Project measure / variable:   Donahue2   femur_width_AP

ID, description, units MPD:17214   femur_width_AP   anterior to posterior, rostral to caudal, width of right femur, mid-diaphysis   [mm]  
Data set, strains Donahue2   inbred   10 strains     sex: both     age: 16wks
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  STRAIN COMPARISON PLOT
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Donahue2 - anterior to posterior, rostral to caudal, width of right femur, mid-diaphysis



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1.18   mm 1.24   mm
Median of the strain means1.19   mm 1.24   mm
SD of the strain means± 0.0629 ± 0.106
Coefficient of variation (CV)0.0534 0.0856
Min–max range of strain means1.08   –   1.26   mm 1.00   –   1.37   mm
Mean sample size per strain10.0   mice 11.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1947 0.1947 23.9855 < 0.0001
strain 9 1.19 0.1322 16.2926 < 0.0001
sex:strain 9 0.3209 0.0357 4.3938 < 0.0001
Residuals 192 1.5582 0.0081


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.23 0.0483   10 0.0153 0.0393 1.13, 1.29 0.83
129S1/SvImJ m 1.21 0.0428   15 0.011 0.0353 1.17, 1.3 -0.24
BALB/cJ f 1.26 0.193   10 0.0611 0.153 1.12, 1.61 1.3
BALB/cJ m 1.25 0.151   10 0.0476 0.12 1.11, 1.53 0.14
C3H/HeJ f 1.11 0.087   9 0.029 0.0785 0.98, 1.23 -1.08
C3H/HeJ m 1.26 0.0479   11 0.0144 0.038 1.2, 1.36 0.24
C57BL/6J f 1.22 0.0711   10 0.0225 0.0581 1.09, 1.32 0.67
C57BL/6J m 1.37 0.0884   12 0.0255 0.0645 1.19, 1.54 1.28
C58/J f 1.21 0.0736   10 0.0233 0.061 1.07, 1.3 0.51
C58/J m 1.23 0.0824   10 0.026 0.0667 1.06, 1.32 -0.05
FVB/NJ f 1.16 0.158   11 0.0476 0.137 0.88, 1.34 -0.29
FVB/NJ m 1.32 0.0367   9 0.0122 0.0278 1.27, 1.39 0.8
NZB/BlNJ f 1.24 0.0552   11 0.0166 0.0446 1.19, 1.36 0.99
NZB/BlNJ m 1.34 0.0692   13 0.0192 0.0516 1.24, 1.45 0.99
PWK/PhJ f 1.08 0.0283   12 0.00818 0.0263 1.03, 1.13 -1.56
PWK/PhJ m 1.0 0.148   11 0.0445 0.147 0.75, 1.15 -2.22
SJL/J f 1.16 0.0637   8 0.0225 0.0551 1.05, 1.24 -0.29
SJL/J m 1.22 0.0562   11 0.017 0.0462 1.13, 1.34 -0.14
SWR/J f 1.11 0.03   9 0.01 0.0271 1.06, 1.15 -1.08
SWR/J m 1.15 0.0233   10 0.00737 0.0203 1.12, 1.19 -0.8


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.23 0.0285 1.2862 1.1738
129S1/SvImJ m 1.21 0.0233 1.2559 1.1641
BALB/cJ f 1.261 0.0285 1.3172 1.2048
BALB/cJ m 1.254 0.0285 1.3102 1.1978
C3H/HeJ f 1.1078 0.03 1.167 1.0485
C3H/HeJ m 1.2618 0.0272 1.3154 1.2082
C57BL/6J f 1.224 0.0285 1.2802 1.1678
C57BL/6J m 1.3708 0.026 1.4221 1.3195
C58/J f 1.207 0.0285 1.2632 1.1508
C58/J m 1.235 0.0285 1.2912 1.1788
FVB/NJ f 1.1564 0.0272 1.2099 1.1028
FVB/NJ m 1.32 0.03 1.3792 1.2608
NZB/BlNJ f 1.2391 0.0272 1.2927 1.1855
NZB/BlNJ m 1.3408 0.025 1.3901 1.2915
PWK/PhJ f 1.0775 0.026 1.1288 1.0262
PWK/PhJ m 1.0018 0.0272 1.0554 0.9482
SJL/J f 1.1563 0.0319 1.2191 1.0934
SJL/J m 1.2173 0.0272 1.2708 1.1637
SWR/J f 1.1067 0.03 1.1659 1.0474
SWR/J m 1.151 0.0285 1.2072 1.0948


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.22 0.0184 1.2563 1.1837
BALB/cJ both 1.2575 0.0201 1.2972 1.2178
C3H/HeJ both 1.1848 0.0202 1.2247 1.1449
C57BL/6J both 1.2974 0.0193 1.3355 1.2594
C58/J both 1.221 0.0201 1.2607 1.1813
FVB/NJ both 1.2382 0.0202 1.2781 1.1983
NZB/BlNJ both 1.2899 0.0185 1.3263 1.2535
PWK/PhJ both 1.0397 0.0188 1.0767 1.0026
SJL/J both 1.1868 0.0209 1.228 1.1455
SWR/J both 1.1288 0.0207 1.1697 1.088




  GWAS USING LINEAR MIXED MODELS