Project measure / variable:   Svenson4   bone_area

ID, description, units MPD:27410   bone_area   whole body bone area, head excluded   [cm2]  
Data set, strains Svenson4   B6.PWD consomic w/par   28 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Svenson4 - whole body bone area, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means11.1   cm2 11.5   cm2
Median of the strain means11.0   cm2 11.4   cm2
SD of the strain means± 0.781 ± 0.779
Coefficient of variation (CV)0.0706 0.0679
Min–max range of strain means9.71   –   13.0   cm2 10.2   –   13.4   cm2
Mean sample size per strain9.9   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 31.4216 31.4216 42.5565 < 0.0001
strain 27 238.5917 8.8367 11.9682 < 0.0001
sex:strain 27 80.4077 2.9781 4.0334 < 0.0001
Residuals 498 367.6977 0.7383


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 11.0 0.64   8 0.226 0.0581 9.91, 11.8 -0.08
B6.PWD-Chr1 m 10.7 0.549   8 0.194 0.0512 9.83, 11.6 -0.99
B6.PWD-Chr10.1 f 9.88 0.926   12 0.267 0.0937 8.24, 11.3 -1.51
B6.PWD-Chr10.1 m 11.7 1.48   10 0.467 0.126 10.3, 14.6 0.29
B6.PWD-Chr10.2 f 11.3 0.782   14 0.209 0.0693 10.1, 12.9 0.31
B6.PWD-Chr10.2 m 11.6 0.72   13 0.2 0.062 10.4, 13.1 0.16
B6.PWD-Chr10.3 f 10.7 0.952   9 0.317 0.0892 9.31, 11.7 -0.46
B6.PWD-Chr10.3 m 11.3 1.32   8 0.466 0.117 8.77, 13.1 -0.22
B6.PWD-Chr11.1 f 11.6 0.88   9 0.293 0.0759 10.5, 13.2 0.69
B6.PWD-Chr11.1 m 12.3 0.461   8 0.163 0.0374 11.7, 13.2 1.06
B6.PWD-Chr11.2 f 10.7 0.764   11 0.23 0.0712 9.86, 12.2 -0.46
B6.PWD-Chr11.2 m 11.9 0.976   12 0.282 0.0819 10.7, 13.4 0.55
B6.PWD-Chr11.3 f 10.8 0.63   11 0.19 0.0582 9.44, 11.7 -0.33
B6.PWD-Chr11.3 m 10.2 0.603   8 0.213 0.0594 9.42, 11.2 -1.64
B6.PWD-Chr12 f 11.1 0.656   8 0.232 0.0592 9.99, 12.0 0.05
B6.PWD-Chr12 m 10.6 0.661   8 0.234 0.0623 9.93, 11.8 -1.12
B6.PWD-Chr13 f 9.71 0.917   8 0.324 0.0944 8.49, 11.0 -1.73
B6.PWD-Chr13 m 10.5 1.08   8 0.381 0.102 8.69, 12.1 -1.25
B6.PWD-Chr14 f 11.5 0.498   8 0.176 0.0431 10.9, 12.2 0.56
B6.PWD-Chr14 m 11.3 0.927   8 0.328 0.0823 9.88, 12.6 -0.22
B6.PWD-Chr15 f 12.0 0.529   8 0.187 0.0441 10.9, 12.8 1.21
B6.PWD-Chr15 m 13.4 0.804   8 0.284 0.0601 12.2, 14.5 2.47
B6.PWD-Chr16 f 10.5 0.929   8 0.328 0.0881 9.1, 11.7 -0.72
B6.PWD-Chr16 m 10.7 0.699   8 0.247 0.0652 10.2, 12.2 -0.99
B6.PWD-Chr17 f 11.6 0.792   9 0.264 0.0684 10.7, 13.2 0.69
B6.PWD-Chr17 m 12.5 0.87   10 0.275 0.0699 11.2, 13.8 1.32
B6.PWD-Chr18 f 11.9 0.508   9 0.169 0.0427 11.2, 12.7 1.08
B6.PWD-Chr18 m 11.5 0.724   9 0.241 0.0631 10.3, 12.5 0.03
B6.PWD-Chr19 f 11.5 0.485   8 0.171 0.0422 10.5, 12.0 0.56
B6.PWD-Chr19 m 10.4 0.79   8 0.279 0.0756 9.45, 11.7 -1.38
B6.PWD-Chr2 f 12.0 1.2   9 0.4 0.0999 10.2, 14.7 1.21
B6.PWD-Chr2 m 12.7 1.47   10 0.465 0.116 10.0, 14.9 1.57
B6.PWD-Chr3 f 11.7 0.697   8 0.246 0.0594 11.0, 12.7 0.82
B6.PWD-Chr3 m 12.4 0.655   8 0.231 0.0526 11.7, 13.7 1.19
B6.PWD-Chr5 f 13.0 0.567   10 0.179 0.0435 12.5, 14.2 2.49
B6.PWD-Chr5 m 11.4 0.995   14 0.266 0.0873 9.89, 13.5 -0.1
B6.PWD-Chr6 f 10.5 0.572   10 0.181 0.0546 9.84, 11.4 -0.72
B6.PWD-Chr6 m 11.2 0.792   8 0.28 0.0708 9.87, 12.2 -0.35
B6.PWD-Chr8 f 9.86 0.507   4 0.253 0.0514 9.11, 10.2 -1.54
B6.PWD-Chr8 m 11.4 1.26   5 0.562 0.11 10.2, 13.3 -0.1
B6.PWD-Chr9 f 10.5 0.506   8 0.179 0.0481 9.95, 11.3 -0.72
B6.PWD-Chr9 m 11.7 0.995   8 0.352 0.085 10.3, 12.9 0.29
B6.PWD-ChrX.1 f 12.0 0.583   8 0.206 0.0486 10.9, 12.6 1.21
B6.PWD-ChrX.1 m 12.1 1.07   8 0.38 0.0886 10.6, 13.2 0.8
B6.PWD-ChrX.2 f 10.7 0.612   13 0.17 0.0571 9.46, 11.7 -0.46
B6.PWD-ChrX.2 m 11.2 1.22   9 0.406 0.108 9.32, 13.0 -0.35
B6.PWD-ChrX.3 f 10.3 0.871   17 0.211 0.0848 8.75, 11.6 -0.97
B6.PWD-ChrX.3 m 11.3 0.963   8 0.34 0.0852 9.63, 12.7 -0.22
B6.PWD-ChrY f 11.0 0.776   8 0.274 0.0708 9.64, 12.2 -0.08
B6.PWD-ChrY m 11.0 0.861   8 0.304 0.0782 9.7, 12.0 -0.61
B6.PWD-mt f 11.4 0.753   8 0.266 0.0662 10.4, 12.7 0.44
B6.PWD-mt m 12.2 1.18   8 0.418 0.0971 10.4, 13.8 0.93
C57BL/6J f 10.9 0.763   19 0.175 0.0702 8.98, 11.9 -0.2
C57BL/6J m 11.7 0.727   19 0.167 0.0622 10.5, 13.0 0.29
PWD/PhJ f 10.0 0.706   23 0.147 0.0706 8.95, 11.2 -1.36
PWD/PhJ m 10.4 1.11   22 0.237 0.107 8.5, 12.3 -1.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 11.0175 0.3038 11.6144 10.4206
B6.PWD-Chr1 m 10.7325 0.3038 11.3294 10.1356
B6.PWD-Chr10.1 f 9.88 0.2481 10.3674 9.3926
B6.PWD-Chr10.1 m 11.7 0.2717 12.2339 11.1661
B6.PWD-Chr10.2 f 11.29 0.2297 11.7412 10.8388
B6.PWD-Chr10.2 m 11.6246 0.2383 12.0929 11.1564
B6.PWD-Chr10.3 f 10.6767 0.2864 11.2394 10.1139
B6.PWD-Chr10.3 m 11.2675 0.3038 11.8644 10.6706
B6.PWD-Chr11.1 f 11.5889 0.2864 12.1516 11.0261
B6.PWD-Chr11.1 m 12.3212 0.3038 12.9181 11.7244
B6.PWD-Chr11.2 f 10.7209 0.2591 11.2299 10.2119
B6.PWD-Chr11.2 m 11.9117 0.2481 12.399 11.4243
B6.PWD-Chr11.3 f 10.8227 0.2591 11.3318 10.3137
B6.PWD-Chr11.3 m 10.1538 0.3038 10.7506 9.5569
B6.PWD-Chr12 f 11.0738 0.3038 11.6706 10.4769
B6.PWD-Chr12 m 10.615 0.3038 11.2119 10.0181
B6.PWD-Chr13 f 9.7125 0.3038 10.3094 9.1156
B6.PWD-Chr13 m 10.5188 0.3038 11.1156 9.9219
B6.PWD-Chr14 f 11.5375 0.3038 12.1344 10.9406
B6.PWD-Chr14 m 11.2625 0.3038 11.8594 10.6656
B6.PWD-Chr15 f 12.0013 0.3038 12.5981 11.4044
B6.PWD-Chr15 m 13.3863 0.3038 13.9831 12.7894
B6.PWD-Chr16 f 10.5438 0.3038 11.1406 9.9469
B6.PWD-Chr16 m 10.715 0.3038 11.3119 10.1181
B6.PWD-Chr17 f 11.5689 0.2864 12.1316 11.0061
B6.PWD-Chr17 m 12.451 0.2717 12.9849 11.9171
B6.PWD-Chr18 f 11.8922 0.2864 12.455 11.3295
B6.PWD-Chr18 m 11.4789 0.2864 12.0416 10.9161
B6.PWD-Chr19 f 11.4812 0.3038 12.0781 10.8844
B6.PWD-Chr19 m 10.4425 0.3038 11.0394 9.8456
B6.PWD-Chr2 f 12.0222 0.2864 12.585 11.4595
B6.PWD-Chr2 m 12.714 0.2717 13.2479 12.1801
B6.PWD-Chr3 f 11.74 0.3038 12.3369 11.1431
B6.PWD-Chr3 m 12.4488 0.3038 13.0456 11.8519
B6.PWD-Chr5 f 13.034 0.2717 13.5679 12.5001
B6.PWD-Chr5 m 11.4036 0.2297 11.8548 10.9524
B6.PWD-Chr6 f 10.467 0.2717 11.0009 9.9331
B6.PWD-Chr6 m 11.1837 0.3038 11.7806 10.5869
B6.PWD-Chr8 f 9.86 0.4296 10.7041 9.0159
B6.PWD-Chr8 m 11.444 0.3843 12.199 10.689
B6.PWD-Chr9 f 10.5087 0.3038 11.1056 9.9119
B6.PWD-Chr9 m 11.7125 0.3038 12.3094 11.1156
B6.PWD-ChrX.1 f 11.9762 0.3038 12.5731 11.3794
B6.PWD-ChrX.1 m 12.1362 0.3038 12.7331 11.5394
B6.PWD-ChrX.2 f 10.72 0.2383 11.1882 10.2518
B6.PWD-ChrX.2 m 11.2278 0.2864 11.7905 10.665
B6.PWD-ChrX.3 f 10.2712 0.2084 10.6806 9.8617
B6.PWD-ChrX.3 m 11.2988 0.3038 11.8956 10.7019
B6.PWD-ChrY f 10.9537 0.3038 11.5506 10.3569
B6.PWD-ChrY m 11.0137 0.3038 11.6106 10.4169
B6.PWD-mt f 11.3775 0.3038 11.9744 10.7806
B6.PWD-mt m 12.1625 0.3038 12.7594 11.5656
C57BL/6J f 10.8653 0.1971 11.2526 10.478
C57BL/6J m 11.6911 0.1971 12.0784 11.3037
PWD/PhJ f 9.9957 0.1792 10.3477 9.6436
PWD/PhJ m 10.4064 0.1832 10.7663 10.0464


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 10.875 0.2148 11.2971 10.4529
B6.PWD-Chr10.1 both 10.79 0.184 11.1514 10.4286
B6.PWD-Chr10.2 both 11.4573 0.1655 11.7824 11.1322
B6.PWD-Chr10.3 both 10.9721 0.2088 11.3823 10.5619
B6.PWD-Chr11.1 both 11.9551 0.2088 12.3652 11.5449
B6.PWD-Chr11.2 both 11.3163 0.1793 11.6686 10.9639
B6.PWD-Chr11.3 both 10.4882 0.1996 10.8805 10.096
B6.PWD-Chr12 both 10.8444 0.2148 11.2664 10.4223
B6.PWD-Chr13 both 10.1156 0.2148 10.5377 9.6936
B6.PWD-Chr14 both 11.4 0.2148 11.8221 10.9779
B6.PWD-Chr15 both 12.6938 0.2148 13.1158 12.2717
B6.PWD-Chr16 both 10.6294 0.2148 11.0514 10.2073
B6.PWD-Chr17 both 12.0099 0.1974 12.3978 11.6221
B6.PWD-Chr18 both 11.6856 0.2025 12.0835 11.2876
B6.PWD-Chr19 both 10.9619 0.2148 11.3839 10.5398
B6.PWD-Chr2 both 12.3681 0.1974 12.756 11.9803
B6.PWD-Chr3 both 12.0944 0.2148 12.5164 11.6723
B6.PWD-Chr5 both 12.2188 0.1779 12.5683 11.8693
B6.PWD-Chr6 both 10.8254 0.2038 11.2258 10.425
B6.PWD-Chr8 both 10.652 0.2882 11.2183 10.0857
B6.PWD-Chr9 both 11.1106 0.2148 11.5327 10.6886
B6.PWD-ChrX.1 both 12.0562 0.2148 12.4783 11.6342
B6.PWD-ChrX.2 both 10.9739 0.1863 11.3399 10.6079
B6.PWD-ChrX.3 both 10.785 0.1842 11.1469 10.423
B6.PWD-ChrY both 10.9837 0.2148 11.4058 10.5617
B6.PWD-mt both 11.77 0.2148 12.1921 11.3479
C57BL/6J both 11.2782 0.1394 11.552 11.0043
PWD/PhJ both 10.201 0.1281 10.4527 9.9493




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA