Project measure / variable:   Koide3   sniffing

ID, description, units MPD:35907   sniffing   sniffing, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - sniffing, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means109   n 109   n
Median of the strain means111   n 108   n
SD of the strain means± 7.68 ± 6.80
Coefficient of variation (CV)0.0706 0.0622
Min–max range of strain means94.1   –   118   n 99.3   –   119   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.7042 7.7042 0.0936 0.7599
strain 11 10131.3458 921.0314 11.1955 < 0.0001
sex:strain 11 1335.3458 121.3951 1.4756 0.1421
Residuals 216 17769.9 82.2681


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 113.0 9.99   10 3.16 0.0886 85.0, 119.0 0.55
BFM/2Ms m 115.0 5.62   10 1.78 0.0487 106.0, 120.0 0.84
BLG2/Ms f 116.0 4.02   10 1.27 0.0347 107.0, 119.0 0.94
BLG2/Ms m 117.0 3.13   10 0.991 0.0269 110.0, 120.0 1.14
C57BL/6J f 118.0 1.87   10 0.593 0.0159 115.0, 120.0 1.2
C57BL/6J m 119.0 0.816   10 0.258 0.00686 117.0, 120.0 1.43
CAST/EiJ f 117.0 1.9   10 0.6 0.0162 114.0, 120.0 1.07
CAST/EiJ m 118.0 1.89   10 0.597 0.016 115.0, 120.0 1.28
CHD/Ms f 94.1 17.1   10 5.4 0.182 66.0, 117.0 -1.91
CHD/Ms m 99.3 16.7   10 5.3 0.169 59.0, 114.0 -1.47
HMI/Ms f 111.0 10.6   10 3.36 0.0955 85.0, 120.0 0.29
HMI/Ms m 107.0 5.34   10 1.69 0.0501 99.0, 113.0 -0.33
JF1/MsJ f 108.0 10.4   10 3.29 0.0959 84.0, 118.0 -0.1
JF1/MsJ m 102.0 8.31   10 2.63 0.0815 89.0, 115.0 -1.07
KJR/Ms f 107.0 6.07   10 1.92 0.0568 95.0, 115.0 -0.23
KJR/Ms m 110.0 7.56   10 2.39 0.0687 93.0, 120.0 0.11
MSM/MsJ f 98.4 16.5   10 5.21 0.168 65.0, 116.0 -1.35
MSM/MsJ m 103.0 7.62   10 2.41 0.0739 88.0, 113.0 -0.92
NJL/Ms f 99.9 8.6   10 2.72 0.086 86.0, 112.0 -1.16
NJL/Ms m 107.0 10.1   10 3.21 0.0946 84.0, 118.0 -0.33
PGN2/Ms f 112.0 3.41   10 1.08 0.0303 108.0, 117.0 0.42
PGN2/Ms m 103.0 11.4   10 3.61 0.11 80.0, 117.0 -0.92
SWN/Ms f 111.0 9.12   10 2.88 0.0821 90.0, 119.0 0.29
SWN/Ms m 111.0 9.41   10 2.97 0.085 89.0, 119.0 0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 112.7 2.8682 118.3533 107.0467
BFM/2Ms m 115.3 2.8682 120.9533 109.6467
BLG2/Ms f 115.8 2.8682 121.4533 110.1467
BLG2/Ms m 116.6 2.8682 122.2533 110.9467
C57BL/6J f 117.8 2.8682 123.4533 112.1467
C57BL/6J m 119.0 2.8682 124.6533 113.3467
CAST/EiJ f 117.4 2.8682 123.0533 111.7467
CAST/EiJ m 117.7 2.8682 123.3533 112.0467
CHD/Ms f 94.1 2.8682 99.7533 88.4467
CHD/Ms m 99.3 2.8682 104.9533 93.6467
HMI/Ms f 111.4 2.8682 117.0533 105.7467
HMI/Ms m 106.6 2.8682 112.2533 100.9467
JF1/MsJ f 108.5 2.8682 114.1533 102.8467
JF1/MsJ m 102.0 2.8682 107.6533 96.3467
KJR/Ms f 107.0 2.8682 112.6533 101.3467
KJR/Ms m 110.0 2.8682 115.6533 104.3467
MSM/MsJ f 98.4 2.8682 104.0533 92.7467
MSM/MsJ m 103.1 2.8682 108.7533 97.4467
NJL/Ms f 99.9 2.8682 105.5533 94.2467
NJL/Ms m 107.2 2.8682 112.8533 101.5467
PGN2/Ms f 112.4 2.8682 118.0533 106.7467
PGN2/Ms m 103.3 2.8682 108.9533 97.6467
SWN/Ms f 111.1 2.8682 116.7533 105.4467
SWN/Ms m 110.7 2.8682 116.3533 105.0467


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 114.0 2.0282 117.9975 110.0025
BLG2/Ms both 116.2 2.0282 120.1975 112.2025
C57BL/6J both 118.4 2.0282 122.3975 114.4025
CAST/EiJ both 117.55 2.0282 121.5475 113.5525
CHD/Ms both 96.7 2.0282 100.6975 92.7025
HMI/Ms both 109.0 2.0282 112.9975 105.0025
JF1/MsJ both 105.25 2.0282 109.2475 101.2525
KJR/Ms both 108.5 2.0282 112.4975 104.5025
MSM/MsJ both 100.75 2.0282 104.7475 96.7525
NJL/Ms both 103.55 2.0282 107.5475 99.5525
PGN2/Ms both 107.85 2.0282 111.8475 103.8525
SWN/Ms both 110.9 2.0282 114.8975 106.9025




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA