Project measure / variable:   Lake2   activity

ID, description, units MPD:21701   activity   spontaneous activity level in view-jar (score 0-3)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
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  STRAIN COMPARISON PLOT
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Lake2 - spontaneous activity level in view-jar (score 0-3)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.83   score 1.96   score
Median of the strain means2.00   score 2.00   score
SD of the strain means± 0.287 ± 0.170
Coefficient of variation (CV)0.157 0.0868
Min–max range of strain means0.938   –   2.00   score 1.50   –   2.29   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.2834 3.2834 27.3896 < 0.0001
strain 22 21.1299 0.9605 8.012 < 0.0001
sex:strain 22 5.4992 0.25 2.0852 0.0033
Residuals 336 40.2786 0.1199


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.938 0.854   16 0.213 0.911 -3.11
A/J m 1.62 0.518   8 0.183 0.318 1.0, 2.0 -2.0
B6.A-Chr1 f 1.75 0.463   8 0.164 0.265 1.0, 2.0 -0.29
B6.A-Chr1 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr10 f 1.75 0.463   8 0.164 0.265 1.0, 2.0 -0.29
B6.A-Chr10 m 1.75 0.463   8 0.164 0.265 1.0, 2.0 -1.24
B6.A-Chr11 f 1.88 0.354   8 0.125 0.189 1.0, 2.0 0.17
B6.A-Chr11 m 2.2 0.632   10 0.2 0.287 1.0, 3.0 1.4
B6.A-Chr12 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr12 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr13 f 2.0 0.0   5 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr13 m 2.29 0.488   7 0.184 0.213 2.0, 3.0 1.93
B6.A-Chr14 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr14 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr15 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 -1.16
B6.A-Chr15 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 -2.71
B6.A-Chr16 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr16 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr17 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr17 m 2.12 0.354   8 0.125 0.166 2.0, 3.0 0.93
B6.A-Chr18 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr18 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr19 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr19 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr2 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr2 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr3 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr3 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr4 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr4 m 1.75 0.463   8 0.164 0.265 1.0, 2.0 -1.24
B6.A-Chr5 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr5 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr6 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 -1.16
B6.A-Chr6 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr7 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr7 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr8 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 -1.57
B6.A-Chr8 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-Chr9 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-Chr9 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-ChrX f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-ChrX m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
B6.A-ChrY f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.58
B6.A-ChrY m 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.23
C57BL/6J f 1.44 0.629   16 0.157 0.438 -1.36
C57BL/6J m 1.88 0.354   8 0.125 0.189 1.0, 2.0 -0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.9375 0.0866 1.1078 0.7672
A/J m 1.625 0.1224 1.8658 1.3842
B6.A-Chr1 f 1.75 0.1224 1.9908 1.5092
B6.A-Chr1 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr10 f 1.75 0.1224 1.9908 1.5092
B6.A-Chr10 m 1.75 0.1224 1.9908 1.5092
B6.A-Chr11 f 1.875 0.1224 2.1158 1.6342
B6.A-Chr11 m 2.2 0.1095 2.4154 1.9846
B6.A-Chr12 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr12 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr13 f 2.0 0.1548 2.3046 1.6954
B6.A-Chr13 m 2.2857 0.1309 2.5431 2.0283
B6.A-Chr14 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr14 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr15 f 1.5 0.1224 1.7408 1.2592
B6.A-Chr15 m 1.5 0.1224 1.7408 1.2592
B6.A-Chr16 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr16 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr17 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr17 m 2.125 0.1224 2.3658 1.8842
B6.A-Chr18 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr18 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr19 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr19 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr2 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr2 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr3 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr3 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr4 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr4 m 1.75 0.1224 1.9908 1.5092
B6.A-Chr5 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr5 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr6 f 1.5 0.1224 1.7408 1.2592
B6.A-Chr6 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr7 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr7 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr8 f 1.375 0.1224 1.6158 1.1342
B6.A-Chr8 m 2.0 0.1224 2.2408 1.7592
B6.A-Chr9 f 2.0 0.1224 2.2408 1.7592
B6.A-Chr9 m 2.0 0.1224 2.2408 1.7592
B6.A-ChrX f 2.0 0.1224 2.2408 1.7592
B6.A-ChrX m 2.0 0.1224 2.2408 1.7592
B6.A-ChrY f 2.0 0.1224 2.2408 1.7592
B6.A-ChrY m 2.0 0.1224 2.2408 1.7592
C57BL/6J f 1.4375 0.0866 1.6078 1.2672
C57BL/6J m 1.875 0.1224 2.1158 1.6342


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.2812 0.075 1.4287 1.1338
B6.A-Chr1 both 1.875 0.0866 2.0453 1.7047
B6.A-Chr10 both 1.75 0.0866 1.9203 1.5797
B6.A-Chr11 both 2.0375 0.0821 2.199 1.876
B6.A-Chr12 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr13 both 2.1429 0.1014 2.3422 1.9435
B6.A-Chr14 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr15 both 1.5 0.0866 1.6703 1.3297
B6.A-Chr16 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr17 both 2.0625 0.0866 2.2328 1.8922
B6.A-Chr18 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr19 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr2 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr3 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr4 both 1.875 0.0866 2.0453 1.7047
B6.A-Chr5 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr6 both 1.75 0.0866 1.9203 1.5797
B6.A-Chr7 both 2.0 0.0866 2.1703 1.8297
B6.A-Chr8 both 1.6875 0.0866 1.8578 1.5172
B6.A-Chr9 both 2.0 0.0866 2.1703 1.8297
B6.A-ChrX both 2.0 0.0866 2.1703 1.8297
B6.A-ChrY both 2.0 0.0866 2.1703 1.8297
C57BL/6J both 1.6562 0.075 1.8037 1.5088




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA