Project measure / variable:   Lake1   cHGB

ID, description, units MPD:19911   cHGB   calculated hemoglobin (HGB)   [g/dL]  
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Lake1 - calculated hemoglobin (HGB)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means14.1   g/dL 14.2   g/dL
Median of the strain means14.0   g/dL 14.1   g/dL
SD of the strain means± 0.474 ± 0.469
Coefficient of variation (CV)0.0337 0.0331
Min–max range of strain means13.3   –   14.9   g/dL 13.6   –   15.3   g/dL
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.1677 1.1677 2.0036 0.1579
strain 22 57.8092 2.6277 4.509 < 0.0001
sex:strain 22 19.2878 0.8767 1.5044 0.0698
Residuals 321 187.0698 0.5828


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 13.4 1.04   8 0.366 0.0776 10.9, 14.1 -1.42
A/J m 13.9 0.283   8 0.1 0.0203 13.5, 14.3 -0.61
B6.A-Chr1 f 14.0 0.417   8 0.148 0.0297 13.4, 14.5 -0.16
B6.A-Chr1 m 14.0 0.456   8 0.161 0.0325 13.5, 14.8 -0.4
B6.A-Chr10 f 14.5 0.765   7 0.289 0.0527 13.5, 15.6 0.9
B6.A-Chr10 m 14.5 0.532   8 0.188 0.0366 13.5, 15.3 0.67
B6.A-Chr11 f 14.6 0.694   8 0.245 0.0475 13.5, 15.9 1.11
B6.A-Chr11 m 13.8 1.13   8 0.399 0.0816 11.7, 15.4 -0.82
B6.A-Chr12 f 14.8 0.628   8 0.222 0.0424 13.9, 15.7 1.53
B6.A-Chr12 m 14.0 0.738   8 0.261 0.0526 13.0, 15.2 -0.4
B6.A-Chr13 f 13.8 0.899   8 0.318 0.0654 11.8, 14.6 -0.58
B6.A-Chr13 m 13.7 0.796   8 0.282 0.0581 12.4, 14.7 -1.04
B6.A-Chr14 f 14.3 0.709   8 0.251 0.0495 13.4, 15.3 0.48
B6.A-Chr14 m 13.6 0.763   8 0.27 0.0562 12.0, 14.4 -1.25
B6.A-Chr15 f 13.7 1.3   9 0.433 0.0948 10.3, 14.5 -0.79
B6.A-Chr15 m 14.1 0.412   7 0.156 0.0292 13.3, 14.5 -0.19
B6.A-Chr16 f 14.3 0.42   8 0.149 0.0293 13.8, 14.9 0.48
B6.A-Chr16 m 14.8 0.349   8 0.124 0.0237 14.3, 15.4 1.31
B6.A-Chr17 f 14.5 0.407   8 0.144 0.0281 13.9, 15.1 0.9
B6.A-Chr17 m 14.5 0.652   8 0.231 0.0452 13.6, 15.4 0.67
B6.A-Chr18 f 14.2 0.484   8 0.171 0.034 13.7, 14.9 0.27
B6.A-Chr18 m 14.2 0.494   8 0.175 0.0348 13.3, 14.9 0.03
B6.A-Chr19 f 14.9 1.15   8 0.405 0.0771 13.1, 16.2 1.74
B6.A-Chr19 m 15.0 0.845   7 0.32 0.0563 13.8, 16.1 1.73
B6.A-Chr2 f 13.5 0.456   7 0.172 0.0338 12.9, 14.2 -1.21
B6.A-Chr2 m 13.8 0.334   8 0.118 0.0241 13.2, 14.2 -0.82
B6.A-Chr3 f 13.7 0.648   8 0.229 0.0473 12.7, 14.5 -0.79
B6.A-Chr3 m 14.0 0.394   8 0.139 0.0281 13.5, 14.7 -0.4
B6.A-Chr4 f 13.8 0.897   8 0.317 0.0651 12.0, 14.9 -0.58
B6.A-Chr4 m 14.1 0.367   7 0.139 0.026 13.4, 14.5 -0.19
B6.A-Chr5 f 14.0 0.532   8 0.188 0.0379 12.9, 14.6 -0.16
B6.A-Chr5 m 13.7 0.49   8 0.173 0.0358 13.1, 14.4 -1.04
B6.A-Chr6 f 14.3 0.328   8 0.116 0.023 13.9, 14.9 0.48
B6.A-Chr6 m 14.2 1.16   8 0.41 0.0819 12.5, 15.4 0.03
B6.A-Chr7 f 14.8 0.519   8 0.184 0.0351 14.0, 15.6 1.53
B6.A-Chr7 m 15.0 0.325   8 0.115 0.0216 14.4, 15.5 1.73
B6.A-Chr8 f 13.8 0.334   8 0.118 0.0242 13.0, 14.0 -0.58
B6.A-Chr8 m 14.3 0.508   12 0.147 0.0356 13.7, 15.1 0.24
B6.A-Chr9 f 14.2 0.562   8 0.199 0.0395 13.0, 14.8 0.27
B6.A-Chr9 m 15.3 0.337   8 0.119 0.0221 14.9, 15.8 2.37
B6.A-ChrX f 13.9 0.5   8 0.177 0.0359 13.2, 14.6 -0.37
B6.A-ChrX m 14.0 0.542   8 0.192 0.0386 13.0, 14.6 -0.4
B6.A-ChrY f 13.4 2.95   7 1.11 0.22 6.9, 15.3 -1.42
B6.A-ChrY m 14.2 0.484   8 0.171 0.0341 13.5, 15.1 0.03
C57BL/6J f 13.3 0.489   8 0.173 0.0368 12.6, 14.1 -1.63
C57BL/6J m 13.6 0.504   8 0.178 0.037 13.0, 14.6 -1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 13.3625 0.2699 13.8935 12.8315
A/J m 13.9 0.2699 14.431 13.369
B6.A-Chr1 f 14.0375 0.2699 14.5685 13.5065
B6.A-Chr1 m 14.025 0.2699 14.556 13.494
B6.A-Chr10 f 14.5143 0.2885 15.0819 13.9466
B6.A-Chr10 m 14.5375 0.2699 15.0685 14.0065
B6.A-Chr11 f 14.6125 0.2699 15.1435 14.0815
B6.A-Chr11 m 13.8375 0.2699 14.3685 13.3065
B6.A-Chr12 f 14.8 0.2699 15.331 14.269
B6.A-Chr12 m 14.0125 0.2699 14.5435 13.4815
B6.A-Chr13 f 13.75 0.2699 14.281 13.219
B6.A-Chr13 m 13.7 0.2699 14.231 13.169
B6.A-Chr14 f 14.3375 0.2699 14.8685 13.8065
B6.A-Chr14 m 13.575 0.2699 14.106 13.044
B6.A-Chr15 f 13.7 0.2545 14.2006 13.1994
B6.A-Chr15 m 14.1 0.2885 14.6677 13.5323
B6.A-Chr16 f 14.325 0.2699 14.856 13.794
B6.A-Chr16 m 14.775 0.2699 15.306 14.244
B6.A-Chr17 f 14.4625 0.2699 14.9935 13.9315
B6.A-Chr17 m 14.45 0.2699 14.981 13.919
B6.A-Chr18 f 14.2375 0.2699 14.7685 13.7065
B6.A-Chr18 m 14.1875 0.2699 14.7185 13.6565
B6.A-Chr19 f 14.8625 0.2699 15.3935 14.3315
B6.A-Chr19 m 15.0143 0.2885 15.5819 14.4466
B6.A-Chr2 f 13.5143 0.2885 14.0819 12.9466
B6.A-Chr2 m 13.8375 0.2699 14.3685 13.3065
B6.A-Chr3 f 13.7 0.2699 14.231 13.169
B6.A-Chr3 m 14.0125 0.2699 14.5435 13.4815
B6.A-Chr4 f 13.775 0.2699 14.306 13.244
B6.A-Chr4 m 14.1143 0.2885 14.6819 13.5466
B6.A-Chr5 f 14.0375 0.2699 14.5685 13.5065
B6.A-Chr5 m 13.6625 0.2699 14.1935 13.1315
B6.A-Chr6 f 14.275 0.2699 14.806 13.744
B6.A-Chr6 m 14.175 0.2699 14.706 13.644
B6.A-Chr7 f 14.8125 0.2699 15.3435 14.2815
B6.A-Chr7 m 15.05 0.2699 15.581 14.519
B6.A-Chr8 f 13.7625 0.2699 14.2935 13.2315
B6.A-Chr8 m 14.275 0.2204 14.7086 13.8414
B6.A-Chr9 f 14.2125 0.2699 14.7435 13.6815
B6.A-Chr9 m 15.275 0.2699 15.806 14.744
B6.A-ChrX f 13.9125 0.2699 14.4435 13.3815
B6.A-ChrX m 14.0375 0.2699 14.5685 13.5065
B6.A-ChrY f 13.4286 0.2885 13.9962 12.8609
B6.A-ChrY m 14.2 0.2699 14.731 13.669
C57BL/6J f 13.275 0.2699 13.806 12.744
C57BL/6J m 13.6375 0.2699 14.1685 13.1065


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 13.6313 0.1908 14.0067 13.2558
B6.A-Chr1 both 14.0313 0.1908 14.4067 13.6558
B6.A-Chr10 both 14.5259 0.1975 14.9145 14.1372
B6.A-Chr11 both 14.225 0.1908 14.6005 13.8495
B6.A-Chr12 both 14.4063 0.1908 14.7817 14.0308
B6.A-Chr13 both 13.725 0.1908 14.1005 13.3495
B6.A-Chr14 both 13.9563 0.1908 14.3317 13.5808
B6.A-Chr15 both 13.9 0.1924 14.2784 13.5216
B6.A-Chr16 both 14.55 0.1908 14.9255 14.1745
B6.A-Chr17 both 14.4563 0.1908 14.8317 14.0808
B6.A-Chr18 both 14.2125 0.1908 14.588 13.837
B6.A-Chr19 both 14.9384 0.1975 15.327 14.5497
B6.A-Chr2 both 13.6759 0.1975 14.0645 13.2872
B6.A-Chr3 both 13.8563 0.1908 14.2317 13.4808
B6.A-Chr4 both 13.9446 0.1975 14.3333 13.556
B6.A-Chr5 both 13.85 0.1908 14.2255 13.4745
B6.A-Chr6 both 14.225 0.1908 14.6005 13.8495
B6.A-Chr7 both 14.9313 0.1908 15.3067 14.5558
B6.A-Chr8 both 14.0188 0.1742 14.3615 13.676
B6.A-Chr9 both 14.7438 0.1908 15.1192 14.3683
B6.A-ChrX both 13.975 0.1908 14.3505 13.5995
B6.A-ChrY both 13.8143 0.1975 14.2029 13.4256
C57BL/6J both 13.4563 0.1908 13.8317 13.0808




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA