Project measure / variable:   Donahue4   distance_perimeter

ID, description, units MPD:41341   distance_perimeter   distance traveled along perimeter of arena, thigmotaxis, 10 min test   [cm]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - distance traveled along perimeter of arena, thigmotaxis, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means1391   cm 1327   cm
Median of the strain means1365   cm 1357   cm
SD of the strain means± 308 ± 248
Coefficient of variation (CV)0.221 0.187
Min–max range of strain means853   –   2498   cm 826   –   1839   cm
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 367103.6199 367103.6199 4.1145 0.0432
strain 27 26775145.2858 991672.0476 11.1146 < 0.0001
sex:strain 27 5627364.7181 208420.9155 2.336 0.0003
Residuals 371 33101613.3833 89222.6776


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 1320.0 243.0   8 85.8 0.184 1034.0, 1685.0 -0.23
B6.PWD-Chr1 m 1206.0 233.0   8 82.4 0.193 942.0, 1540.0 -0.49
B6.PWD-Chr10.1 f 1402.0 341.0   8 121.0 0.243 1020.0, 2020.0 0.04
B6.PWD-Chr10.1 m 1440.0 561.0   8 198.0 0.389 1027.0, 2585.0 0.45
B6.PWD-Chr10.2 f 1218.0 207.0   8 73.3 0.17 955.0, 1475.0 -0.56
B6.PWD-Chr10.2 m 1107.0 164.0   8 58.1 0.149 959.0, 1370.0 -0.89
B6.PWD-Chr10.3 f 1261.0 227.0   8 80.1 0.18 997.0, 1551.0 -0.42
B6.PWD-Chr10.3 m 1087.0 152.0   8 53.6 0.14 886.0, 1369.0 -0.97
B6.PWD-Chr11.1 f 1328.0 165.0   8 58.4 0.124 1065.0, 1531.0 -0.2
B6.PWD-Chr11.1 m 1378.0 210.0   8 74.4 0.153 1065.0, 1667.0 0.2
B6.PWD-Chr11.2 f 1074.0 259.0   7 97.8 0.241 834.0, 1473.0 -1.03
B6.PWD-Chr11.2 m 1009.0 203.0   7 76.7 0.201 816.0, 1411.0 -1.28
B6.PWD-Chr11.3 f 1118.0 336.0   8 119.0 0.3 503.0, 1477.0 -0.89
B6.PWD-Chr11.3 m 1204.0 441.0   8 156.0 0.367 538.0, 1979.0 -0.5
B6.PWD-Chr12 f 1576.0 254.0   8 89.9 0.161 1322.0, 2080.0 0.6
B6.PWD-Chr12 m 1404.0 299.0   8 106.0 0.213 916.0, 1889.0 0.31
B6.PWD-Chr13 f 1803.0 430.0   8 152.0 0.239 1380.0, 2700.0 1.34
B6.PWD-Chr13 m 1767.0 331.0   8 117.0 0.187 1263.0, 2248.0 1.77
B6.PWD-Chr14 f 1646.0 444.0   8 157.0 0.27 1147.0, 2216.0 0.83
B6.PWD-Chr14 m 1657.0 430.0   8 152.0 0.259 1065.0, 2389.0 1.33
B6.PWD-Chr15 f 1402.0 258.0   8 91.2 0.184 1053.0, 1860.0 0.04
B6.PWD-Chr15 m 1399.0 189.0   8 66.8 0.135 1147.0, 1686.0 0.29
B6.PWD-Chr16 f 1565.0 277.0   8 97.8 0.177 1323.0, 2096.0 0.57
B6.PWD-Chr16 m 1641.0 299.0   8 106.0 0.182 1283.0, 2253.0 1.26
B6.PWD-Chr17 f 1094.0 191.0   8 67.4 0.174 768.0, 1305.0 -0.96
B6.PWD-Chr17 m 826.0 185.0   6 75.4 0.224 657.0, 1167.0 -2.02
B6.PWD-Chr18 f 1455.0 525.0   8 186.0 0.361 1173.0, 2742.0 0.21
B6.PWD-Chr18 m 1336.0 206.0   8 72.8 0.154 1041.0, 1641.0 0.03
B6.PWD-Chr19 f 1140.0 220.0   8 77.6 0.193 862.0, 1571.0 -0.81
B6.PWD-Chr19 m 1327.0 282.0   7 107.0 0.213 1102.0, 1803.0 0.0
B6.PWD-Chr2 f 2498.0 420.0   8 149.0 0.168 2010.0, 3353.0 3.6
B6.PWD-Chr2 m 1511.0 456.0   8 161.0 0.302 633.0, 2033.0 0.74
B6.PWD-Chr3 f 1554.0 264.0   8 93.3 0.17 1238.0, 1929.0 0.53
