Project measure / variable:   Donahue4   duration_stereotypic

ID, description, units MPD:41332   duration_stereotypic   duration of stereotypic behavior, repetitive activity, 10 min test   [s]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - duration of stereotypic behavior, repetitive activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means118   s 131   s
Median of the strain means118   s 134   s
SD of the strain means± 20.6 ± 23.2
Coefficient of variation (CV)0.176 0.176
Min–max range of strain means77.0   –   161   s 78.5   –   182   s
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 21056.0035 21056.0035 27.8056 < 0.0001
strain 27 174124.3404 6449.0496 8.5163 < 0.0001
sex:strain 27 25530.2715 945.5656 1.2487 0.186
Residuals 371 280942.8763 757.2584


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 106.0 29.0   8 10.2 0.274 63.7, 157.0 -0.56
B6.PWD-Chr1 m 107.0 15.6   8 5.5 0.146 89.5, 137.0 -1.06
B6.PWD-Chr10.1 f 129.0 34.4   8 12.2 0.266 81.1, 173.0 0.55
B6.PWD-Chr10.1 m 151.0 22.9   8 8.11 0.152 121.0, 186.0 0.84
B6.PWD-Chr10.2 f 139.0 14.7   8 5.19 0.106 116.0, 158.0 1.04
B6.PWD-Chr10.2 m 156.0 31.4   8 11.1 0.202 117.0, 196.0 1.06
B6.PWD-Chr10.3 f 130.0 27.2   8 9.63 0.21 91.3, 178.0 0.6
B6.PWD-Chr10.3 m 166.0 34.9   8 12.4 0.21 123.0, 230.0 1.49
B6.PWD-Chr11.1 f 118.0 32.8   8 11.6 0.277 89.0, 172.0 0.02
B6.PWD-Chr11.1 m 137.0 19.1   8 6.75 0.139 110.0, 166.0 0.24
B6.PWD-Chr11.2 f 95.3 31.7   7 12.0 0.333 50.0, 146.0 -1.08
B6.PWD-Chr11.2 m 132.0 41.5   7 15.7 0.315 92.0, 202.0 0.02
B6.PWD-Chr11.3 f 126.0 42.2   8 14.9 0.336 76.6, 177.0 0.41
B6.PWD-Chr11.3 m 134.0 28.9   8 10.2 0.216 101.0, 191.0 0.11
B6.PWD-Chr12 f 161.0 41.1   8 14.5 0.256 122.0, 227.0 2.1
B6.PWD-Chr12 m 182.0 36.3   8 12.8 0.2 123.0, 230.0 2.18
B6.PWD-Chr13 f 95.3 19.7   8 6.95 0.206 65.6, 118.0 -1.08
B6.PWD-Chr13 m 116.0 35.5   8 12.6 0.305 66.2, 170.0 -0.67
B6.PWD-Chr14 f 139.0 24.2   8 8.56 0.175 108.0, 179.0 1.04
B6.PWD-Chr14 m 134.0 19.5   8 6.88 0.145 110.0, 170.0 0.11
B6.PWD-Chr15 f 118.0 21.2   8 7.49 0.179 90.6, 149.0 0.02
B6.PWD-Chr15 m 117.0 25.9   8 9.17 0.221 74.0, 151.0 -0.62
B6.PWD-Chr16 f 122.0 19.7   8 6.97 0.161 84.6, 142.0 0.21
B6.PWD-Chr16 m 146.0 29.6   8 10.5 0.203 81.1, 174.0 0.63
B6.PWD-Chr17 f 124.0 25.0   8 8.85 0.202 76.8, 157.0 0.31
B6.PWD-Chr17 m 97.9 15.0   6 6.14 0.154 78.6, 114.0 -1.45
B6.PWD-Chr18 f 114.0 24.1   8 8.53 0.212 97.0, 170.0 -0.17
B6.PWD-Chr18 m 123.0 25.7   8 9.1 0.21 89.2, 156.0 -0.37
B6.PWD-Chr19 f 86.6 25.7   8 9.1 0.297 60.4, 123.0 -1.5
B6.PWD-Chr19 m 114.0 16.4   7 6.21 0.144 87.7, 133.0 -0.75
B6.PWD-Chr2 f 77.0 27.5   8 9.73 0.358 32.3, 116.0 -1.97
B6.PWD-Chr2 m 80.6 18.0   8 6.36 0.223 50.4, 103.0 -2.19
B6.PWD-Chr3 f 125.0 24.9   8 8.81 0.2 84.7, 164.0 0.36
B6.PWD-Chr3 m 140.0 27.7   3 16.0 0.198 108.0, 160.0 0.37
B6.PWD-Chr5 f 118.0 20.4   8 7.21 0.173 92.9, 153.0 0.02
B6.PWD-Chr5 m 125.0 23.2   8 8.19 0.186 104.0, 175.0 -0.28
B6.PWD-Chr6 f 95.9 14.5   8 5.11 0.151 73.5, 114.0 -1.05
B6.PWD-Chr6 m 138.0 28.2   8 9.96 0.204 109.0, 182.0 0.28
B6.PWD-Chr8 f 104.0 36.2   5 16.2 0.348 60.2, 151.0 -0.66
B6.PWD-Chr8 m 117.0 25.0   6 10.2 0.215 85.8, 154.0 -0.62
B6.PWD-Chr9 f 113.0 30.4   8 10.7 0.269 63.3, 148.0 -0.22
B6.PWD-Chr9 m 136.0 13.0   8 4.58 0.095 119.0, 158.0 0.2
B6.PWD-ChrX.1 f 148.0 31.8   6 13.0 0.214 124.0, 202.0 1.47
B6.PWD-ChrX.1 m 151.0 20.6   8 7.28 0.137 128.0, 186.0 0.84
B6.PWD-ChrX.2 f 107.0 33.0   8 11.7 0.307 68.2, 161.0 -0.51
B6.PWD-ChrX.2 m 131.0 19.4   7 7.34 0.149 106.0, 170.0 -0.02
B6.PWD-ChrX.3 f 107.0 21.5   8 7.61 0.202 91.3, 152.0 -0.51
B6.PWD-ChrX.3 m 150.0 41.1   8 14.5 0.274 108.0, 212.0 0.8
B6.PWD-ChrY f 141.0 20.7   7 7.83 0.147 111.0, 166.0 1.13
B6.PWD-ChrY m 138.0 32.0   7 12.1 0.232 108.0, 202.0 0.28
B6.PWD-mt f 127.0 24.1   8 8.52 0.189 102.0, 174.0 0.45
B6.PWD-mt m 131.0 42.8   8 15.1 0.327 85.0, 208.0 -0.02
C57BL/6J f 145.0 25.7   8 9.09 0.178 102.0, 172.0 1.33
C57BL/6J m 152.0 34.3   8 12.1 0.225 103.0, 202.0 0.89
PWD/PhJ f 81.9 12.1   7 4.56 0.147 66.5, 97.7 -1.73
PWD/PhJ m 78.5 18.7   8 6.59 0.238 54.1, 108.0 -2.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 105.75 9.7292 124.8813 86.6187
B6.PWD-Chr1 m 106.8375 9.7292 125.9688 87.7062
B6.PWD-Chr10.1 f 129.425 9.7292 148.5563 110.2937
B6.PWD-Chr10.1 m 150.875 9.7292 170.0063 131.7437
B6.PWD-Chr10.2 f 138.775 9.7292 157.9063 119.6437
B6.PWD-Chr10.2 m 155.7375 9.7292 174.8688 136.6062
B6.PWD-Chr10.3 f 130.05 9.7292 149.1813 110.9187
B6.PWD-Chr10.3 m 166.125 9.7292 185.2563 146.9937
B6.PWD-Chr11.1 f 118.3375 9.7292 137.4688 99.2062
B6.PWD-Chr11.1 m 137.0625 9.7292 156.1938 117.9312
B6.PWD-Chr11.2 f 95.3143 10.401 115.7665 74.8621
B6.PWD-Chr11.2 m 131.7714 10.401 152.2236 111.3192
B6.PWD-Chr11.3 f 125.6875 9.7292 144.8188 106.5562
B6.PWD-Chr11.3 m 133.5875 9.7292 152.7188 114.4562
B6.PWD-Chr12 f 160.6875 9.7292 179.8188 141.5562
B6.PWD-Chr12 m 181.9875 9.7292 201.1188 162.8562
B6.PWD-Chr13 f 95.275 9.7292 114.4063 76.1437
B6.PWD-Chr13 m 116.4 9.7292 135.5313 97.2687
B6.PWD-Chr14 f 138.575 9.7292 157.7063 119.4437
B6.PWD-Chr14 m 133.8375 9.7292 152.9688 114.7062
B6.PWD-Chr15 f 118.2875 9.7292 137.4188 99.1562
B6.PWD-Chr15 m 117.1625 9.7292 136.2938 98.0312
B6.PWD-Chr16 f 122.3875 9.7292 141.5188 103.2562
B6.PWD-Chr16 m 145.8375 9.7292 164.9688 126.7062
B6.PWD-Chr17 f 124.0625 9.7292 143.1938 104.9312
B6.PWD-Chr17 m 97.9167 11.2343 120.0076 75.8258
B6.PWD-Chr18 f 113.8 9.7292 132.9313 94.6687
B6.PWD-Chr18 m 122.825 9.7292 141.9563 103.6937
B6.PWD-Chr19 f 86.65 9.7292 105.7813 67.5187
B6.PWD-Chr19 m 114.2429 10.401 134.6951 93.7906
B6.PWD-Chr2 f 76.9875 9.7292 96.1188 57.8562
B6.PWD-Chr2 m 80.575 9.7292 99.7063 61.4437
B6.PWD-Chr3 f 124.625 9.7292 143.7563 105.4937
B6.PWD-Chr3 m 139.8 15.8877 171.0413 108.5587
B6.PWD-Chr5 f 117.9375 9.7292 137.0688 98.8062
B6.PWD-Chr5 m 124.825 9.7292 143.9563 105.6937
B6.PWD-Chr6 f 95.8875 9.7292 115.0188 76.7562
B6.PWD-Chr6 m 138.1875 9.7292 157.3188 119.0562
B6.PWD-Chr8 f 104.1 12.3066 128.2994 79.9006
B6.PWD-Chr8 m 116.5667 11.2343 138.6576 94.4758
B6.PWD-Chr9 f 112.9 9.7292 132.0313 93.7687
B6.PWD-Chr9 m 136.375 9.7292 155.5063 117.2437
B6.PWD-ChrX.1 f 148.4 11.2343 170.4909 126.3091
B6.PWD-ChrX.1 m 150.9 9.7292 170.0313 131.7687
B6.PWD-ChrX.2 f 107.475 9.7292 126.6063 88.3437
B6.PWD-ChrX.2 m 130.5286 10.401 150.9808 110.0764
B6.PWD-ChrX.3 f 106.5875 9.7292 125.7188 87.4562
B6.PWD-ChrX.3 m 150.0625 9.7292 169.1938 130.9312
B6.PWD-ChrY f 141.2857 10.401 161.7379 120.8335
B6.PWD-ChrY m 137.9 10.401 158.3522 117.4478
B6.PWD-mt f 127.4375 9.7292 146.5688 108.3062
B6.PWD-mt m 130.825 9.7292 149.9563 111.6937
C57BL/6J f 144.575 9.7292 163.7063 125.4437
C57BL/6J m 152.1625 9.7292 171.2938 133.0312
PWD/PhJ f 81.9286 10.401 102.3808 61.4764
PWD/PhJ m 78.525 9.7292 97.6563 59.3937


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 106.2937 6.8796 119.8216 92.7659
B6.PWD-Chr10.1 both 140.15 6.8796 153.6779 126.6221
B6.PWD-Chr10.2 both 147.2563 6.8796 160.7841 133.7284
B6.PWD-Chr10.3 both 148.0875 6.8796 161.6154 134.5596
B6.PWD-Chr11.1 both 127.7 6.8796 141.2279 114.1721
B6.PWD-Chr11.2 both 113.5429 7.3546 128.0048 99.081
B6.PWD-Chr11.3 both 129.6375 6.8796 143.1654 116.1096
B6.PWD-Chr12 both 171.3375 6.8796 184.8654 157.8096
B6.PWD-Chr13 both 105.8375 6.8796 119.3654 92.3096
B6.PWD-Chr14 both 136.2062 6.8796 149.7341 122.6784
B6.PWD-Chr15 both 117.725 6.8796 131.2529 104.1971
B6.PWD-Chr16 both 134.1125 6.8796 147.6404 120.5846
B6.PWD-Chr17 both 110.9896 7.4308 125.6013 96.3778
B6.PWD-Chr18 both 118.3125 6.8796 131.8404 104.7846
B6.PWD-Chr19 both 100.4464 7.121 114.4491 86.4438
B6.PWD-Chr2 both 78.7813 6.8796 92.3091 65.2534
B6.PWD-Chr3 both 132.2125 9.315 150.5293 113.8957
B6.PWD-Chr5 both 121.3813 6.8796 134.9091 107.8534
B6.PWD-Chr6 both 117.0375 6.8796 130.5654 103.5096
B6.PWD-Chr8 both 110.3333 8.3316 126.7164 93.9503
B6.PWD-Chr9 both 124.6375 6.8796 138.1654 111.1096
B6.PWD-ChrX.1 both 149.65 7.4308 164.2618 135.0382
B6.PWD-ChrX.2 both 119.0018 7.121 133.0045 104.9991
B6.PWD-ChrX.3 both 128.325 6.8796 141.8529 114.7971
B6.PWD-ChrY both 139.5929 7.3546 154.0548 125.131
B6.PWD-mt both 129.1312 6.8796 142.6591 115.6034
C57BL/6J both 148.3687 6.8796 161.8966 134.8409
PWD/PhJ both 80.2268 7.121 94.2295 66.2241




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA