Project measure / variable:   Justice2   pctB

ID, description, units MPD:13218   pctB   basophil differential (BASO; percentage of total WBC)   [%]  
Data set, strains Justice2   inbred   16 strains     sex: both     age: 12-16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Justice2 - basophil differential (BASO; percentage of total WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested16 strains16 strains
Mean of the strain means0.275   % 0.302   %
Median of the strain means0.257   % 0.236   %
SD of the strain means± 0.245 ± 0.273
Coefficient of variation (CV)0.892 0.903
Min–max range of strain means0.0400   –   0.973   % 0   –   0.957   %
Mean sample size per strain12.6   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.166 0.166 0.8406 0.3598
strain 15 23.6813 1.5788 7.9961 < 0.0001
sex:strain 15 2.9767 0.1984 1.0051 0.4489
Residuals 366 72.263 0.1974


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0533 0.0915   15 0.0236 1.72 -0.9
129S1/SvImJ m 0.1 0.125   15 0.0324 1.25 -0.74
129S6/SvEvTac f 0.04 0.0699   10 0.0221 1.75 -0.96
129S6/SvEvTac m 0.0 0.0   10 0.0 0.0 -1.11
A/J f 0.16 0.178   10 0.0562 1.11 -0.47
A/J m 0.0375 0.0744   8 0.0263 1.98 -0.97
BALB/cByJ f 0.253 0.196   15 0.0506 0.773 -0.09
BALB/cByJ m 0.173 0.222   15 0.0573 1.28 -0.47
BALB/cJ f 0.27 0.211   10 0.0667 0.782 -0.02
BALB/cJ m 0.122 0.139   9 0.0465 1.14 -0.66
BTBR T+ Itpr3tf/J f 0.61 0.423   10 0.134 0.693 0.1, 1.6 1.37
BTBR T+ Itpr3tf/J m 0.44 0.35   10 0.111 0.796 0.5
C3HeB/FeJ f 0.13 0.16   15 0.0414 1.23 -0.59
C3HeB/FeJ m 0.32 0.382   15 0.0987 1.19 0.06
C3H/HeJ f 0.4 0.447   10 0.141 1.12 0.51
C3H/HeJ m 0.29 0.202   10 0.064 0.698 -0.05
C57BL/10J f 0.131 0.272   13 0.0754 2.08 -0.59
C57BL/10J m 0.187 0.2   15 0.0515 1.07 -0.42
C57BL/6J f 0.26 0.196   15 0.0505 0.753 -0.06
C57BL/6J m 0.379 0.449   14 0.12 1.19 0.28
CAST/EiJ f 0.05 0.0527   10 0.0167 1.05 -0.92
CAST/EiJ m 0.133 0.194   9 0.0645 1.45 -0.62
CBA/CaJ f 0.307 0.237   14 0.0633 0.771 0.1, 0.8 0.13
CBA/CaJ m 0.871 0.701   14 0.187 0.804 2.08
CBA/J f 0.41 0.545   10 0.172 1.33 0.55
CBA/J m 0.422 0.708   9 0.236 1.68 0.44
DBA/2J f 0.973 1.35   15 0.348 1.38 2.85
DBA/2J m 0.957 1.07   14 0.285 1.12 2.4
FVB/NJ f 0.04 0.0507   15 0.0131 1.27 -0.96
FVB/NJ m 0.12 0.214   15 0.0554 1.79 -0.67
SJL/J f 0.313 0.327   15 0.0844 1.04 0.15
SJL/J m 0.286 0.321   14 0.0857 1.12 -0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0533 0.1147 0.2789 -0.1723
129S1/SvImJ m 0.1 0.1147 0.3256 -0.1256
129S6/SvEvTac f 0.04 0.1405 0.3163 -0.2363
129S6/SvEvTac m 0.0 0.1405 0.2763 -0.2763
A/J f 0.16 0.1405 0.4363 -0.1163
A/J m 0.0375 0.1571 0.3464 -0.2714
BALB/cByJ f 0.2533 0.1147 0.4789 0.0277
BALB/cByJ m 0.1733 0.1147 0.3989 -0.0523
BALB/cJ f 0.27 0.1405 0.5463 -0.0063
BALB/cJ m 0.1222 0.1481 0.4135 -0.169
BTBR T+ Itpr3tf/J f 0.61 0.1405 0.8863 0.3337
BTBR T+ Itpr3tf/J m 0.44 0.1405 0.7163 0.1637
C3HeB/FeJ f 0.13 0.1147 0.3556 -0.0956
C3HeB/FeJ m 0.32 0.1147 0.5456 0.0944
C3H/HeJ f 0.4 0.1405 0.6763 0.1237
C3H/HeJ m 0.29 0.1405 0.5663 0.0137
C57BL/10J f 0.1308 0.1232 0.3731 -0.1116
C57BL/10J m 0.1867 0.1147 0.4123 -0.0389
C57BL/6J f 0.26 0.1147 0.4856 0.0344
C57BL/6J m 0.3786 0.1188 0.6121 0.145
CAST/EiJ f 0.05 0.1405 0.3263 -0.2263
CAST/EiJ m 0.1333 0.1481 0.4246 -0.1579
CBA/CaJ f 0.3071 0.1188 0.5407 0.0736
CBA/CaJ m 0.8714 0.1188 1.105 0.6379
CBA/J f 0.41 0.1405 0.6863 0.1337
CBA/J m 0.4222 0.1481 0.7135 0.131
DBA/2J f 0.9733 0.1147 1.1989 0.7477
DBA/2J m 0.9571 0.1188 1.1907 0.7236
FVB/NJ f 0.04 0.1147 0.2656 -0.1856
FVB/NJ m 0.12 0.1147 0.3456 -0.1056
SJL/J f 0.3133 0.1147 0.5389 0.0877
SJL/J m 0.2857 0.1188 0.5192 0.0522


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0767 0.0811 0.2362 -0.0829
129S6/SvEvTac both 0.02 0.0994 0.2154 -0.1754
A/J both 0.0988 0.1054 0.306 -0.1085
BALB/cByJ both 0.2133 0.0811 0.3729 0.0538
BALB/cJ both 0.1961 0.1021 0.3968 -0.0046
BTBR T+ Itpr3tf/J both 0.525 0.0994 0.7204 0.3296
C3HeB/FeJ both 0.225 0.0811 0.3845 0.0655
C3H/HeJ both 0.345 0.0994 0.5404 0.1496
C57BL/10J both 0.1587 0.0842 0.3243 -0.0068
C57BL/6J both 0.3193 0.0826 0.4816 0.1569
CAST/EiJ both 0.0917 0.1021 0.2924 -0.1091
CBA/CaJ both 0.5893 0.084 0.7544 0.4242
CBA/J both 0.4161 0.1021 0.6168 0.2154
DBA/2J both 0.9652 0.0826 1.1276 0.8029
FVB/NJ both 0.08 0.0811 0.2395 -0.0795
SJL/J both 0.2995 0.0826 0.4619 0.1372




  GWAS USING LINEAR MIXED MODELS