B6.PWD-Chr3 m 1382.0 246.0   3 142.0 0.178 1128.0, 1620.0 0.22
B6.PWD-Chr5 f 1147.0 238.0   8 84.0 0.207 821.0, 1523.0 -0.79
B6.PWD-Chr5 m 1176.0 296.0   8 105.0 0.252 806.0, 1612.0 -0.61
B6.PWD-Chr6 f 1251.0 397.0   8 140.0 0.317 694.0, 1706.0 -0.45
B6.PWD-Chr6 m 1509.0 389.0   8 138.0 0.258 1095.0, 2307.0 0.73
B6.PWD-Chr8 f 1580.0 240.0   5 107.0 0.152 1276.0, 1950.0 0.61
B6.PWD-Chr8 m 1489.0 226.0   6 92.5 0.152 1076.0, 1717.0 0.65
B6.PWD-Chr9 f 1460.0 329.0   8 116.0 0.225 1035.0, 2006.0 0.22
B6.PWD-Chr9 m 1839.0 302.0   8 107.0 0.164 1271.0, 2181.0 2.06
B6.PWD-ChrX.1 f 1683.0 300.0   6 123.0 0.178 1347.0, 2230.0 0.95
B6.PWD-ChrX.1 m 1502.0 308.0   8 109.0 0.205 902.0, 1811.0 0.7
B6.PWD-ChrX.2 f 1475.0 234.0   8 82.6 0.158 1199.0, 1950.0 0.27
B6.PWD-ChrX.2 m 1432.0 286.0   7 108.0 0.2 995.0, 1867.0 0.42
B6.PWD-ChrX.3 f 1126.0 342.0   8 121.0 0.304 762.0, 1632.0 -0.86
B6.PWD-ChrX.3 m 1031.0 128.0   8 45.1 0.124 871.0, 1262.0 -1.2
B6.PWD-ChrY f 1445.0 304.0   7 115.0 0.21 1173.0, 2044.0 0.18
B6.PWD-ChrY m 1260.0 171.0   7 64.8 0.136 981.0, 1496.0 -0.27
B6.PWD-mt f 1238.0 191.0   8 67.7 0.155 836.0, 1484.0 -0.5
B6.PWD-mt m 1159.0 138.0   8 48.8 0.119 972.0, 1358.0 -0.68
C57BL/6J f 1233.0 235.0   8 83.0 0.19 822.0, 1611.0 -0.51
C57BL/6J m 1188.0 212.0   8 75.0 0.178 980.0, 1578.0 -0.56
PWD/PhJ f 853.0 264.0   7 99.7 0.309 465.0, 1130.0 -1.75
PWD/PhJ m 901.0 210.0   8 74.2 0.233 655.0, 1180.0 -1.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 1319.75 105.607 1527.4133 1112.0867
B6.PWD-Chr1 m 1205.75 105.607 1413.4133 998.0867
B6.PWD-Chr10.1 f 1402.125 105.607 1609.7883 1194.4617
B6.PWD-Chr10.1 m 1440.25 105.607 1647.9133 1232.5867
B6.PWD-Chr10.2 f 1218.375 105.607 1426.0383 1010.7117
B6.PWD-Chr10.2 m 1106.875 105.607 1314.5383 899.2117
B6.PWD-Chr10.3 f 1261.125 105.607 1468.7883 1053.4617
B6.PWD-Chr10.3 m 1086.75 105.607 1294.4133 879.0867
B6.PWD-Chr11.1 f 1327.75 105.607 1535.4133 1120.0867
B6.PWD-Chr11.1 m 1378.375 105.607 1586.0383 1170.7117
B6.PWD-Chr11.2 f 1073.8571 112.8986 1295.8586 851.8557
B6.PWD-Chr11.2 m 1009.2857 112.8986 1231.2872 787.2843
B6.PWD-Chr11.3 f 1118.5 105.607 1326.1633 910.8367
B6.PWD-Chr11.3 m 1203.875 105.607 1411.5383 996.2117
B6.PWD-Chr12 f 1575.625 105.607 1783.2883 1367.9617
B6.PWD-Chr12 m 1403.625 105.607 1611.2883 1195.9617
B6.PWD-Chr13 f 1803.375 105.607 2011.0383 1595.7117
B6.PWD-Chr13 m 1767.125 105.607 1974.7883 1559.4617
B6.PWD-Chr14 f 1646.375 105.607 1854.0383 1438.7117
B6.PWD-Chr14 m 1656.75 105.607 1864.4133 1449.0867
B6.PWD-Chr15 f 1401.875 105.607 1609.5383 1194.2117
B6.PWD-Chr15 m 1398.875 105.607 1606.5383 1191.2117
B6.PWD-Chr16 f 1564.875 105.607 1772.5383 1357.2117
B6.PWD-Chr16 m 1641.0 105.607 1848.6633 1433.3367
B6.PWD-Chr17 f 1093.5 105.607 1301.1633 885.8367
B6.PWD-Chr17 m 825.6667 121.9444 1065.4556 585.8777
B6.PWD-Chr18 f 1454.625 105.607 1662.2883 1246.9617
B6.PWD-Chr18 m 1336.125 105.607 1543.7883 1128.4617
B6.PWD-Chr19 f 1140.375 105.607 1348.0383 932.7117
B6.PWD-Chr19 m 1327.2857 112.8986 1549.2872 1105.2843
B6.PWD-Chr2 f 2498.25 105.607 2705.9133 2290.5867
B6.PWD-Chr2 m 1511.0 105.607 1718.6633 1303.3367
B6.PWD-Chr3 f 1554.0 105.607 1761.6633 1346.3367
B6.PWD-Chr3 m 1382.3333 172.4555 1721.4461 1043.2205
B6.PWD-Chr5 f 1147.25 105.607 1354.9133 939.5867
B6.PWD-Chr5 m 1175.875 105.607 1383.5383 968.2117
B6.PWD-Chr6 f 1250.75 105.607 1458.4133 1043.0867
B6.PWD-Chr6 m 1508.875 105.607 1716.5383 1301.2117
B6.PWD-Chr8 f 1580.2 133.5834 1842.8756 1317.5244
B6.PWD-Chr8 m 1488.6667 121.9444 1728.4556 1248.8777
B6.PWD-Chr9 f 1460.0 105.607 1667.6633 1252.3367
B6.PWD-Chr9 m 1838.875 105.607 2046.5383 1631.2117
B6.PWD-ChrX.1 f 1683.0 121.9444 1922.789 1443.211
B6.PWD-ChrX.1 m 1502.125 105.607 1709.7883 1294.4617
B6.PWD-ChrX.2 f 1475.375 105.607 1683.0383 1267.7117
B6.PWD-ChrX.2 m 1432.2857 112.8986 1654.2872 1210.2843
B6.PWD-ChrX.3 f 1125.5 105.607 1333.1633 917.8367
B6.PWD-ChrX.3 m 1031.0 105.607 1238.6633 823.3367
B6.PWD-ChrY f 1445.2857 112.8986 1667.2872 1223.2843
B6.PWD-ChrY m 1260.4286 112.8986 1482.43 1038.4271
B6.PWD-mt f 1238.5 105.607 1446.1633 1030.8367
B6.PWD-mt m 1159.375 105.607 1367.0383 951.7117
C57BL/6J f 1233.125 105.607 1440.7883 1025.4617
C57BL/6J m 1188.375 105.607 1396.0383 980.7117
PWD/PhJ f 853.4286 112.8986 1075.43 631.4271
PWD/PhJ m 901.125 105.607 1108.7883 693.4617


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 1262.75 74.6754 1409.5901 1115.9099
B6.PWD-Chr10.1 both 1421.1875 74.6754 1568.0276 1274.3474
B6.PWD-Chr10.2 both 1162.625 74.6754 1309.4651 1015.7849
B6.PWD-Chr10.3 both 1173.9375 74.6754 1320.7776 1027.0974
B6.PWD-Chr11.1 both 1353.0625 74.6754 1499.9026 1206.2224
B6.PWD-Chr11.2 both 1041.5714 79.8314 1198.5502 884.5927
B6.PWD-Chr11.3 both 1161.1875 74.6754 1308.0276 1014.3474
B6.PWD-Chr12 both 1489.625 74.6754 1636.4651 1342.7849
B6.PWD-Chr13 both 1785.25 74.6754 1932.0901 1638.4099
B6.PWD-Chr14 both 1651.5625 74.6754 1798.4026 1504.7224
B6.PWD-Chr15 both 1400.375 74.6754 1547.2151 1253.5349
B6.PWD-Chr16 both 1602.9375 74.6754 1749.7776 1456.0974
B6.PWD-Chr17 both 959.5833 80.6587 1118.1888 800.9778
B6.PWD-Chr18 both 1395.375 74.6754 1542.2151 1248.5349
B6.PWD-Chr19 both 1233.8304 77.2964 1385.8244 1081.8364
B6.PWD-Chr2 both 2004.625 74.6754 2151.4651 1857.7849
B6.PWD-Chr3 both 1468.1667 101.111 1666.9892 1269.3442
B6.PWD-Chr5 both 1161.5625 74.6754 1308.4026 1014.7224
B6.PWD-Chr6 both 1379.8125 74.6754 1526.6526 1232.9724
B6.PWD-Chr8 both 1534.4333 90.4364 1712.2656 1356.6011
B6.PWD-Chr9 both 1649.4375 74.6754 1796.2776 1502.5974
B6.PWD-ChrX.1 both 1592.5625 80.6587 1751.168 1433.957
B6.PWD-ChrX.2 both 1453.8304 77.2964 1605.8244 1301.8364
B6.PWD-ChrX.3 both 1078.25 74.6754 1225.0901 931.4099
B6.PWD-ChrY both 1352.8571 79.8314 1509.8359 1195.8784
B6.PWD-mt both 1198.9375 74.6754 1345.7776 1052.0974
C57BL/6J both 1210.75 74.6754 1357.5901 1063.9099
PWD/PhJ both 877.2768 77.2964 1029.2708 725.2828




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA