Project measure / variable:   Jaxwest1   pct_fat

ID, description, units MPD:15126   pct_fat   percent fat, head excluded   [%]  
Data set, strains Jaxwest1   inbred   7 strains     sex: both     age: 11-13wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxwest1 - percent fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means15.6   % 15.3   %
Median of the strain means14.8   % 14.1   %
SD of the strain means± 3.90 ± 3.17
Coefficient of variation (CV)0.249 0.207
Min–max range of strain means12.3   –   23.5   % 12.3   –   19.6   %
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.7751 4.7751 0.8932 0.347
strain 6 1087.413 181.2355 33.8991 < 0.0001
sex:strain 6 100.1132 16.6855 3.1209 0.0077
Residuals 97 518.5936 5.3463


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.8 1.17   8 0.415 0.0796 13.0, 16.7 -0.22
129S1/SvImJ m 16.1 2.9   8 1.03 0.181 12.7, 21.4 0.25
A/J f 23.5 2.42   8 0.857 0.103 20.1, 27.1 2.01
A/J m 19.5 1.47   8 0.52 0.0755 17.5, 21.7 1.33
BALB/cJ f 15.0 2.46   8 0.871 0.165 10.6, 18.1 -0.16
BALB/cJ m 12.9 1.52   8 0.538 0.118 10.5, 15.7 -0.76
C57BL/6J f 13.4 2.69   8 0.95 0.201 9.96, 17.8 -0.57
C57BL/6J m 14.1 2.3   8 0.815 0.163 11.5, 17.6 -0.38
DBA/2J f 17.7 3.67   8 1.3 0.207 13.5, 24.1 0.53
DBA/2J m 19.6 2.75   7 1.04 0.141 15.6, 23.5 1.36
NOD/ShiLtJ f 12.3 2.28   8 0.807 0.186 8.07, 15.8 -0.86
NOD/ShiLtJ m 12.3 1.52   8 0.538 0.124 9.07, 14.2 -0.95
SJL/J f 12.8 1.69   8 0.597 0.132 9.41, 15.1 -0.73
SJL/J m 12.6 2.24   8 0.793 0.178 9.93, 15.7 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.7625 0.8175 16.385 13.14
129S1/SvImJ m 16.05 0.8175 17.6725 14.4275
A/J f 23.475 0.8175 25.0975 21.8525
A/J m 19.475 0.8175 21.0975 17.8525
BALB/cJ f 14.9625 0.8175 16.585 13.34
BALB/cJ m 12.875 0.8175 14.4975 11.2525
C57BL/6J f 13.3575 0.8175 14.98 11.735
C57BL/6J m 14.1 0.8175 15.7225 12.4775
DBA/2J f 17.6875 0.8175 19.31 16.065
DBA/2J m 19.5714 0.8739 21.3059 17.8369
NOD/ShiLtJ f 12.2838 0.8175 13.9062 10.6613
NOD/ShiLtJ m 12.2962 0.8175 13.9187 10.6738
SJL/J f 12.8388 0.8175 14.4612 11.2163
SJL/J m 12.6412 0.8175 14.2637 11.0188


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.4062 0.5781 16.5535 14.259
A/J both 21.475 0.5781 22.6223 20.3277
BALB/cJ both 13.9188 0.5781 15.066 12.7715
C57BL/6J both 13.7287 0.5781 14.876 12.5815
DBA/2J both 18.6295 0.5983 19.817 17.4419
NOD/ShiLtJ both 12.29 0.5781 13.4373 11.1427
SJL/J both 12.74 0.5781 13.8873 11.5927




  GWAS USING LINEAR MIXED MODELS