Project measure / variable:   Donahue1   pct_fat

ID, description, units MPD:11515   pct_fat   percentage of body mass that is fat, head excluded   [%]  
Data set, strains Donahue1   inbred w/CC7   30 strains     sex: both     age: 15-16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Donahue1 - percentage of body mass that is fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means18.9   % 19.2   %
Median of the strain means17.8   % 18.3   %
SD of the strain means± 4.85 ± 5.23
Coefficient of variation (CV)0.257 0.273
Min–max range of strain means13.2   –   31.5   % 11.9   –   35.2   %
Mean sample size per strain10.2   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11.6803 11.6803 0.9694 0.3253
strain 29 11620.2698 400.699 33.2548 < 0.0001
sex:strain 29 3310.0992 114.1414 9.4728 < 0.0001
Residuals 547 6590.9962 12.0494


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 16.1 1.53   10 0.485 0.0953 12.4, 17.8 -0.57
129S1/SvImJ m 21.1 3.32   10 1.05 0.157 15.6, 27.9 0.37
129X1/SvJ f 20.1 2.41   10 0.763 0.12 17.4, 24.8 0.25
129X1/SvJ m 22.8 2.32   10 0.734 0.102 18.8, 26.4 0.69
A/J f 22.1 4.73   10 1.5 0.214 17.2, 30.6 0.66
A/J m 24.1 3.58   10 1.13 0.149 17.9, 28.9 0.94
AKR/J f 31.5 4.72   10 1.49 0.15 25.3, 39.2 2.6
AKR/J m 28.8 3.78   10 1.2 0.131 21.8, 35.8 1.84
BALB/cJ f 22.3 3.86   10 1.22 0.173 17.8, 30.7 0.7
BALB/cJ m 16.6 2.95   10 0.934 0.177 11.5, 21.1 -0.49
BTBR T+ Itpr3tf/J f 15.8 1.74   9 0.581 0.11 13.8, 18.5 -0.64
BTBR T+ Itpr3tf/J m 15.5 2.66   10 0.841 0.171 11.9, 19.8 -0.7
BUB/BnJ f 15.4 2.23   10 0.704 0.144 10.9, 18.5 -0.72
BUB/BnJ m 14.1 3.54   10 1.12 0.251 8.5, 20.3 -0.97
C3H/HeJ f 23.3 3.22   10 1.02 0.139 17.8, 28.3 0.91
C3H/HeJ m 23.6 3.2   10 1.01 0.136 18.7, 27.3 0.85
C57BL/6J f 15.2 2.83   10 0.896 0.186 11.7, 20.3 -0.76
C57BL/6J m 16.7 3.89   10 1.23 0.233 12.9, 22.4 -0.47
C57L/J f 15.7 3.69   10 1.17 0.235 12.1, 24.5 -0.66
C57L/J m 19.5 5.34   10 1.69 0.273 12.5, 30.0 0.06
C58/J f 13.4 4.21   10 1.33 0.314 8.9, 18.9 -1.13
C58/J m 22.1 3.49   9 1.16 0.158 14.1, 26.3 0.56
CAST/EiJ f 14.0 1.8   10 0.569 0.129 11.8, 16.8 -1.01
CAST/EiJ m 14.3 1.79   10 0.567 0.125 11.4, 17.9 -0.93
CZECHII/EiJ f 15.5 3.07   12 0.887 0.198 12.3, 24.4 -0.7
CZECHII/EiJ m 13.9 2.06   12 0.595 0.148 9.9, 16.6 -1.01
DBA/2J f 22.5 4.35   10 1.38 0.194 14.3, 29.3 0.75
DBA/2J m 23.9 4.11   10 1.3 0.172 16.3, 29.6 0.9
FVB/NJ f 20.8 3.15   10 0.995 0.151 16.7, 25.4 0.39
FVB/NJ m 14.5 3.46   10 1.09 0.238 10.1, 20.6 -0.89
JF1/MsJ f 21.7 4.69   11 1.41 0.216 14.9, 27.8 0.58
JF1/MsJ m 35.2 7.26   10 2.3 0.207 20.6, 44.0 3.06
MOLF/EiJ f 13.2 1.08   10 0.343 0.0821 11.7, 14.8 -1.17
MOLF/EiJ m 13.8 3.17   8 1.12 0.23 7.9, 17.9 -1.03
MSM/MsJ f 15.9 2.8   11 0.845 0.176 11.0, 21.0 -0.62
MSM/MsJ m 15.1 1.95   9 0.652 0.129 12.4, 18.7 -0.78
NOD/ShiLtJ f 13.8 3.16   10 0.999 0.228 8.9, 17.9 -1.05
NOD/ShiLtJ m 14.7 1.89   10 0.599 0.129 11.8, 17.8 -0.85
NZB/BlNJ f 17.8 3.63   10 1.15 0.204 12.4, 23.1 -0.22
NZB/BlNJ m 16.3 4.89   10 1.55 0.3 10.7, 24.5 -0.55
NZW/LacJ f 28.4 4.82   10 1.52 0.17 22.5, 36.6 1.96
NZW/LacJ m 18.2 5.12   10 1.62 0.28 12.0, 27.4 -0.18
PERA/EiJ f 27.2 3.16   10 0.999 0.116 22.6, 33.3 1.71
PERA/EiJ m 18.4 2.51   10 0.793 0.136 14.9, 21.5 -0.15
PL/J f 19.6 3.37   10 1.07 0.172 16.7, 27.8 0.15
PL/J m 19.7 2.23   11 0.674 0.113 16.6, 22.9 0.1
PWK/PhJ f 13.6 1.28   13 0.356 0.0944 11.9, 15.9 -1.09
PWK/PhJ m 19.4 5.63   9 1.88 0.29 13.0, 31.4 0.04
SEA/GnJ f 24.5 5.07   14 1.36 0.207 16.0, 31.2 1.16
SEA/GnJ m 26.6 3.97   10 1.25 0.149 18.3, 32.5 1.42
SJL/J f 17.7 2.32   10 0.732 0.131 14.1, 21.5 -0.24
SJL/J m 16.1 3.11   10 0.982 0.193 10.8, 19.9 -0.59
SM/J f 21.8 3.35   10 1.06 0.153 16.3, 26.3 0.6
SM/J m 20.1 2.23   10 0.705 0.111 15.6, 23.3 0.18
SPRET/EiJ f 18.6 2.45   9 0.817 0.132 15.7, 21.9 -0.06
SPRET/EiJ m 23.1 4.57   10 1.45 0.198 18.1, 28.6 0.75
SWR/J f 15.3 1.37   10 0.433 0.0895 12.9, 17.1 -0.74
SWR/J m 11.9 2.45   10 0.775 0.205 8.3, 15.6 -1.39
WSB/EiJ f 13.8 2.29   10 0.724 0.166 11.2, 18.3 -1.05
WSB/EiJ m 14.9 2.12   10 0.671 0.142 11.5, 18.6 -0.82


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 16.08 1.0977 18.2362 13.9238
129S1/SvImJ m 21.15 1.0977 23.3062 18.9938
129X1/SvJ f 20.11 1.0977 22.2662 17.9538
129X1/SvJ m 22.79 1.0977 24.9462 20.6338
A/J f 22.14 1.0977 24.2962 19.9838
A/J m 24.07 1.0977 26.2262 21.9138
AKR/J f 31.5 1.0977 33.6562 29.3438
AKR/J m 28.78 1.0977 30.9362 26.6238
BALB/cJ f 22.31 1.0977 24.4662 20.1538
BALB/cJ m 16.65 1.0977 18.8062 14.4938
BTBR T+ Itpr3tf/J f 15.8333 1.1571 18.1062 13.5605
BTBR T+ Itpr3tf/J m 15.51 1.0977 17.6662 13.3538
BUB/BnJ f 15.42 1.0977 17.5762 13.2638
BUB/BnJ m 14.12 1.0977 16.2762 11.9638
C3H/HeJ f 23.26 1.0977 25.4162 21.1038
C3H/HeJ m 23.6 1.0977 25.7562 21.4438
C57BL/6J f 15.24 1.0977 17.3962 13.0838
C57BL/6J m 16.66 1.0977 18.8162 14.5038
C57L/J f 15.73 1.0977 17.8862 13.5738
C57L/J m 19.52 1.0977 21.6762 17.3638
C58/J f 13.41 1.0977 15.5662 11.2538
C58/J m 22.0556 1.1571 24.3284 19.7827
CAST/EiJ f 13.96 1.0977 16.1162 11.8038
CAST/EiJ m 14.3 1.0977 16.4562 12.1438
CZECHII/EiJ f 15.5167 1.0021 17.485 13.5483
CZECHII/EiJ m 13.9083 1.0021 15.8767 11.94
DBA/2J f 22.49 1.0977 24.6462 20.3338
DBA/2J m 23.85 1.0977 26.0062 21.6938
FVB/NJ f 20.82 1.0977 22.9762 18.6638
FVB/NJ m 14.53 1.0977 16.6862 12.3738
JF1/MsJ f 21.6636 1.0466 23.7195 19.6078
JF1/MsJ m 35.17 1.0977 37.3262 33.0138
MOLF/EiJ f 13.2 1.0977 15.3562 11.0438
MOLF/EiJ m 13.7625 1.2273 16.1732 11.3518
MSM/MsJ f 15.9 1.0466 17.9559 13.8441
MSM/MsJ m 15.1222 1.1571 17.3951 12.8494
NOD/ShiLtJ f 13.84 1.0977 15.9962 11.6838
NOD/ShiLtJ m 14.72 1.0977 16.8762 12.5638
NZB/BlNJ f 17.82 1.0977 19.9762 15.6638
NZB/BlNJ m 16.26 1.0977 18.4162 14.1038
NZW/LacJ f 28.41 1.0977 30.5662 26.2538
NZW/LacJ m 18.25 1.0977 20.4062 16.0938
PERA/EiJ f 27.16 1.0977 29.3162 25.0038
PERA/EiJ m 18.38 1.0977 20.5362 16.2238
PL/J f 19.56 1.0977 21.7162 17.4038
PL/J m 19.7182 1.0466 21.7741 17.6623
PWK/PhJ f 13.6 0.9627 15.4911 11.7089
PWK/PhJ m 19.4444 1.1571 21.7173 17.1716
SEA/GnJ f 24.5071 0.9277 26.3295 22.6848
SEA/GnJ m 26.65 1.0977 28.8062 24.4938
SJL/J f 17.68 1.0977 19.8362 15.5238
SJL/J m 16.1 1.0977 18.2562 13.9438
SM/J f 21.84 1.0977 23.9962 19.6838
SM/J m 20.06 1.0977 22.2162 17.9038
SPRET/EiJ f 18.5778 1.1571 20.8506 16.3049
SPRET/EiJ m 23.1 1.0977 25.2562 20.9438
SWR/J f 15.3 1.0977 17.4562 13.1438
SWR/J m 11.95 1.0977 14.1062 9.7938
WSB/EiJ f 13.8 1.0977 15.9562 11.6438
WSB/EiJ m 14.94 1.0977 17.0962 12.7838


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.615 0.7762 20.1397 17.0903
129X1/SvJ both 21.45 0.7762 22.9747 19.9253
A/J both 23.105 0.7762 24.6297 21.5803
AKR/J both 30.14 0.7762 31.6647 28.6153
BALB/cJ both 19.48 0.7762 21.0047 17.9553
BTBR T+ Itpr3tf/J both 15.6717 0.7975 17.2381 14.1052
BUB/BnJ both 14.77 0.7762 16.2947 13.2453
C3H/HeJ both 23.43 0.7762 24.9547 21.9053
C57BL/6J both 15.95 0.7762 17.4747 14.4253
C57L/J both 17.625 0.7762 19.1497 16.1003
C58/J both 17.7328 0.7975 19.2992 16.1663
CAST/EiJ both 14.13 0.7762 15.6547 12.6053
CZECHII/EiJ both 14.7125 0.7086 16.1043 13.3207
DBA/2J both 23.17 0.7762 24.6947 21.6453
FVB/NJ both 17.675 0.7762 19.1997 16.1503
JF1/MsJ both 28.4168 0.7583 29.9064 26.9272
MOLF/EiJ both 13.4812 0.8233 15.0984 11.8641
MSM/MsJ both 15.5111 0.7801 17.0435 13.9788
NOD/ShiLtJ both 14.28 0.7762 15.8047 12.7553
NZB/BlNJ both 17.04 0.7762 18.5647 15.5153
NZW/LacJ both 23.33 0.7762 24.8547 21.8053
PERA/EiJ both 22.77 0.7762 24.2947 21.2453
PL/J both 19.6391 0.7583 21.1287 18.1495
PWK/PhJ both 16.5222 0.7526 18.0006 15.0439
SEA/GnJ both 25.5786 0.7186 26.9901 24.167
SJL/J both 16.89 0.7762 18.4147 15.3653
SM/J both 20.95 0.7762 22.4747 19.4253
SPRET/EiJ both 20.8389 0.7975 22.4053 19.2724
SWR/J both 13.625 0.7762 15.1497 12.1003
WSB/EiJ both 14.37 0.7762 15.8947 12.8453




  GWAS USING LINEAR MIXED MODELS