Project measure / variable:   Donahue3   distance_total

ID, description, units MPD:37708   distance_total   total distance traveled, 10 min test   [cm]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - total distance traveled, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means1605   cm 1704   cm
Median of the strain means1618   cm 1780   cm
SD of the strain means± 435 ± 431
Coefficient of variation (CV)0.271 0.253
Min–max range of strain means145   –   2129   cm 123   –   2277   cm
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 859125.2841 859125.2841 7.3561 0.0071
strain 21 59182398.2159 2818209.4389 24.1303 < 0.0001
sex:strain 21 3761096.8409 179099.8496 1.5335 0.0648
Residuals 308 35971689.25 116791.1989


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 145.0 123.0   8 43.6 0.852 3.0, 301.0 -3.36
A/J m 123.0 116.0   8 41.1 0.942 39.0, 386.0 -3.67
B6.A-Chr1 f 1296.0 346.0   8 122.0 0.267 628.0, 1720.0 -0.71
B6.A-Chr1 m 1694.0 212.0   8 75.1 0.125 1267.0, 1896.0 -0.02
B6.A-Chr10 f 1065.0 228.0   8 80.8 0.215 884.0, 1538.0 -1.24
B6.A-Chr10 m 1207.0 174.0   8 61.4 0.144 985.0, 1492.0 -1.15
B6.A-Chr11 f 1921.0 381.0   8 135.0 0.198 1509.0, 2531.0 0.73
B6.A-Chr11 m 1779.0 244.0   8 86.4 0.137 1350.0, 2102.0 0.17
B6.A-Chr12 f 1447.0 330.0   8 117.0 0.228 1041.0, 1819.0 -0.36
B6.A-Chr12 m 1491.0 286.0   8 101.0 0.192 1145.0, 1949.0 -0.49
B6.A-Chr13 f 1422.0 265.0   8 93.6 0.186 965.0, 1839.0 -0.42
B6.A-Chr13 m 1853.0 383.0   8 135.0 0.207 1463.0, 2530.0 0.35
B6.A-Chr14 f 1803.0 470.0   8 166.0 0.261 1276.0, 2766.0 0.46
B6.A-Chr14 m 1902.0 288.0   8 102.0 0.151 1515.0, 2351.0 0.46
B6.A-Chr15 f 1833.0 355.0   8 125.0 0.194 1389.0, 2386.0 0.52
B6.A-Chr15 m 1584.0 343.0   8 121.0 0.217 1216.0, 2304.0 -0.28
B6.A-Chr16 f 1716.0 233.0   8 82.4 0.136 1308.0, 1962.0 0.26
B6.A-Chr16 m 1782.0 331.0   8 117.0 0.186 1351.0, 2281.0 0.18
B6.A-Chr17 f 2072.0 471.0   8 166.0 0.227 1647.0, 3126.0 1.07
B6.A-Chr17 m 1880.0 313.0   8 111.0 0.166 1539.0, 2534.0 0.41
B6.A-Chr18 f 1464.0 368.0   8 130.0 0.251 1034.0, 2147.0 -0.32
B6.A-Chr18 m 1614.0 326.0   8 115.0 0.202 1129.0, 2053.0 -0.21
B6.A-Chr19 f 1966.0 316.0   8 112.0 0.161 1664.0, 2551.0 0.83
B6.A-Chr19 m 2277.0 493.0   8 174.0 0.216 1779.0, 2991.0 1.33
B6.A-Chr2 f 1849.0 410.0   8 145.0 0.221 1543.0, 2774.0 0.56
B6.A-Chr2 m 2112.0 323.0   8 114.0 0.153 1766.0, 2493.0 0.95
B6.A-Chr3 f 1520.0 297.0   8 105.0 0.196 1080.0, 1910.0 -0.2
B6.A-Chr3 m 1590.0 378.0   8 134.0 0.238 927.0, 2049.0 -0.26
B6.A-Chr4 f 1455.0 486.0   8 172.0 0.334 1016.0, 2513.0 -0.34
B6.A-Chr4 m 1567.0 309.0   8 109.0 0.197 1028.0, 1905.0 -0.32
B6.A-Chr5 f 2051.0 438.0   8 155.0 0.214 1698.0, 3039.0 1.03
B6.A-Chr5 m 2195.0 522.0   8 185.0 0.238 1470.0, 3090.0 1.14
B6.A-Chr6 f 1520.0 285.0   8 101.0 0.187 1102.0, 1998.0 -0.2
B6.A-Chr6 m 1504.0 123.0   8 43.5 0.0818 1305.0, 1671.0 -0.46
B6.A-Chr7 f 2129.0 476.0   8 168.0 0.223 1573.0, 3001.0 1.2
B6.A-Chr7 m 2018.0 489.0   8 173.0 0.242 1579.0, 3043.0 0.73
B6.A-Chr8 f 1362.0 290.0   8 103.0 0.213 926.0, 1682.0 -0.56
B6.A-Chr8 m 1808.0 293.0   8 104.0 0.162 1288.0, 2240.0 0.24
B6.A-Chr9 f 2012.0 216.0   8 76.5 0.107 1726.0, 2333.0 0.94
B6.A-Chr9 m 1762.0 434.0   8 153.0 0.246 1200.0, 2711.0 0.13
B6.A-ChrX f 1516.0 259.0   8 91.6 0.171 1158.0, 1934.0 -0.2
B6.A-ChrX m 1898.0 270.0   8 95.5 0.142 1534.0, 2456.0 0.45
C57BL/6J f 1746.0 370.0   8 131.0 0.212 1207.0, 2500.0 0.32
C57BL/6J m 1848.0 305.0   8 108.0 0.165 1539.0, 2349.0 0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 144.875 120.8259 382.6237 0.0
A/J m 123.375 120.8259 361.1237 0.0
B6.A-Chr1 f 1296.25 120.8259 1533.9987 1058.5013
B6.A-Chr1 m 1693.75 120.8259 1931.4987 1456.0013
B6.A-Chr10 f 1064.875 120.8259 1302.6237 827.1263
B6.A-Chr10 m 1206.625 120.8259 1444.3737 968.8763
B6.A-Chr11 f 1920.875 120.8259 2158.6237 1683.1263
B6.A-Chr11 m 1779.375 120.8259 2017.1237 1541.6263
B6.A-Chr12 f 1447.125 120.8259 1684.8737 1209.3763
B6.A-Chr12 m 1490.75 120.8259 1728.4987 1253.0013
B6.A-Chr13 f 1422.25 120.8259 1659.9987 1184.5013
B6.A-Chr13 m 1852.625 120.8259 2090.3737 1614.8763
B6.A-Chr14 f 1803.25 120.8259 2040.9987 1565.5013
B6.A-Chr14 m 1902.25 120.8259 2139.9987 1664.5013
B6.A-Chr15 f 1833.125 120.8259 2070.8737 1595.3763
B6.A-Chr15 m 1583.625 120.8259 1821.3737 1345.8763
B6.A-Chr16 f 1715.5 120.8259 1953.2487 1477.7513
B6.A-Chr16 m 1781.625 120.8259 2019.3737 1543.8763
B6.A-Chr17 f 2072.5 120.8259 2310.2487 1834.7513
B6.A-Chr17 m 1879.875 120.8259 2117.6237 1642.1263
B6.A-Chr18 f 1464.0 120.8259 1701.7487 1226.2513
B6.A-Chr18 m 1614.0 120.8259 1851.7487 1376.2513
B6.A-Chr19 f 1966.25 120.8259 2203.9987 1728.5013
B6.A-Chr19 m 2276.875 120.8259 2514.6237 2039.1263
B6.A-Chr2 f 1848.875 120.8259 2086.6237 1611.1263
B6.A-Chr2 m 2111.75 120.8259 2349.4987 1874.0013
B6.A-Chr3 f 1519.5 120.8259 1757.2487 1281.7513
B6.A-Chr3 m 1589.625 120.8259 1827.3737 1351.8763
B6.A-Chr4 f 1455.0 120.8259 1692.7487 1217.2513
B6.A-Chr4 m 1567.25 120.8259 1804.9987 1329.5013
B6.A-Chr5 f 2051.25 120.8259 2288.9987 1813.5013
B6.A-Chr5 m 2195.25 120.8259 2432.9987 1957.5013
B6.A-Chr6 f 1520.5 120.8259 1758.2487 1282.7513
B6.A-Chr6 m 1503.625 120.8259 1741.3737 1265.8763
B6.A-Chr7 f 2128.875 120.8259 2366.6237 1891.1263
B6.A-Chr7 m 2017.625 120.8259 2255.3737 1779.8763
B6.A-Chr8 f 1362.5 120.8259 1600.2487 1124.7513
B6.A-Chr8 m 1808.125 120.8259 2045.8737 1570.3763
B6.A-Chr9 f 2011.875 120.8259 2249.6237 1774.1263
B6.A-Chr9 m 1761.875 120.8259 1999.6237 1524.1263
B6.A-ChrX f 1516.5 120.8259 1754.2487 1278.7513
B6.A-ChrX m 1897.75 120.8259 2135.4987 1660.0013
C57BL/6J f 1745.625 120.8259 1983.3737 1507.8763
C57BL/6J m 1847.5 120.8259 2085.2487 1609.7513


