Project measure / variable:   Koide3   leaning

ID, description, units MPD:35904   leaning   leaning activity while rearing, presence or absence of activity in 5s intervals over 10 min test   [n]  
Data set, strains Koide3   wild-derived Mishima   12 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Koide3 - leaning activity while rearing, presence or absence of activity in 5s intervals over 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means59.8   n 57.3   n
Median of the strain means64.0   n 61.4   n
SD of the strain means± 19.5 ± 19.7
Coefficient of variation (CV)0.326 0.344
Min–max range of strain means21.7   –   87.4   n 20.2   –   92.5   n
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 370.0167 370.0167 1.6256 0.2037
strain 11 80802.1333 7345.6485 32.2721 < 0.0001
sex:strain 11 3721.7833 338.3439 1.4865 0.1379
Residuals 216 49165.0 227.6157


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BFM/2Ms f 79.7 15.6   10 4.94 0.196 55.0, 105.0 1.02
BFM/2Ms m 65.7 15.3   10 4.83 0.232 41.0, 85.0 0.42
BLG2/Ms f 65.4 9.99   10 3.16 0.153 53.0, 82.0 0.29
BLG2/Ms m 70.6 12.8   10 4.04 0.181 52.0, 86.0 0.67
C57BL/6J f 45.4 13.8   10 4.38 0.305 29.0, 68.0 -0.74
C57BL/6J m 43.7 5.76   10 1.82 0.132 36.0, 55.0 -0.69
CAST/EiJ f 70.3 24.4   10 7.71 0.347 19.0, 92.0 0.54
CAST/EiJ m 57.3 21.6   10 6.84 0.377 22.0, 98.0 0.0
CHD/Ms f 21.7 9.57   10 3.03 0.441 7.0, 38.0 -1.96
CHD/Ms m 29.3 14.4   10 4.56 0.492 8.0, 58.0 -1.42
HMI/Ms f 73.0 20.0   10 6.33 0.274 34.0, 90.0 0.68
HMI/Ms m 66.1 14.1   10 4.46 0.213 42.0, 85.0 0.45
JF1/MsJ f 33.9 21.1   10 6.68 0.624 7.0, 75.0 -1.33
JF1/MsJ m 20.2 11.3   10 3.56 0.558 4.0, 35.0 -1.88
KJR/Ms f 87.4 6.83   10 2.16 0.0782 78.0, 99.0 1.42
KJR/Ms m 92.5 11.5   10 3.64 0.124 73.0, 111.0 1.78
MSM/MsJ f 46.1 12.4   10 3.91 0.268 28.0, 67.0 -0.7
MSM/MsJ m 52.4 14.4   10 4.55 0.275 23.0, 75.0 -0.25
NJL/Ms f 62.5 15.4   10 4.87 0.247 44.0, 93.0 0.14
NJL/Ms m 65.4 15.5   10 4.91 0.237 42.0, 91.0 0.41
PGN2/Ms f 59.2 15.4   10 4.86 0.26 40.0, 87.0 -0.03
PGN2/Ms m 51.7 15.7   10 4.97 0.304 30.0, 78.0 -0.29
SWN/Ms f 73.1 11.6   10 3.66 0.158 54.0, 91.0 0.68
SWN/Ms m 73.0 18.1   10 5.72 0.248 50.0, 97.0 0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms f 79.7 4.7709 89.1035 70.2965
BFM/2Ms m 65.7 4.7709 75.1035 56.2965
BLG2/Ms f 65.4 4.7709 74.8035 55.9965
BLG2/Ms m 70.6 4.7709 80.0035 61.1965
C57BL/6J f 45.4 4.7709 54.8035 35.9965
C57BL/6J m 43.7 4.7709 53.1035 34.2965
CAST/EiJ f 70.3 4.7709 79.7035 60.8965
CAST/EiJ m 57.3 4.7709 66.7035 47.8965
CHD/Ms f 21.7 4.7709 31.1035 12.2965
CHD/Ms m 29.3 4.7709 38.7035 19.8965
HMI/Ms f 73.0 4.7709 82.4035 63.5965
HMI/Ms m 66.1 4.7709 75.5035 56.6965
JF1/MsJ f 33.9 4.7709 43.3035 24.4965
JF1/MsJ m 20.2 4.7709 29.6035 10.7965
KJR/Ms f 87.4 4.7709 96.8035 77.9965
KJR/Ms m 92.5 4.7709 101.9035 83.0965
MSM/MsJ f 46.1 4.7709 55.5035 36.6965
MSM/MsJ m 52.4 4.7709 61.8035 42.9965
NJL/Ms f 62.5 4.7709 71.9035 53.0965
NJL/Ms m 65.4 4.7709 74.8035 55.9965
PGN2/Ms f 59.2 4.7709 68.6035 49.7965
PGN2/Ms m 51.7 4.7709 61.1035 42.2965
SWN/Ms f 73.1 4.7709 82.5035 63.6965
SWN/Ms m 73.0 4.7709 82.4035 63.5965


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BFM/2Ms both 72.7 3.3735 79.3493 66.0507
BLG2/Ms both 68.0 3.3735 74.6493 61.3507
C57BL/6J both 44.55 3.3735 51.1993 37.9007
CAST/EiJ both 63.8 3.3735 70.4493 57.1507
CHD/Ms both 25.5 3.3735 32.1493 18.8507
HMI/Ms both 69.55 3.3735 76.1993 62.9007
JF1/MsJ both 27.05 3.3735 33.6993 20.4007
KJR/Ms both 89.95 3.3735 96.5993 83.3007
MSM/MsJ both 49.25 3.3735 55.8993 42.6007
NJL/Ms both 63.95 3.3735 70.5993 57.3007
PGN2/Ms both 55.45 3.3735 62.0993 48.8007
SWN/Ms both 73.05 3.3735 79.6993 66.4007




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA