Project measure / variable:   Koide3   defecation

ID, description, units MPD:35915   defecation   number of fecal boli, 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - number of fecal boli, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means3.24   n 3.84   n
Median of the strain means2.60   n 2.85   n
SD of the strain means± 2.85 ± 2.77
Coefficient of variation (CV)0.878 0.721
Min–max range of strain means0.300   –   9.90   n 0.200   –   8.60   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 21.301 21.301 2.7886 0.0964
strain 11 1638.7365 148.976 19.5032 < 0.0001
sex:strain 11 94.4115 8.5829 1.1236 0.3439
Residuals 216 1649.925 7.6385


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 0.3 0.949   10 0.3 3.16 -1.03
BFM/2Ms m 1.4 3.1   10 0.98 2.21 -0.88
BLG2/Ms f 3.0 2.0   10 0.632 0.667 -0.08
BLG2/Ms m 6.8 2.39   10 0.757 0.352 2.0, 10.0 1.07
C57BL/6J f 0.9 1.45   10 0.458 1.61 -0.82
C57BL/6J m 0.2 0.632   10 0.2 3.16 -1.32
CAST/EiJ f 3.6 2.72   10 0.859 0.755 0.13
CAST/EiJ m 2.8 3.29   10 1.04 1.18 -0.38
CHD/Ms f 2.2 2.57   10 0.814 1.17 -0.37
CHD/Ms m 2.1 2.77   10 0.875 1.32 -0.63
HMI/Ms f 0.9 1.2   10 0.379 1.33 -0.82
HMI/Ms m 1.9 1.97   10 0.623 1.04 -0.7
JF1/MsJ f 6.5 2.42   10 0.764 0.372 2.0, 10.0 1.14
JF1/MsJ m 7.65 3.07   10 0.972 0.402 2.0, 12.5 1.38
KJR/Ms f 9.9 3.21   10 1.02 0.325 6.0, 15.0 2.34
KJR/Ms m 8.6 5.5   10 1.74 0.64 1.72
MSM/MsJ f 3.6 1.96   10 0.618 0.543 0.13
MSM/MsJ m 4.2 3.43   10 1.08 0.816 0.13
NJL/Ms f 5.4 3.6   10 1.14 0.666 0.76
NJL/Ms m 6.0 4.16   10 1.32 0.694 0.78
PGN2/Ms f 0.6 1.58   10 0.499 2.63 -0.93
PGN2/Ms m 1.5 1.51   10 0.477 1.01 -0.85
SWN/Ms f 2.0 2.75   10 0.869 1.37 -0.44
SWN/Ms m 2.9 2.96   10 0.936 1.02 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 0.3 0.874 2.0226 0.0
BFM/2Ms m 1.4 0.874 3.1226 0.0
BLG2/Ms f 3.0 0.874 4.7226 1.2774
BLG2/Ms m 6.8 0.874 8.5226 5.0774
C57BL/6J f 0.9 0.874 2.6226 0.0
C57BL/6J m 0.2 0.874 1.9226 0.0
CAST/EiJ f 3.6 0.874 5.3226 1.8774
CAST/EiJ m 2.8 0.874 4.5226 1.0774
CHD/Ms f 2.2 0.874 3.9226 0.4774
CHD/Ms m 2.1 0.874 3.8226 0.3774
HMI/Ms f 0.9 0.874 2.6226 0.0
HMI/Ms m 1.9 0.874 3.6226 0.1774
JF1/MsJ f 6.5 0.874 8.2226 4.7774
JF1/MsJ m 7.65 0.874 9.3726 5.9274
KJR/Ms f 9.9 0.874 11.6226 8.1774
KJR/Ms m 8.6 0.874 10.3226 6.8774
MSM/MsJ f 3.6 0.874 5.3226 1.8774
MSM/MsJ m 4.2 0.874 5.9226 2.4774
NJL/Ms f 5.4 0.874 7.1226 3.6774
NJL/Ms m 6.0 0.874 7.7226 4.2774
PGN2/Ms f 0.6 0.874 2.3226 0.0
PGN2/Ms m 1.5 0.874 3.2226 0.0
SWN/Ms f 2.0 0.874 3.7226 0.2774
SWN/Ms m 2.9 0.874 4.6226 1.1774


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 0.85 0.618 2.0681 0.0
BLG2/Ms both 4.9 0.618 6.1181 3.6819
C57BL/6J both 0.55 0.618 1.7681 0.0
CAST/EiJ both 3.2 0.618 4.4181 1.9819
CHD/Ms both 2.15 0.618 3.3681 0.9319
HMI/Ms both 1.4 0.618 2.6181 0.1819
JF1/MsJ both 7.075 0.618 8.2931 5.8569
KJR/Ms both 9.25 0.618 10.4681 8.0319
MSM/MsJ both 3.9 0.618 5.1181 2.6819
NJL/Ms both 5.7 0.618 6.9181 4.4819
PGN2/Ms both 1.05 0.618 2.2681 0.0
SWN/Ms both 2.45 0.618 3.6681 1.2319




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA