Project measure / variable:   Donahue3   breaks_rearing

ID, description, units MPD:37712   breaks_rearing   number of rearing beam breaks, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - number of rearing beam breaks, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means55.7   n 79.7   n
Median of the strain means57.9   n 82.0   n
SD of the strain means± 16.6 ± 25.8
Coefficient of variation (CV)0.298 0.324
Min–max range of strain means3.25   –   86.0   n 2.25   –   124   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 50328.6392 50328.6392 86.8503 < 0.0001
strain 21 135290.5938 6442.4092 11.1174 < 0.0001
sex:strain 21 22822.0483 1086.7642 1.8754 0.0123
Residuals 308 178482.125 579.4874


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.25 4.43   8 1.57 1.36 -3.16
A/J m 2.25 2.76   8 0.977 1.23 -3.0
B6.A-Chr1 f 31.5 10.5   8 3.72 0.334 16.0, 47.0 -1.46
B6.A-Chr1 m 69.5 22.7   8 8.02 0.326 46.0, 110.0 -0.39
B6.A-Chr10 f 47.5 24.2   8 8.54 0.509 20.0, 95.0 -0.49
B6.A-Chr10 m 99.5 27.4   8 9.69 0.275 55.0, 150.0 0.77
B6.A-Chr11 f 63.9 25.9   8 9.14 0.405 32.0, 120.0 0.49
B6.A-Chr11 m 77.4 28.6   8 10.1 0.37 44.0, 127.0 -0.09
B6.A-Chr12 f 37.4 12.6   8 4.45 0.337 15.0, 53.0 -1.1
B6.A-Chr12 m 53.4 18.3   8 6.48 0.343 28.0, 85.0 -1.02
B6.A-Chr13 f 67.5 16.6   8 5.86 0.246 40.0, 84.0 0.71
B6.A-Chr13 m 104.0 29.4   8 10.4 0.284 68.0, 138.0 0.94
B6.A-Chr14 f 59.1 23.3   8 8.24 0.394 39.0, 108.0 0.2
B6.A-Chr14 m 92.8 31.6   8 11.2 0.34 51.0, 151.0 0.51
B6.A-Chr15 f 72.0 29.2   8 10.3 0.406 33.0, 125.0 0.98
B6.A-Chr15 m 63.9 24.5   8 8.65 0.383 42.0, 114.0 -0.61
B6.A-Chr16 f 50.8 19.0   8 6.73 0.375 29.0, 81.0 -0.29
B6.A-Chr16 m 79.5 24.5   8 8.66 0.308 50.0, 110.0 -0.01
B6.A-Chr17 f 68.2 14.4   8 5.09 0.211 48.0, 87.0 0.75
B6.A-Chr17 m 69.9 17.3   8 6.1 0.247 48.0, 91.0 -0.38
B6.A-Chr18 f 56.1 14.5   8 5.14 0.259 33.0, 86.0 0.02
B6.A-Chr18 m 86.0 18.3   8 6.48 0.213 55.0, 115.0 0.25
B6.A-Chr19 f 65.9 11.6   8 4.1 0.176 52.0, 83.0 0.61
B6.A-Chr19 m 104.0 24.7   8 8.75 0.238 78.0, 144.0 0.94
B6.A-Chr2 f 57.9 13.1   8 4.63 0.227 40.0, 78.0 0.13
B6.A-Chr2 m 82.5 22.9   8 8.1 0.278 56.0, 119.0 0.11
B6.A-Chr3 f 60.6 22.7   8 8.04 0.375 37.0, 104.0 0.29
B6.A-Chr3 m 86.2 29.1   8 10.3 0.338 48.0, 123.0 0.25
B6.A-Chr4 f 49.0 15.0   8 5.29 0.306 28.0, 75.0 -0.4
B6.A-Chr4 m 81.5 32.6   8 11.5 0.4 9.0, 114.0 0.07
B6.A-Chr5 f 71.1 10.4   8 3.67 0.146 56.0, 89.0 0.93
B6.A-Chr5 m 123.0 60.5   8 21.4 0.492 77.0, 234.0 1.68
B6.A-Chr6 f 48.5 18.2   8 6.43 0.375 17.0, 74.0 -0.43
B6.A-Chr6 m 49.0 35.3   8 12.5 0.721 10.0, 121.0 -1.19
B6.A-Chr7 f 56.8 30.7   8 10.9 0.541 25.0, 100.0 0.07
B6.A-Chr7 m 68.2 24.0   8 8.48 0.351 34.0, 97.0 -0.44
B6.A-Chr8 f 56.2 11.7   8 4.15 0.209 34.0, 71.0 0.03
B6.A-Chr8 m 82.9 18.9   8 6.67 0.228 60.0, 124.0 0.13
B6.A-Chr9 f 58.2 17.9   8 6.32 0.307 39.0, 92.0 0.15
B6.A-Chr9 m 70.1 37.9   8 13.4 0.54 38.0, 154.0 -0.37
B6.A-ChrX f 57.9 17.2   8 6.1 0.298 36.0, 82.0 0.13
B6.A-ChrX m 82.8 23.7   8 8.37 0.286 41.0, 125.0 0.12
C57BL/6J f 86.0 24.2   8 8.56 0.282 52.0, 123.0 1.82
C57BL/6J m 124.0 26.9   8 9.53 0.218 87.0, 159.0 1.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.25 8.5109 19.9969 0.0
A/J m 2.25 8.5109 18.9969 0.0
B6.A-Chr1 f 31.5 8.5109 48.2469 14.7531
B6.A-Chr1 m 69.5 8.5109 86.2469 52.7531
B6.A-Chr10 f 47.5 8.5109 64.2469 30.7531
B6.A-Chr10 m 99.5 8.5109 116.2469 82.7531
B6.A-Chr11 f 63.875 8.5109 80.6219 47.1281
B6.A-Chr11 m 77.375 8.5109 94.1219 60.6281
B6.A-Chr12 f 37.375 8.5109 54.1219 20.6281
B6.A-Chr12 m 53.375 8.5109 70.1219 36.6281
B6.A-Chr13 f 67.5 8.5109 84.2469 50.7531
B6.A-Chr13 m 103.625 8.5109 120.3719 86.8781
B6.A-Chr14 f 59.125 8.5109 75.8719 42.3781
B6.A-Chr14 m 92.75 8.5109 109.4969 76.0031
B6.A-Chr15 f 72.0 8.5109 88.7469 55.2531
B6.A-Chr15 m 63.875 8.5109 80.6219 47.1281
B6.A-Chr16 f 50.75 8.5109 67.4969 34.0031
B6.A-Chr16 m 79.5 8.5109 96.2469 62.7531
B6.A-Chr17 f 68.25 8.5109 84.9969 51.5031
B6.A-Chr17 m 69.875 8.5109 86.6219 53.1281
B6.A-Chr18 f 56.125 8.5109 72.8719 39.3781
B6.A-Chr18 m 86.0 8.5109 102.7469 69.2531
B6.A-Chr19 f 65.875 8.5109 82.6219 49.1281
B6.A-Chr19 m 103.875 8.5109 120.6219 87.1281
B6.A-Chr2 f 57.875 8.5109 74.6219 41.1281
B6.A-Chr2 m 82.5 8.5109 99.2469 65.7531
B6.A-Chr3 f 60.625 8.5109 77.3719 43.8781
B6.A-Chr3 m 86.25 8.5109 102.9969 69.5031
B6.A-Chr4 f 49.0 8.5109 65.7469 32.2531
B6.A-Chr4 m 81.5 8.5109 98.2469 64.7531
B6.A-Chr5 f 71.125 8.5109 87.8719 54.3781
B6.A-Chr5 m 122.875 8.5109 139.6219 106.1281
B6.A-Chr6 f 48.5 8.5109 65.2469 31.7531
B6.A-Chr6 m 49.0 8.5109 65.7469 32.2531
B6.A-Chr7 f 56.75 8.5109 73.4969 40.0031
B6.A-Chr7 m 68.25 8.5109 84.9969 51.5031
B6.A-Chr8 f 56.25 8.5109 72.9969 39.5031
B6.A-Chr8 m 82.875 8.5109 99.6219 66.1281
B6.A-Chr9 f 58.25 8.5109 74.9969 41.5031
B6.A-Chr9 m 70.125 8.5109 86.8719 53.3781
B6.A-ChrX f 57.875 8.5109 74.6219 41.1281
B6.A-ChrX m 82.75 8.5109 99.4969 66.0031
C57BL/6J f 86.0 8.5109 102.7469 69.2531
C57BL/6J m 123.875 8.5109 140.6219 107.1281


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.75 6.0181 14.5919 0.0
B6.A-Chr1 both 50.5 6.0181 62.3419 38.6581
B6.A-Chr10 both 73.5 6.0181 85.3419 61.6581
B6.A-Chr11 both 70.625 6.0181 82.4669 58.7831
B6.A-Chr12 both 45.375 6.0181 57.2169 33.5331
B6.A-Chr13 both 85.5625 6.0181 97.4044 73.7206
B6.A-Chr14 both 75.9375 6.0181 87.7794 64.0956
B6.A-Chr15 both 67.9375 6.0181 79.7794 56.0956
B6.A-Chr16 both 65.125 6.0181 76.9669 53.2831
B6.A-Chr17 both 69.0625 6.0181 80.9044 57.2206
B6.A-Chr18 both 71.0625 6.0181 82.9044 59.2206
B6.A-Chr19 both 84.875 6.0181 96.7169 73.0331
B6.A-Chr2 both 70.1875 6.0181 82.0294 58.3456
B6.A-Chr3 both 73.4375 6.0181 85.2794 61.5956
B6.A-Chr4 both 65.25 6.0181 77.0919 53.4081
B6.A-Chr5 both 97.0 6.0181 108.8419 85.1581
B6.A-Chr6 both 48.75 6.0181 60.5919 36.9081
B6.A-Chr7 both 62.5 6.0181 74.3419 50.6581
B6.A-Chr8 both 69.5625 6.0181 81.4044 57.7206
B6.A-Chr9 both 64.1875 6.0181 76.0294 52.3456
B6.A-ChrX both 70.3125 6.0181 82.1544 58.4706
C57BL/6J both 104.9375 6.0181 116.7794 93.0956




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA