Project measure / variable:   Lake1   BASO

ID, description, units MPD:19985   BASO   basophil count (BASO; units per volume x 103)   [n/µL]  
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Lake1 - basophil count (BASO; units per volume x 103)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.0374   n/µL 0.0373   n/µL
Median of the strain means0.0354   n/µL 0.0361   n/µL
SD of the strain means± 0.0148 ± 0.0137
Coefficient of variation (CV)0.395 0.366
Min–max range of strain means0.00838   –   0.0637   n/µL 0.00607   –   0.0731   n/µL
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.0147 0.9037
strain 22 0.0502 0.0023 7.0527 < 0.0001
sex:strain 22 0.0201 0.0009 2.8267 < 0.0001
Residuals 321 0.1038 0.0003


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.00838 0.00528   8 0.00187 0.63 0.00457, 0.018 -1.96
A/J m 0.00607 0.0022   8 0.000776 0.361 0.00429, 0.0112 -2.29
B6.A-Chr1 f 0.062 0.0357   8 0.0126 0.576 0.0155, 0.117 1.66
B6.A-Chr1 m 0.0542 0.0192   8 0.00678 0.354 0.021, 0.0798 1.24
B6.A-Chr10 f 0.0235 0.0114   7 0.00431 0.485 0.0106, 0.0467 -0.94
B6.A-Chr10 m 0.0352 0.0139   8 0.00492 0.395 0.0128, 0.0491 -0.15
B6.A-Chr11 f 0.0554 0.023   8 0.00813 0.415 0.0317, 0.104 1.22
B6.A-Chr11 m 0.0268 0.011   8 0.0039 0.412 0.017, 0.0474 -0.77
B6.A-Chr12 f 0.0438 0.0174   8 0.00616 0.397 0.0122, 0.0654 0.43
B6.A-Chr12 m 0.0343 0.0129   8 0.00457 0.377 0.014, 0.052 -0.22
B6.A-Chr13 f 0.0253 0.00954   8 0.00337 0.376 0.0115, 0.0388 -0.82
B6.A-Chr13 m 0.029 0.00918   8 0.00325 0.317 0.0183, 0.042 -0.61
B6.A-Chr14 f 0.0371 0.0204   8 0.00722 0.55 0.00595, 0.066 -0.02
B6.A-Chr14 m 0.024 0.00802   8 0.00284 0.334 0.00898, 0.0312 -0.97
B6.A-Chr15 f 0.0354 0.0222   9 0.0074 0.627 0.0134, 0.0868 -0.14
B6.A-Chr15 m 0.0453 0.0237   7 0.00895 0.523 0.0173, 0.084 0.59
B6.A-Chr16 f 0.0263 0.0131   8 0.00462 0.497 0.0142, 0.048 -0.75
B6.A-Chr16 m 0.0408 0.0183   8 0.00649 0.45 0.00903, 0.07 0.26
B6.A-Chr17 f 0.0637 0.0215   8 0.0076 0.337 0.0394, 0.0973 1.78
B6.A-Chr17 m 0.05 0.0262   8 0.00928 0.525 0.00922, 0.0834 0.93
B6.A-Chr18 f 0.0316 0.0117   8 0.00412 0.37 0.0199, 0.053 -0.39
B6.A-Chr18 m 0.0446 0.0185   8 0.00656 0.416 0.019, 0.0735 0.53
B6.A-Chr19 f 0.0376 0.0229   8 0.00809 0.609 0.00938, 0.0812 0.01
B6.A-Chr19 m 0.0386 0.0135   7 0.00512 0.35 0.0224, 0.0556 0.09
B6.A-Chr2 f 0.0623 0.0298   7 0.0113 0.478 0.0317, 0.106 1.68
B6.A-Chr2 m 0.0361 0.00897   8 0.00317 0.249 0.0257, 0.046 -0.09
B6.A-Chr3 f 0.0456 0.027   8 0.00955 0.592 0.0166, 0.095 0.55
B6.A-Chr3 m 0.0472 0.0171   8 0.00605 0.362 0.0183, 0.0696 0.72
B6.A-Chr4 f 0.0182 0.00724   8 0.00256 0.398 0.0062, 0.0275 -1.3
B6.A-Chr4 m 0.0154 0.00871   7 0.00329 0.567 0.00657, 0.0292 -1.6
B6.A-Chr5 f 0.0347 0.0141   8 0.00499 0.407 0.0151, 0.0462 -0.18
B6.A-Chr5 m 0.0316 0.0114   8 0.00402 0.36 0.0181, 0.0485 -0.42
B6.A-Chr6 f 0.0433 0.0166   8 0.00587 0.383 0.0194, 0.0672 0.4
B6.A-Chr6 m 0.0417 0.0247   8 0.00872 0.592 0.00575, 0.0761 0.32
B6.A-Chr7 f 0.028 0.0129   8 0.00456 0.46 0.0102, 0.0528 -0.64
B6.A-Chr7 m 0.0731 0.0292   8 0.0103 0.4 0.0388, 0.119 2.62
B6.A-Chr8 f 0.0343 0.0184   8 0.0065 0.536 0.00929, 0.063 -0.21
B6.A-Chr8 m 0.0467 0.0127   12 0.00366 0.272 0.0205, 0.063 0.69
B6.A-Chr9 f 0.054 0.028   8 0.00989 0.518 0.0228, 0.102 1.12
B6.A-Chr9 m 0.044 0.0225   8 0.00794 0.51 0.0191, 0.0775 0.49
B6.A-ChrX f 0.0207 0.0118   8 0.00419 0.571 0.00763, 0.044 -1.13
B6.A-ChrX m 0.0276 0.00952   8 0.00337 0.345 0.0156, 0.0472 -0.71
B6.A-ChrY f 0.0394 0.022   7 0.00831 0.559 0.00858, 0.0702 0.13
B6.A-ChrY m 0.0328 0.0145   8 0.00511 0.441 0.0113, 0.0575 -0.33
C57BL/6J f 0.03 0.00705   8 0.00249 0.235 0.0202, 0.0408 -0.5
C57BL/6J m 0.0329 0.0147   8 0.00519 0.447 0.017, 0.0546 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.0084 0.0064 0.0209 0.0
A/J m 0.0061 0.0064 0.0186 0.0
B6.A-Chr1 f 0.062 0.0064 0.0745 0.0495
B6.A-Chr1 m 0.0542 0.0064 0.0667 0.0417
B6.A-Chr10 f 0.0235 0.0068 0.0369 0.0102
B6.A-Chr10 m 0.0352 0.0064 0.0477 0.0227
B6.A-Chr11 f 0.0554 0.0064 0.0679 0.0429
B6.A-Chr11 m 0.0268 0.0064 0.0393 0.0143
B6.A-Chr12 f 0.0438 0.0064 0.0563 0.0313
B6.A-Chr12 m 0.0343 0.0064 0.0468 0.0218
B6.A-Chr13 f 0.0253 0.0064 0.0378 0.0128
B6.A-Chr13 m 0.029 0.0064 0.0415 0.0165
B6.A-Chr14 f 0.0371 0.0064 0.0497 0.0246
B6.A-Chr14 m 0.024 0.0064 0.0365 0.0115
B6.A-Chr15 f 0.0354 0.006 0.0472 0.0236
B6.A-Chr15 m 0.0453 0.0068 0.0587 0.0319
B6.A-Chr16 f 0.0263 0.0064 0.0388 0.0137
B6.A-Chr16 m 0.0408 0.0064 0.0533 0.0282
B6.A-Chr17 f 0.0637 0.0064 0.0762 0.0512
B6.A-Chr17 m 0.05 0.0064 0.0625 0.0375
B6.A-Chr18 f 0.0316 0.0064 0.0441 0.0191
B6.A-Chr18 m 0.0446 0.0064 0.0571 0.0321
B6.A-Chr19 f 0.0376 0.0064 0.0501 0.0251
B6.A-Chr19 m 0.0386 0.0068 0.052 0.0253
B6.A-Chr2 f 0.0623 0.0068 0.0757 0.049
B6.A-Chr2 m 0.0361 0.0064 0.0486 0.0236
B6.A-Chr3 f 0.0456 0.0064 0.0581 0.0331
B6.A-Chr3 m 0.0472 0.0064 0.0597 0.0347
B6.A-Chr4 f 0.0182 0.0064 0.0307 0.0057
B6.A-Chr4 m 0.0154 0.0068 0.0287 0.002
B6.A-Chr5 f 0.0347 0.0064 0.0472 0.0222
B6.A-Chr5 m 0.0316 0.0064 0.0441 0.0191
B6.A-Chr6 f 0.0433 0.0064 0.0558 0.0308
B6.A-Chr6 m 0.0417 0.0064 0.0542 0.0292
B6.A-Chr7 f 0.028 0.0064 0.0405 0.0155
B6.A-Chr7 m 0.0731 0.0064 0.0856 0.0606
B6.A-Chr8 f 0.0343 0.0064 0.0468 0.0218
B6.A-Chr8 m 0.0467 0.0052 0.0569 0.0364
B6.A-Chr9 f 0.054 0.0064 0.0665 0.0415
B6.A-Chr9 m 0.044 0.0064 0.0565 0.0315
B6.A-ChrX f 0.0207 0.0064 0.0332 0.0082
B6.A-ChrX m 0.0276 0.0064 0.0401 0.0151
B6.A-ChrY f 0.0394 0.0068 0.0527 0.026
B6.A-ChrY m 0.0328 0.0064 0.0453 0.0203
C57BL/6J f 0.03 0.0064 0.0425 0.0175
C57BL/6J m 0.0329 0.0064 0.0454 0.0204


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.0072 0.0045 0.0161 0.0
B6.A-Chr1 both 0.0581 0.0045 0.0669 0.0492
B6.A-Chr10 both 0.0294 0.0047 0.0385 0.0202
B6.A-Chr11 both 0.0411 0.0045 0.0499 0.0322
B6.A-Chr12 both 0.039 0.0045 0.0479 0.0302
B6.A-Chr13 both 0.0272 0.0045 0.036 0.0183
B6.A-Chr14 both 0.0306 0.0045 0.0394 0.0217
B6.A-Chr15 both 0.0403 0.0045 0.0493 0.0314
B6.A-Chr16 both 0.0335 0.0045 0.0423 0.0247
B6.A-Chr17 both 0.0568 0.0045 0.0657 0.048
B6.A-Chr18 both 0.0381 0.0045 0.0469 0.0293
B6.A-Chr19 both 0.0381 0.0047 0.0473 0.029
B6.A-Chr2 both 0.0492 0.0047 0.0584 0.0401
B6.A-Chr3 both 0.0464 0.0045 0.0553 0.0376
B6.A-Chr4 both 0.0168 0.0047 0.0259 0.0076
B6.A-Chr5 both 0.0332 0.0045 0.042 0.0243
B6.A-Chr6 both 0.0425 0.0045 0.0513 0.0337
B6.A-Chr7 both 0.0506 0.0045 0.0594 0.0417
B6.A-Chr8 both 0.0405 0.0041 0.0485 0.0324
B6.A-Chr9 both 0.049 0.0045 0.0579 0.0402
B6.A-ChrX both 0.0242 0.0045 0.033 0.0153
B6.A-ChrY both 0.0361 0.0047 0.0452 0.0269
C57BL/6J both 0.0314 0.0045 0.0403 0.0226




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA