Project measure / variable:   Schonfeld1   PL

ID, description, units MPD:32335   PL   phospholipids (plasma)   [mg/dL]  
Data set, strains Schonfeld1   inbred   10 strains     sex: both     age: 9-13wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schonfeld1 - phospholipids (plasma)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains9 strains
Mean of the strain means175   mg/dL 198   mg/dL
Median of the strain means160   mg/dL 184   mg/dL
SD of the strain means± 50.4 ± 38.8
Coefficient of variation (CV)0.288 0.196
Min–max range of strain means111   –   284   mg/dL 164   –   279   mg/dL
Mean sample size per strain6.2   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15963.6131 15963.6131 53.3032 < 0.0001
strain 8 158150.6005 19768.8251 66.0089 < 0.0001
sex:strain 8 22856.8768 2857.1096 9.54 < 0.0001
Residuals 86 25755.9 299.4872


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ f 186.0 27.8   10 8.78 0.149 145.0, 228.0 0.22
129X1/SvJ m 199.0 14.0   5 6.24 0.0703 175.0, 212.0 0.03
AKR/J f 147.0 9.04   5 4.04 0.0614 139.0, 162.0 -0.55
BALB/cByJ f 158.0 24.8   10 7.84 0.157 126.0, 196.0 -0.34
BALB/cByJ m 170.0 15.7   5 7.02 0.0921 156.0, 196.0 -0.72
C3H/HeJ f 284.0 25.7   5 11.5 0.0904 240.0, 305.0 2.16
C3H/HeJ m 245.0 8.82   5 3.94 0.0361 230.0, 252.0 1.21
C57BL/6ByJ f 143.0 13.8   5 6.19 0.0967 121.0, 155.0 -0.63
C57BL/6ByJ m 169.0 11.8   5 5.29 0.07 153.0, 186.0 -0.75
C57BL/6J f 133.0 10.6   10 3.37 0.0803 113.0, 147.0 -0.83
C57BL/6J m 183.0 10.7   5 4.77 0.0583 168.0, 196.0 -0.39
DBA/1LacJ f 111.0 9.88   5 4.42 0.0889 100.0, 120.0 -1.27
DBA/1LacJ m 164.0 8.98   5 4.02 0.0548 149.0, 173.0 -0.88
NZB/BlNJ f 217.0 23.5   5 10.5 0.108 178.0, 235.0 0.83
NZB/BlNJ m 279.0 19.3   5 8.62 0.0691 252.0, 304.0 2.09
PL/J f 207.0 6.84   5 3.06 0.0331 200.0, 214.0 0.64
PL/J m 189.0 13.5   5 6.05 0.0716 174.0, 206.0 -0.23
SWR/J f 163.0 4.97   5 2.22 0.0305 155.0, 168.0 -0.24
SWR/J m 184.0 10.6   4 5.32 0.0576 176.0, 200.0 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ f 186.0 5.4725 196.8791 175.1209
129X1/SvJ m 198.6 7.7393 213.9853 183.2147
BALB/cByJ f 157.7 5.4725 168.5791 146.8209
BALB/cByJ m 170.4 7.7393 185.7853 155.0147
C3H/HeJ f 284.0 7.7393 299.3853 268.6147
C3H/HeJ m 244.6 7.7393 259.9853 229.2147
C57BL/6ByJ f 143.2 7.7393 158.5853 127.8147
C57BL/6ByJ m 168.8 7.7393 184.1853 153.4147
C57BL/6J f 132.6 5.4725 143.4791 121.7209
C57BL/6J m 182.8 7.7393 198.1853 167.4147
DBA/1LacJ f 111.2 7.7393 126.5853 95.8147
DBA/1LacJ m 163.8 7.7393 179.1853 148.4147
NZB/BlNJ f 217.0 7.7393 232.3853 201.6147
NZB/BlNJ m 278.8 7.7393 294.1853 263.4147
PL/J f 206.6 7.7393 221.9853 191.2147
PL/J m 189.0 7.7393 204.3853 173.6147
SWR/J f 163.2 7.7393 178.5853 147.8147
SWR/J m 184.5 8.6528 201.7013 167.2987


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ both 192.3 4.7394 201.7215 182.8785
BALB/cByJ both 164.05 4.7394 173.4715 154.6285
C3H/HeJ both 264.3 5.4725 275.1791 253.4209
C57BL/6ByJ both 156.0 5.4725 166.8791 145.1209
C57BL/6J both 157.7 4.7394 167.1215 148.2785
DBA/1LacJ both 137.5 5.4725 148.3791 126.6209
NZB/BlNJ both 247.9 5.4725 258.7791 237.0209
PL/J both 197.8 5.4725 208.6791 186.9209
SWR/J both 173.85 5.8045 185.389 162.311




  GWAS USING LINEAR MIXED MODELS