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 134.125 85.4368 302.2387 0.0
B6.A-Chr1 both 1495.0 85.4368 1663.1137 1326.8863
B6.A-Chr10 both 1135.75 85.4368 1303.8637 967.6363
B6.A-Chr11 both 1850.125 85.4368 2018.2387 1682.0113
B6.A-Chr12 both 1468.9375 85.4368 1637.0512 1300.8238
B6.A-Chr13 both 1637.4375 85.4368 1805.5512 1469.3238
B6.A-Chr14 both 1852.75 85.4368 2020.8637 1684.6363
B6.A-Chr15 both 1708.375 85.4368 1876.4887 1540.2613
B6.A-Chr16 both 1748.5625 85.4368 1916.6762 1580.4488
B6.A-Chr17 both 1976.1875 85.4368 2144.3012 1808.0738
B6.A-Chr18 both 1539.0 85.4368 1707.1137 1370.8863
B6.A-Chr19 both 2121.5625 85.4368 2289.6762 1953.4488
B6.A-Chr2 both 1980.3125 85.4368 2148.4262 1812.1988
B6.A-Chr3 both 1554.5625 85.4368 1722.6762 1386.4488
B6.A-Chr4 both 1511.125 85.4368 1679.2387 1343.0113
B6.A-Chr5 both 2123.25 85.4368 2291.3637 1955.1363
B6.A-Chr6 both 1512.0625 85.4368 1680.1762 1343.9488
B6.A-Chr7 both 2073.25 85.4368 2241.3637 1905.1363
B6.A-Chr8 both 1585.3125 85.4368 1753.4262 1417.1988
B6.A-Chr9 both 1886.875 85.4368 2054.9887 1718.7613
B6.A-ChrX both 1707.125 85.4368 1875.2387 1539.0113
C57BL/6J both 1796.5625 85.4368 1964.6762 1628.4488




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA