Project measure / variable:   Gupta2   refluxVUR_index

ID, description, units MPD:39215   refluxVUR_index   vesico-ureteric reflux (VUR) index   [score]  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure renal function assay
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  STRAIN COMPARISON PLOT
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Gupta2 - vesico-ureteric reflux (VUR) index



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1.36   score 1.13   score
Median of the strain means0.940   score 0.891   score
SD of the strain means± 1.36 ± 1.10
Coefficient of variation (CV)1.00 0.971
Min–max range of strain means0   –   3.20   score 0   –   3.45   score
Mean sample size per strain12.9   mice 14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.9151 10.9151 5.2284 0.023
strain 9 343.8291 38.2032 18.2995 < 0.0001
sex:strain 9 30.1318 3.348 1.6037 0.1144
Residuals 254 530.2664 2.0877


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 0.0 0.0   13 0.0 0.0 -1.0
BXH10/TyJ m 0.0 0.0   14 0.0 0.0 -1.03
BXH11/TyJ f 3.14 1.21   7 0.459 0.387 1.0, 5.0 1.31
BXH11/TyJ m 1.5 1.64   6 0.671 1.1 0.34
BXH14/TyJ f 1.13 1.73   15 0.446 1.52 -0.17
BXH14/TyJ m 1.25 1.88   16 0.47 1.5 0.11
BXH19/TyJ f 3.13 1.39   23 0.29 0.445 1.31
BXH19/TyJ m 3.45 1.92   11 0.578 0.555 2.12
BXH2/TyJ f 0.75 1.39   8 0.491 1.85 -0.45
BXH2/TyJ m 0.0 0.0   12 0.0 0.0 -1.03
BXH4/TyJ f 3.2 2.11   15 0.545 0.66 1.36
BXH4/TyJ m 1.64 2.16   11 0.65 1.32 0.47
BXH6/TyJ f 0.267 0.799   15 0.206 3.0 -0.8
BXH6/TyJ m 0.533 1.46   15 0.376 2.73 -0.54
BXH7/TyJ f 1.78 2.22   9 0.741 1.25 0.31
BXH7/TyJ m 2.12 2.06   16 0.515 0.97 0.91
BXH8/TyJ f 0.0 0.0   10 0.0 0.0 -1.0
BXH8/TyJ m 0.263 1.15   19 0.263 4.36 -0.79
BXH9/TyJ f 0.167 0.707   18 0.167 4.24 -0.88
BXH9/TyJ m 0.524 1.36   21 0.298 2.6 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 0.0 0.4007 0.7892 -0.7892
BXH10/TyJ m 0.0 0.3862 0.7605 -0.7605
BXH11/TyJ f 3.1429 0.5461 4.2183 2.0674
BXH11/TyJ m 1.5 0.5899 2.6617 0.3383
BXH14/TyJ f 1.1333 0.3731 1.868 0.3986
BXH14/TyJ m 1.25 0.3612 1.9614 0.5386
BXH19/TyJ f 3.1304 0.3013 3.7238 2.5371
BXH19/TyJ m 3.4545 0.4356 4.3125 2.5966
BXH2/TyJ f 0.75 0.5108 1.756 -0.256
BXH2/TyJ m 0.0 0.4171 0.8214 -0.8214
BXH4/TyJ f 3.2 0.3731 3.9347 2.4653
BXH4/TyJ m 1.6364 0.4356 2.4943 0.7784
BXH6/TyJ f 0.2667 0.3731 1.0014 -0.468
BXH6/TyJ m 0.5333 0.3731 1.268 -0.2014
BXH7/TyJ f 1.7778 0.4816 2.7263 0.8293
BXH7/TyJ m 2.125 0.3612 2.8364 1.4136
BXH8/TyJ f 0.0 0.4569 0.8998 -0.8998
BXH8/TyJ m 0.2632 0.3315 0.916 -0.3896
BXH9/TyJ f 0.1667 0.3406 0.8373 -0.504
BXH9/TyJ m 0.5238 0.3153 1.1447 -0.0971


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 0.0 0.2783 0.548 -0.548
BXH11/TyJ both 2.3214 0.4019 3.113 1.5299
BXH14/TyJ both 1.1917 0.2596 1.703 0.6803
BXH19/TyJ both 3.2925 0.2648 3.814 2.7709
BXH2/TyJ both 0.375 0.3297 1.0244 -0.2744
BXH4/TyJ both 2.4182 0.2868 2.9829 1.8534
BXH6/TyJ both 0.4 0.2638 0.9195 -0.1195
BXH7/TyJ both 1.9514 0.301 2.5442 1.3586
BXH8/TyJ both 0.1316 0.2822 0.6874 -0.4243
BXH9/TyJ both 0.3452 0.2321 0.8022 -0.1118




  GWAS USING LINEAR MIXED MODELS