6787 5.2464 2.5764
B6.A-Chr4 m 5.9566 0.6787 7.2916 4.6216
B6.A-Chr5 f 4.2537 0.6787 5.5887 2.9188
B6.A-Chr5 m 5.1438 0.6787 6.4787 3.8088
B6.A-Chr6 f 4.7012 0.6787 6.0362 3.3663
B6.A-Chr6 m 5.2162 0.6787 6.5512 3.8813
B6.A-Chr7 f 5.4071 0.6787 6.7421 4.0721
B6.A-Chr7 m 6.0512 0.6787 7.3862 4.7163
B6.A-Chr8 f 7.1825 0.6787 8.5175 5.8475
B6.A-Chr8 m 9.2225 0.6787 10.5575 7.8875
B6.A-Chr9 f 5.0625 0.6787 6.3975 3.7275
B6.A-Chr9 m 5.32 0.6787 6.655 3.985
B6.A-ChrX f 10.3813 0.6787 11.7162 9.0463
B6.A-ChrX m 13.95 0.6787 15.285 12.615
C57BL/6J f 2.6664 0.4799 3.6104 1.7224
C57BL/6J m 2.9797 0.4799 3.9237 2.0357


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 4.33 0.3394 4.9975 3.6625
B6.A-Chr1 both 5.0225 0.4799 5.9665 4.0785
B6.A-Chr10 both 8.3275 0.4799 9.2715 7.3835
B6.A-Chr11 both 6.3244 0.4799 7.2684 5.3804
B6.A-Chr12 both 6.7237 0.4799 7.6677 5.7798
B6.A-Chr13 both 8.4919 0.4799 9.4359 7.5479
B6.A-Chr14 both 4.97 0.4799 5.914 4.026
B6.A-Chr15 both 6.1085 0.4799 7.0525 5.1645
B6.A-Chr16 both 7.7225 0.4799 8.6665 6.7785
B6.A-Chr17 both 3.7985 0.4799 4.7425 2.8545
B6.A-Chr18 both 5.7669 0.4799 6.7109 4.8229
B6.A-Chr19 both 6.8394 0.4799 7.7834 5.8954
B6.A-Chr2 both 3.838 0.4664 4.7554 2.9206
B6.A-Chr3 both 9.9719 0.4799 10.9159 9.0279
B6.A-Chr4 both 4.934 0.4799 5.878 3.99
B6.A-Chr5 both 4.6988 0.4799 5.6427 3.7548
B6.A-Chr6 both 4.9587 0.4799 5.9027 4.0148
B6.A-Chr7 both 5.7292 0.4799 6.6732 4.7852
B6.A-Chr8 both 8.2025 0.4799 9.1465 7.2585
B6.A-Chr9 both 5.1913 0.4799 6.1352 4.2473
B6.A-ChrX both 12.1656 0.4799 13.1096 11.2216
C57BL/6J both 2.823 0.3394 3.4905 2.1555




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA