Project measure / variable:   Schonfeld1   pct_fat

ID, description, units MPD:32351   pct_fat   percent fat, head excluded   [%]  
Data set, strains Schonfeld1   inbred   10 strains     sex: both     age: 9-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Schonfeld1 - percent fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains9 strains
Mean of the strain means14.7   % 14.9   %
Median of the strain means13.8   % 13.7   %
SD of the strain means± 2.62 ± 2.93
Coefficient of variation (CV)0.179 0.197
Min–max range of strain means12.1   –   19.5   % 12.2   –   20.9   %
Mean sample size per strain6.2   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.7611 5.7611 1.0934 0.2986
strain 8 330.522 41.3153 7.8409 < 0.0001
sex:strain 8 224.234 28.0292 5.3195 < 0.0001
Residuals 87 458.42 5.2692


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ f 14.5 1.68   10 0.532 0.116 12.5, 17.5 -0.06
129X1/SvJ m 13.7 0.769   5 0.344 0.0561 12.6, 14.6 -0.42
AKR/J f 19.5 2.89   5 1.29 0.148 17.5, 24.3 1.85
BALB/cByJ f 16.4 3.86   10 1.22 0.235 12.6, 25.0 0.66
BALB/cByJ m 12.2 1.42   5 0.634 0.116 10.4, 14.1 -0.93
C3H/HeJ f 12.5 1.61   5 0.719 0.129 10.5, 14.8 -0.82
C3H/HeJ m 14.3 1.02   5 0.457 0.0715 13.0, 15.3 -0.21
C57BL/6ByJ f 13.0 0.883   5 0.395 0.0679 12.0, 14.2 -0.63
C57BL/6ByJ m 13.7 0.555   5 0.248 0.0406 12.7, 14.1 -0.42
C57BL/6J f 15.4 2.63   10 0.83 0.17 11.5, 19.4 0.28
C57BL/6J m 13.5 2.17   5 0.969 0.161 12.1, 17.2 -0.48
DBA/1LacJ f 12.1 1.44   5 0.646 0.12 10.4, 14.0 -0.98
DBA/1LacJ m 18.5 4.54   5 2.03 0.246 14.0, 24.9 1.22
NZB/BlNJ f 12.3 1.13   5 0.505 0.092 11.2, 13.9 -0.9
NZB/BlNJ m 15.3 2.09   5 0.937 0.137 13.2, 18.4 0.13
PL/J f 18.1 1.85   5 0.829 0.103 15.8, 19.9 1.31
PL/J m 20.9 3.15   5 1.41 0.151 17.8, 25.8 2.04
SWR/J f 12.8 1.41   5 0.629 0.11 11.5, 15.0 -0.71
SWR/J m 12.2 1.89   5 0.846 0.155 10.9, 15.5 -0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ f 14.5 0.7259 15.9428 13.0572
129X1/SvJ m 13.72 1.0266 15.7604 11.6796
BALB/cByJ f 16.42 0.7259 17.8628 14.9772
BALB/cByJ m 12.18 1.0266 14.2204 10.1396
C3H/HeJ f 12.46 1.0266 14.5004 10.4196
C3H/HeJ m 14.3 1.0266 16.3404 12.2596
C57BL/6ByJ f 13.0 1.0266 15.0404 10.9596
C57BL/6ByJ m 13.66 1.0266 15.7004 11.6196
C57BL/6J f 15.4 0.7259 16.8428 13.9572
C57BL/6J m 13.48 1.0266 15.5204 11.4396
DBA/1LacJ f 12.08 1.0266 14.1204 10.0396
DBA/1LacJ m 18.48 1.0266 20.5204 16.4396
NZB/BlNJ f 12.26 1.0266 14.3004 10.2196
NZB/BlNJ m 15.34 1.0266 17.3804 13.2996
PL/J f 18.08 1.0266 20.1204 16.0396
PL/J m 20.88 1.0266 22.9204 18.8396
SWR/J f 12.76 1.0266 14.8004 10.7196
SWR/J m 12.18 1.0266 14.2204 10.1396


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ both 14.11 0.6286 15.3595 12.8605
BALB/cByJ both 14.3 0.6286 15.5495 13.0505
C3H/HeJ both 13.38 0.7259 14.8228 11.9372
C57BL/6ByJ both 13.33 0.7259 14.7728 11.8872
C57BL/6J both 14.44 0.6286 15.6895 13.1905
DBA/1LacJ both 15.28 0.7259 16.7228 13.8372
NZB/BlNJ both 13.8 0.7259 15.2428 12.3572
PL/J both 19.48 0.7259 20.9228 18.0372
SWR/J both 12.47 0.7259 13.9128 11.0272




  GWAS USING LINEAR MIXED MODELS