Project measure / variable:   Lake3   line_crossings

ID, description, units MPD:19011   line_crossings   number of line crossings in 5 min test   [n]  
Data set, strains Lake3   B6.A consomic w/par   23 strains     sex: both     age: 8-9wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Lake3 - number of line crossings in 5 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means118   n 120   n
Median of the strain means117   n 124   n
SD of the strain means± 38.7 ± 33.8
Coefficient of variation (CV)0.327 0.282
Min–max range of strain means7.50   –   176   n 3.00   –   180   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2980.1498 2980.1498 2.1898 0.1399
strain 22 473116.4107 21505.2914 15.8017 < 0.0001
sex:strain 22 81705.8067 3713.9003 2.7289 0.0001
Residuals 336 457277.1196 1360.9438


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 7.5 14.8   16 3.7 1.98 -2.86
A/J m 3.0 5.32   8 1.88 1.77 -3.46
B6.A-Chr1 f 99.0 25.2   8 8.91 0.255 54.0, 134.0 -0.5
B6.A-Chr1 m 102.0 43.1   8 15.2 0.422 51.0, 153.0 -0.53
B6.A-Chr10 f 90.1 41.0   8 14.5 0.455 -0.73
B6.A-Chr10 m 80.6 47.6   8 16.8 0.591 -1.17
B6.A-Chr11 f 165.0 37.8   8 13.4 0.229 113.0, 238.0 1.2
B6.A-Chr11 m 126.0 33.3   10 10.5 0.265 77.0, 178.0 0.18
B6.A-Chr12 f 109.0 44.6   8 15.8 0.409 59.0, 204.0 -0.24
B6.A-Chr12 m 124.0 34.2   8 12.1 0.276 82.0, 176.0 0.12
B6.A-Chr13 f 71.8 51.3   5 22.9 0.714 -1.2
B6.A-Chr13 m 149.0 34.1   7 12.9 0.229 101.0, 185.0 0.86
B6.A-Chr14 f 118.0 16.1   8 5.68 0.136 86.0, 137.0 -0.01
B6.A-Chr14 m 139.0 63.4   8 22.4 0.457 0.56
B6.A-Chr15 f 101.0 24.9   8 8.79 0.246 63.0, 132.0 -0.45
B6.A-Chr15 m 107.0 26.6   8 9.42 0.249 84.0, 165.0 -0.38
B6.A-Chr16 f 152.0 34.2   8 12.1 0.224 90.0, 212.0 0.87
B6.A-Chr16 m 107.0 27.4   8 9.68 0.255 78.0, 157.0 -0.38
B6.A-Chr17 f 124.0 34.1   8 12.1 0.275 65.0, 159.0 0.15
B6.A-Chr17 m 137.0 37.1   8 13.1 0.27 79.0, 187.0 0.5
B6.A-Chr18 f 115.0 61.2   8 21.6 0.531 27.0, 199.0 -0.09
B6.A-Chr18 m 112.0 33.1   8 11.7 0.296 73.0, 174.0 -0.24
B6.A-Chr19 f 132.0 30.0   8 10.6 0.227 81.0, 165.0 0.35
B6.A-Chr19 m 136.0 38.9   8 13.8 0.286 98.0, 198.0 0.47
B6.A-Chr2 f 164.0 60.1   8 21.2 0.366 92.0, 258.0 1.18
B6.A-Chr2 m 180.0 30.4   8 10.7 0.169 141.0, 227.0 1.78
B6.A-Chr3 f 117.0 20.1   8 7.11 0.172 80.0, 136.0 -0.04
B6.A-Chr3 m 122.0 30.7   8 10.9 0.253 81.0, 166.0 0.06
B6.A-Chr4 f 92.4 20.5   8 7.25 0.222 71.0, 133.0 -0.67
B6.A-Chr4 m 132.0 36.8   8 13.0 0.279 58.0, 165.0 0.36
B6.A-Chr5 f 170.0 24.3   8 8.59 0.143 128.0, 206.0 1.33
B6.A-Chr5 m 101.0 33.8   8 12.0 0.335 55.0, 138.0 -0.56
B6.A-Chr6 f 82.1 37.8   8 13.4 0.46 4.0, 124.0 -0.94
B6.A-Chr6 m 102.0 57.2   8 20.2 0.563 2.0, 177.0 -0.53
B6.A-Chr7 f 150.0 42.5   8 15.0 0.283 81.0, 201.0 0.82
B6.A-Chr7 m 108.0 49.3   8 17.4 0.457 -0.35
B6.A-Chr8 f 89.0 32.9   8 11.6 0.37 42.0, 133.0 -0.76
B6.A-Chr8 m 114.0 25.7   8 9.07 0.225 79.0, 162.0 -0.18
B6.A-Chr9 f 141.0 34.6   8 12.2 0.245 90.0, 191.0 0.58
B6.A-Chr9 m 145.0 42.0   8 14.9 0.289 87.0, 211.0 0.74
B6.A-ChrX f 176.0 18.2   8 6.42 0.103 151.0, 202.0 1.49
B6.A-ChrX m 159.0 37.4   8 13.2 0.235 110.0, 207.0 1.15
B6.A-ChrY f 148.0 42.3   8 15.0 0.286 87.0, 207.0 0.77
B6.A-ChrY m 133.0 42.7   8 15.1 0.321 64.0, 189.0 0.39
C57BL/6J f 109.0 39.9   16 9.98 0.365 26.0, 167.0 -0.24
C57BL/6J m 141.0 27.6   8 9.75 0.195 102.0, 185.0 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 7.5 9.2227 25.6416 0.0
A/J m 3.0 13.0429 28.6561 0.0
B6.A-Chr1 f 99.0 13.0429 124.6561 73.3439
B6.A-Chr1 m 102.25 13.0429 127.9061 76.5939
B6.A-Chr10 f 90.125 13.0429 115.7811 64.4689
B6.A-Chr10 m 80.625 13.0429 106.2811 54.9689
B6.A-Chr11 f 165.25 13.0429 190.9061 139.5939
B6.A-Chr11 m 125.9 11.6659 148.8475 102.9525
B6.A-Chr12 f 109.0 13.0429 134.6561 83.3439
B6.A-Chr12 m 124.0 13.0429 149.6561 98.3439
B6.A-Chr13 f 71.8 16.4981 104.2527 39.3473
B6.A-Chr13 m 148.8571 13.9435 176.2847 121.4296
B6.A-Chr14 f 118.0 13.0429 143.6561 92.3439
B6.A-Chr14 m 138.875 13.0429 164.5311 113.2189
B6.A-Chr15 f 101.0 13.0429 126.6561 75.3439
B6.A-Chr15 m 107.125 13.0429 132.7811 81.4689
B6.A-Chr16 f 152.375 13.0429 178.0311 126.7189
B6.A-Chr16 m 107.375 13.0429 133.0311 81.7189
B6.A-Chr17 f 123.875 13.0429 149.5311 98.2189
B6.A-Chr17 m 137.125 13.0429 162.7811 111.4689
B6.A-Chr18 f 115.25 13.0429 140.9061 89.5939
B6.A-Chr18 m 112.0 13.0429 137.6561 86.3439
B6.A-Chr19 f 132.0 13.0429 157.6561 106.3439
B6.A-Chr19 m 136.0 13.0429 161.6561 110.3439
B6.A-Chr2 f 164.375 13.0429 190.0311 138.7189
B6.A-Chr2 m 180.0 13.0429 205.6561 154.3439
B6.A-Chr3 f 117.0 13.0429 142.6561 91.3439
B6.A-Chr3 m 121.625 13.0429 147.2811 95.9689
B6.A-Chr4 f 92.375 13.0429 118.0311 66.7189
B6.A-Chr4 m 132.0 13.0429 157.6561 106.3439
B6.A-Chr5 f 170.375 13.0429 196.0311 144.7189
B6.A-Chr5 m 101.125 13.0429 126.7811 75.4689
B6.A-Chr6 f 82.125 13.0429 107.7811 56.4689
B6.A-Chr6 m 101.5 13.0429 127.1561 75.8439
B6.A-Chr7 f 150.25 13.0429 175.9061 124.5939
B6.A-Chr7 m 108.0 13.0429 133.6561 82.3439
B6.A-Chr8 f 89.0 13.0429 114.6561 63.3439
B6.A-Chr8 m 114.125 13.0429 139.7811 88.4689
B6.A-Chr9 f 141.0 13.0429 166.6561 115.3439
B6.A-Chr9 m 145.25 13.0429 170.9061 119.5939
B6.A-ChrX f 176.375 13.0429 202.0311 150.7189
B6.A-ChrX m 159.125 13.0429 184.7811 133.4689
B6.A-ChrY f 148.125 13.0429 173.7811 122.4689
B6.A-ChrY m 133.0 13.0429 158.6561 107.3439
C57BL/6J f 109.3125 9.2227 127.4541 91.1709
C57BL/6J m 141.375 13.0429 167.0311 115.7189


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 5.25 7.9871 20.9611 0.0
B6.A-Chr1 both 100.625 9.2227 118.7666 82.4834
B6.A-Chr10 both 85.375 9.2227 103.5166 67.2334
B6.A-Chr11 both 145.575 8.7495 162.7856 128.3644
B6.A-Chr12 both 116.5 9.2227 134.6416 98.3584
B6.A-Chr13 both 110.3286 10.8006 131.5738 89.0833
B6.A-Chr14 both 128.4375 9.2227 146.5791 110.2959
B6.A-Chr15 both 104.0625 9.2227 122.2041 85.9209
B6.A-Chr16 both 129.875 9.2227 148.0166 111.7334
B6.A-Chr17 both 130.5 9.2227 148.6416 112.3584
B6.A-Chr18 both 113.625 9.2227 131.7666 95.4834
B6.A-Chr19 both 134.0 9.2227 152.1416 115.8584
B6.A-Chr2 both 172.1875 9.2227 190.3291 154.0459
B6.A-Chr3 both 119.3125 9.2227 137.4541 101.1709
B6.A-Chr4 both 112.1875 9.2227 130.3291 94.0459
B6.A-Chr5 both 135.75 9.2227 153.8916 117.6084
B6.A-Chr6 both 91.8125 9.2227 109.9541 73.6709
B6.A-Chr7 both 129.125 9.2227 147.2666 110.9834
B6.A-Chr8 both 101.5625 9.2227 119.7041 83.4209
B6.A-Chr9 both 143.125 9.2227 161.2666 124.9834
B6.A-ChrX both 167.75 9.2227 185.8916 149.6084
B6.A-ChrY both 140.5625 9.2227 158.7041 122.4209
C57BL/6J both 125.3438 7.9871 141.0548 109.6327




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA