Project measure / variable:   Naggert1   fatwt_fat8

ID, description, units MPD:14317   fatwt_fat8   weight of fat portion of tissue mass, head excluded   [g]  
high-fat diet study
Data set, strains Naggert1   inbred w/CC7   41 strains     sex: both     age: 15-17wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Naggert1 - weight of fat portion of tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains38 strains
Mean of the strain means5.32   g 6.81   g
Median of the strain means4.94   g 6.00   g
SD of the strain means± 2.50 ± 3.40
Coefficient of variation (CV)0.470 0.499
Min–max range of strain means1.71   –   13.4   g 1.58   –   15.8   g
Mean sample size per strain9.8   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 322.6707 322.6707 110.9695 < 0.0001
strain 35 6272.0349 179.201 61.6289 < 0.0001
sex:strain 35 785.7915 22.4512 7.7212 < 0.0001
Residuals 638 1855.1404 2.9077


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.94 0.393   8 0.139 0.0796 4.22, 5.44 -0.15
129S1/SvImJ m 9.94 1.95   10 0.616 0.196 6.76, 12.8 0.92
A/J f 5.28 0.681   10 0.216 0.129 4.45, 6.54 -0.02
A/J m 5.4 1.42   10 0.448 0.262 3.43, 8.38 -0.42
AKR/J f 13.4 3.54   18 0.835 0.265 5.5, 18.8 3.23
AKR/J m 15.1 3.3   17 0.801 0.218 8.82, 21.5 2.44
BALB/cByJ m 5.56 1.27   9 0.425 0.229 3.0, 7.59 -0.37
BALB/cJ f 6.02 0.872   9 0.291 0.145 4.88, 7.53 0.28
BALB/cJ m 5.35 0.944   10 0.298 0.176 4.15, 6.97 -0.43
BTBR T+ Itpr3tf/J f 7.74 1.32   10 0.416 0.17 5.54, 9.37 0.97
BTBR T+ Itpr3tf/J m 12.0 2.4   10 0.76 0.2 8.14, 15.8 1.53
BUB/BnJ f 4.94 1.46   12 0.422 0.296 2.69, 7.51 -0.15
BUB/BnJ m 6.64 1.03   8 0.365 0.155 5.3, 8.03 -0.05
C3H/HeJ f 5.11 1.69   10 0.533 0.33 2.97, 7.5 -0.08
C3H/HeJ m 9.06 2.42   10 0.766 0.267 6.62, 14.2 0.66
C57BL/10J f 3.65 0.93   9 0.31 0.255 2.98, 6.0 -0.67
C57BL/10J m 6.29 1.17   12 0.337 0.186 4.86, 9.06 -0.15
C57BL/6J f 3.42 0.612   10 0.194 0.179 2.86, 4.95 -0.76
C57BL/6J m 3.17 0.217   10 0.0687 0.0684 2.89, 3.49 -1.07
C57BLKS/J f 4.88 0.843   12 0.243 0.173 3.24, 5.88 -0.18
C57BLKS/J m 6.03 1.13   10 0.357 0.187 4.61, 8.12 -0.23
C57BR/cdJ f 3.82 0.903   12 0.261 0.237 3.03, 5.86 -0.6
C57BR/cdJ m 8.07 2.28   10 0.721 0.282 4.09, 11.3 0.37
C57L/J f 3.47 1.09   10 0.345 0.315 2.48, 5.72 -0.74
C57L/J m 5.64 1.57   10 0.498 0.279 3.07, 7.31 -0.35
C58/J f 3.41 0.408   11 0.123 0.12 2.94, 4.32 -0.76
C58/J m 3.51 0.5   9 0.167 0.142 2.84, 4.28 -0.97
CAST/EiJ f 2.49 0.469   9 0.156 0.188 1.9, 3.33 -1.13
CAST/EiJ m 3.01 1.02   8 0.362 0.34 1.86, 4.47 -1.12
CBA/J f 9.76 1.72   10 0.545 0.177 7.21, 12.4 1.78
CBA/J m 12.0 2.1   8 0.744 0.175 9.2, 15.4 1.53
CZECHII/EiJ f 1.96 0.599   16 0.15 0.305 1.39, 3.64 -1.34
CZECHII/EiJ m 2.61 0.555   11 0.167 0.213 1.69, 3.3 -1.24
DBA/1J f 4.86 0.929   12 0.268 0.191 3.35, 6.48 -0.18
DBA/1J m 5.93 1.91   7 0.723 0.322 3.79, 8.81 -0.26
DBA/2J f 6.14 1.3   9 0.434 0.212 3.87, 7.78 0.33
DBA/2J m 9.82 2.4   9 0.8 0.244 6.41, 14.4 0.88
FVB/NJ f 5.98 1.16   9 0.385 0.193 4.13, 7.98 0.26
FVB/NJ m 5.4 0.996   10 0.315 0.185 4.24, 7.57 -0.42
I/LnJ f 4.8 0.721   9 0.24 0.15 3.83, 5.69 -0.21
I/LnJ m 4.78 1.11   12 0.32 0.232 3.36, 6.9 -0.6
JF1/MsJ f 6.66 1.98   10 0.627 0.298 3.41, 10.7 0.54
JF1/MsJ m 8.08 2.06   7 0.778 0.255 4.46, 9.88 0.37
KK/HlJ f 6.8 5.24   8 1.85 0.771 3.99, 19.3 0.59
KK/HlJ m 15.8 2.72   9 0.907 0.172 11.9, 19.4 2.64
LP/J f 7.21 1.67   9 0.555 0.231 5.31, 10.2 0.76
LP/J m 11.5 2.7   9 0.899 0.234 6.22, 16.0 1.38
MA/MyJ f 5.44 1.33   9 0.445 0.245 4.13, 8.03 0.05
MA/MyJ m 6.1 2.09   10 0.661 0.343 3.58, 9.3 -0.21
MOLF/EiJ f 1.76 0.332   7 0.126 0.189 1.3, 2.13 -1.42
MOLF/EiJ m 2.17 0.467   7 0.176 0.215 1.73, 3.08 -1.37
MSM/MsJ f 2.86 0.541   8 0.191 0.189 1.89, 3.63 -0.98
MSM/MsJ m 4.72 1.53   12 0.441 0.324 2.15, 6.35 -0.62
NOD/ShiLtJ f 5.47 1.56   15 0.403 0.285 3.23, 8.67 0.06
NOD/ShiLtJ m 5.64 1.58   8 0.558 0.28 3.3, 8.93 -0.35
NON/ShiLtJ f 10.5 2.28   10 0.722 0.218 6.59, 13.3 2.07
NON/ShiLtJ m 7.77 1.15   10 0.365 0.148 6.38, 9.47 0.28
NZB/BlNJ m 8.94 2.79   10 0.883 0.312 4.37, 12.3 0.63
NZW/LacJ f 9.47 1.65   10 0.521 0.174 6.47, 12.2 1.66
NZW/LacJ m 9.88 2.96   10 0.936 0.3 4.83, 13.2 0.9
PERA/EiJ f 7.56 1.25   9 0.416 0.165 4.83, 9.29 0.9
PERA/EiJ m 6.58 1.67   9 0.556 0.254 4.91, 9.86 -0.07
PL/J f 2.5 1.0   10 0.317 0.402 1.61, 4.48 -1.13
PWK/PhJ f 3.97 0.974   7 0.368 0.245 2.06, 5.08 -0.54
RIIIS/J f 4.03 0.664   9 0.221 0.165 3.09, 4.89 -0.52
SEA/GnJ f 7.58 1.77   9 0.591 0.234 6.18, 11.9 0.9
SEA/GnJ m 7.58 0.873   10 0.276 0.115 6.39, 9.57 0.23
SJL/J f 4.87 1.1   9 0.366 0.225 3.29, 7.12 -0.18
SJL/J m 5.96 1.56   15 0.402 0.261 3.85, 9.71 -0.25
SM/J f 4.48 0.799   9 0.266 0.178 2.92, 5.6 -0.34
SM/J m 5.43 2.11   9 0.704 0.389 2.68, 9.01 -0.41
SPRET/EiJ f 5.01 2.9   4 1.45 0.579 2.22, 8.95 -0.12
SPRET/EiJ m 2.21 0.298   6 0.122 0.135 1.68, 2.53 -1.35
SWR/J f 3.52 0.439   10 0.139 0.125 2.88, 4.3 -0.72
SWR/J m 3.68 0.962   10 0.304 0.261 2.07, 5.18 -0.92
WSB/EiJ f 1.71 0.311   8 0.11 0.183 1.43, 2.38 -1.44
WSB/EiJ m 1.58 0.207   9 0.0689 0.131 1.27, 1.88 -1.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.9397 0.6029 6.1236 3.7559
129S1/SvImJ m 9.9435 0.5392 11.0024 8.8846
A/J f 5.2842 0.5392 6.3431 4.2253
A/J m 5.4043 0.5392 6.4632 4.3454
AKR/J f 13.3703 0.4019 14.1596 12.5811
AKR/J m 15.1345 0.4136 15.9466 14.3223
BALB/cJ f 6.0186 0.5684 7.1347 4.9024
BALB/cJ m 5.3496 0.5392 6.4085 4.2907
BTBR T+ Itpr3tf/J f 7.7377 0.5392 8.7966 6.6788
BTBR T+ Itpr3tf/J m 12.0208 0.5392 13.0797 10.9619
BUB/BnJ f 4.9407 0.4923 5.9073 3.974
BUB/BnJ m 6.6445 0.6029 7.8284 5.4606
C3H/HeJ f 5.112 0.5392 6.1709 4.0531
C3H/HeJ m 9.0608 0.5392 10.1197 8.0019
C57BL/10J f 3.6486 0.5684 4.7647 2.5324
C57BL/10J m 6.2891 0.4923 7.2557 5.3225
C57BL/6J f 3.4229 0.5392 4.4818 2.364
C57BL/6J m 3.1731 0.5392 4.232 2.1142
C57BLKS/J f 4.8813 0.4923 5.848 3.9147
C57BLKS/J m 6.0273 0.5392 7.0862 4.9684
C57BR/cdJ f 3.8184 0.4923 4.785 2.8518
C57BR/cdJ m 8.0708 0.5392 9.1297 7.0119
C57L/J f 3.468 0.5392 4.5269 2.4091
C57L/J m 5.6424 0.5392 6.7013 4.5835
C58/J f 3.4105 0.5141 4.4201 2.4008
C58/J m 3.5127 0.5684 4.6288 2.3965
CAST/EiJ f 2.4949 0.5684 3.6111 1.3787
CAST/EiJ m 3.0083 0.6029 4.1921 1.8244
CBA/J f 9.756 0.5392 10.8149 8.6971
CBA/J m 12.0352 0.6029 13.2191 10.8514
CZECHII/EiJ f 1.9649 0.4263 2.8021 1.1278
CZECHII/EiJ m 2.6072 0.5141 3.6168 1.5976
DBA/1J f 4.8633 0.4923 5.83 3.8967
DBA/1J m 5.9347 0.6445 7.2003 4.6691
DBA/2J f 6.1419 0.5684 7.2581 5.0257
DBA/2J m 9.8232 0.5684 10.9394 8.7071
FVB/NJ f 5.9766 0.5684 7.0927 4.8604
FVB/NJ m 5.3957 0.5392 6.4546 4.3368
I/LnJ f 4.7979 0.5684 5.9141 3.6817
I/LnJ m 4.784 0.4923 5.7506 3.8174
JF1/MsJ f 6.6587 0.5392 7.7176 5.5998
JF1/MsJ m 8.0814 0.6445 9.347 6.8158
KK/HlJ f 6.8001 0.6029 7.984 5.6163
KK/HlJ m 15.8057 0.5684 16.9218 14.6895
LP/J f 7.2064 0.5684 8.3226 6.0903
LP/J m 11.5429 0.5684 12.6591 10.4267
MA/MyJ f 5.4382 0.5684 6.5544 4.3221
MA/MyJ m 6.103 0.5392 7.1619 5.0441
MOLF/EiJ f 1.7591 0.6445 3.0248 0.4935
MOLF/EiJ m 2.1717 0.6445 3.4373 0.9061
MSM/MsJ f 2.8566 0.6029 4.0405 1.6728
MSM/MsJ m 4.7214 0.4923 5.688 3.7548
NOD/ShiLtJ f 5.4698 0.4403 6.3344 4.6052
NOD/ShiLtJ m 5.6431 0.6029 6.827 4.4593
NON/ShiLtJ f 10.4569 0.5392 11.5158 9.398
NON/ShiLtJ m 7.7747 0.5392 8.8336 6.7158
NZW/LacJ f 9.4717 0.5392 10.5306 8.4128
NZW/LacJ m 9.8802 0.5392 10.9391 8.8213
PERA/EiJ f 7.5609 0.5684 8.6771 6.4447
PERA/EiJ m 6.5796 0.5684 7.6957 5.4634
SEA/GnJ f 7.5817 0.5684 8.6978 6.4655
SEA/GnJ m 7.5773 0.5392 8.6362 6.5184
SJL/J f 4.8714 0.5684 5.9876 3.7553
SJL/J m 5.9615 0.4403 6.826 5.0969
SM/J f 4.4792 0.5684 5.5954 3.3631
SM/J m 5.4293 0.5684 6.5455 4.3132
SPRET/EiJ f 5.013 0.8526 6.6873 3.3387
SPRET/EiJ m 2.2058 0.6961 3.5729 0.8388
SWR/J f 3.5219 0.5392 4.5808 2.463
SWR/J m 3.68 0.5392 4.7389 2.6211
WSB/EiJ f 1.7061 0.6029 2.89 0.5223
WSB/EiJ m 1.5759 0.5684 2.6921 0.4597


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.4416 0.4044 8.2358 6.6475
A/J both 5.3442 0.3813 6.093 4.5955
AKR/J both 14.2524 0.2884 14.8186 13.6862
BALB/cJ both 5.6841 0.3917 6.4533 4.9148
BTBR T+ Itpr3tf/J both 9.8792 0.3813 10.628 9.1305
BUB/BnJ both 5.7926 0.3892 6.5568 5.0284
C3H/HeJ both 7.0864 0.3813 7.8351 6.3377
C57BL/10J both 4.9688 0.376 5.7071 4.2305
C57BL/6J both 3.298 0.3813 4.0467 2.5493
C57BLKS/J both 5.4543 0.3651 6.1712 4.7374
C57BR/cdJ both 5.9446 0.3651 6.6615 5.2277
C57L/J both 4.5552 0.3813 5.3039 3.8065
C58/J both 3.4616 0.3832 4.2141 2.709
CAST/EiJ both 2.7516 0.4143 3.5651 1.938
CBA/J both 10.8956 0.4044 11.6898 10.1015
CZECHII/EiJ both 2.2861 0.3339 2.9418 1.6303
DBA/1J both 5.399 0.4055 6.1953 4.6028
DBA/2J both 7.9826 0.4019 8.7718 7.1933
FVB/NJ both 5.6861 0.3917 6.4554 4.9169
I/LnJ both 4.7909 0.376 5.5292 4.0527
JF1/MsJ both 7.3701 0.4202 8.1951 6.545
KK/HlJ both 11.3029 0.4143 12.1164 10.4894
LP/J both 9.3747 0.4019 10.1639 8.5854
MA/MyJ both 5.7706 0.3917 6.5399 5.0013
MOLF/EiJ both 1.9654 0.4557 2.8604 1.0705
MSM/MsJ both 3.789 0.3892 4.5532 3.0248
NOD/ShiLtJ both 5.5565 0.3733 6.2894 4.8235
NON/ShiLtJ both 9.1158 0.3813 9.8645 8.3671
NZW/LacJ both 9.6759 0.3813 10.4247 8.9272
PERA/EiJ both 7.0702 0.4019 7.8595 6.281
SEA/GnJ both 7.5795 0.3917 8.3487 6.8102
SJL/J both 5.4165 0.3595 6.1224 4.7105
SM/J both 4.9543 0.4019 5.7435 4.165
SPRET/EiJ both 3.6094 0.5504 4.6901 2.5287
SWR/J both 3.601 0.3813 4.3497 2.8522
WSB/EiJ both 1.641 0.4143 2.4545 0.8275




  GWAS USING LINEAR MIXED MODELS